Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 1.1e-189 666.4 328 100.0
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 9.3e-91 337.8 196 80.1
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 1.0e-89 334.3 196 78.6
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 1.4e-78 297.4 214 66.8
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 2.4e-78 296.6 195 70.8
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 7.6e-77 291.6 209 67.9
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 1.3e-76 290.8 204 69.1
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 2.2e-76 290.0 204 68.6
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 2.9e-76 289.7 192 69.8
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 3.8e-76 289.3 204 68.1
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.2e-75 285.8 192 69.3
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.2e-74 284.3 201 66.7
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 2.1e-74 283.5 192 68.2
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 2.7e-74 283.1 196 65.8
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.7e-74 283.1 192 67.7
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.0e-73 281.2 196 65.3
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 2.3e-73 280.0 192 67.7
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 3.0e-73 279.6 187 69.0
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 1.5e-72 277.3 207 62.3
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 1.5e-72 277.3 204 65.7
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 1.9e-72 276.9 234 58.1
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.9e-72 276.9 192 66.1
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 4.3e-72 275.8 204 63.2
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 5.7e-72 275.4 192 68.2
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 1.3e-71 274.2 192 65.1
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 2.8e-71 273.1 215 62.8
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 3.7e-71 272.7 192 63.5
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.1e-70 271.2 193 65.3
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 1.4e-70 270.8 199 64.8
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 1.2e-69 267.7 192 63.5
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 1.2e-69 267.7 203 62.1
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 1.5e-69 267.3 198 63.1
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 1.3e-68 264.2 202 62.4
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 2.2e-68 263.5 203 60.1
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 5.0e-68 262.3 235 55.7
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 8.5e-68 261.5 204 58.3
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 2.5e-67 260.0 202 61.4
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 7.2e-67 258.5 199 61.8
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 1.6e-66 257.3 192 63.0
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 1.6e-66 257.3 225 56.0
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 2.1e-66 256.9 192 60.9
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 3.6e-66 256.1 208 57.2
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 3.6e-66 256.1 208 58.2
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 7.9e-66 255.0 192 62.0
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 1.3e-65 254.2 193 62.7
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 1.8e-65 253.8 196 63.3
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 1.8e-65 253.8 206 59.2
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 2.3e-65 253.4 202 55.9
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 3.0e-65 253.1 192 63.0
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 3.0e-65 253.1 214 56.5
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 3.0e-65 253.1 214 56.5
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 3.9e-65 252.7 192 58.3
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 5.1e-65 252.3 192 60.9
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 5.1e-65 252.3 203 57.1
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 8.7e-65 251.5 222 55.4
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 8.7e-65 251.5 214 57.0
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 1.1e-64 251.1 202 56.4
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 1.9e-64 250.4 201 56.7
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 1.9e-64 250.4 201 56.7
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 7.4e-64 248.4 194 58.8
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 7.4e-64 248.4 178 65.7
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 9.7e-64 248.1 226 54.0
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 9.7e-64 248.1 226 54.0
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.8e-63 246.5 192 59.9
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 2.8e-63 246.5 206 57.8
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 2.8e-63 246.5 196 60.7
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 4.8e-63 245.7 195 61.0
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 8.2e-63 245.0 192 59.9
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 8.2e-63 245.0 199 62.3
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.4e-62 244.2 192 59.9
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.8e-62 243.8 201 59.7
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 4.1e-62 242.7 177 63.3
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 1.2e-61 241.1 203 55.2
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 2.0e-61 240.4 196 60.2
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 3.4e-61 239.6 232 53.9
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 1.7e-60 237.3 238 52.5
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 2.2e-60 236.9 201 54.2
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 2.5e-59 233.4 207 52.7
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 3.2e-59 233.0 184 60.9
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 9.4e-59 231.5 202 53.0
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 2.7e-58 229.9 194 57.7
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 3.6e-58 229.6 182 58.2
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 3.6e-58 229.6 192 63.5
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 6.1e-58 228.8 221 52.0
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 1.0e-57 228.0 178 61.2
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 3.9e-57 226.1 178 61.8
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 1.1e-56 224.6 194 53.6
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 2.0e-56 223.8 193 56.5
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 5.7e-56 222.2 214 53.3
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 1.3e-55 221.1 192 56.2
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 1.7e-55 220.7 192 55.2
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 1.7e-55 220.7 202 54.5
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 2.2e-55 220.3 231 46.3
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 8.2e-55 218.4 168 60.1
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 3.1e-54 216.5 201 51.2
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.1e-54 216.1 177 61.6
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 2.6e-53 213.4 192 50.5
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 2.6e-53 213.4 192 54.2
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 1.0e-52 211.5 198 50.5
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 2.9e-52 209.9 194 51.0
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 1.1e-51 208.0 194 50.5
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 1.9e-51 207.2 194 52.1
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 6.1e-50 202.2 197 51.8
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 3.3e-48 196.4 259 40.2
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 2.2e-47 193.7 167 56.9
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 4.8e-47 192.6 170 54.7
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 1.8e-46 190.7 156 62.2
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 7.2e-43 178.7 135 65.9
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 4.7e-42 176.0 192 48.4
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 4.0e-41 172.9 120 61.7
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 6.7e-41 172.2 205 42.9
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 7.0e-38 162.2 194 44.8
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 9.1e-38 161.8 136 59.6
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 3.8e-36 156.4 124 58.9
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 1.5e-35 154.5 97 82.5
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 5.5e-35 152.5 206 37.4
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 4.0e-33 146.4 129 54.3
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.5e-32 144.4 103 65.0
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 5.7e-32 142.5 104 66.3
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 2.8e-31 140.2 199 40.7
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 3.7e-31 139.8 77 81.8
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 3.7e-31 139.8 140 54.3
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 4.8e-31 139.4 113 59.3
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 9.1e-30 135.2 132 50.0
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.0e-29 134.0 101 65.3
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 4.5e-29 132.9 96 66.7
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 2.9e-28 130.2 98 60.2
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 2.5e-27 127.1 98 55.1
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.0e-26 122.1 98 62.2
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 1.3e-20 104.8 102 48.0
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.7e-20 104.4 101 54.5
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.3e-20 104.0 95 58.9
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 3.8e-20 103.2 68 70.6
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 1.9e-19 100.9 78 52.6
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 8.0e-18 95.5 105 45.7
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 3.0e-17 93.6 102 51.0
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.2e-17 92.8 70 58.6
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 3.4e-16 90.1 63 65.1
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 9.2e-14 82.0 68 51.5
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 6.6e-12 75.9 68 51.5
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 1.9e-11 74.3 118 38.1
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 5.6e-11 72.8 48 62.5
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 9.5e-11 72.0 47 61.7
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 3.1e-09 67.0 108 43.5
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.5e-08 64.7 64 53.1
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 1.5e-08 64.7 43 65.1
MD02G1234500 Malus domestica HOM05D004774 ORTHO05D005514 5.8e-08 62.8 52 53.8
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 9.8e-08 62.0 41 63.4
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 1.3e-07 61.6 41 63.4
A03p16490 Brassica napus HOM05D037327 ORTHO05D005514 3.7e-07 60.1 34 64.7
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 3.7e-07 60.1 85 32.9
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 1.9e-06 57.8 81 39.5


User provided reference genes

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