Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 0.0e+00 2185.6 1124 100.0
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 0.0e+00 1482.2 1125 73.0
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 2.2e-293 1012.7 1102 54.5
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 1.9e-292 1009.6 1102 54.4
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 2.3e-290 1002.7 1134 52.7
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 2.3e-234 816.6 1118 44.5
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 9.8e-233 811.2 1130 44.0
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 4.3e-228 795.8 1117 44.5
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 8.0e-227 791.6 1058 46.1
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 1.8e-226 790.4 1117 43.3
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 4.0e-226 789.3 1137 44.2
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 6.4e-224 781.9 1110 43.6
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 8.3e-224 781.6 1137 43.2
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 1.1e-223 781.2 1095 45.0
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 1.6e-222 777.3 1117 43.6
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 2.1e-222 776.9 1135 43.7
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 1.3e-221 774.2 1078 44.8
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 3.3e-220 769.6 1113 42.6
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 9.5e-220 768.1 1095 43.8
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.5e-212 744.2 1122 42.8
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 2.1e-211 740.3 1100 42.0
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 4.7e-211 739.2 1006 44.7
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 1.8e-210 737.3 1121 42.6
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 2.4e-210 736.9 1077 43.0
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 4.4e-209 732.6 1080 43.7
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 3.2e-207 726.5 1121 42.2
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 9.2e-207 724.9 1046 42.8
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 1.6e-206 724.2 1071 41.3
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 4.6e-206 722.6 1116 41.8
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 8.7e-205 718.4 1121 41.7
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 1.2e-203 714.5 1005 43.9
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 1.6e-203 714.1 1079 40.9
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 5.3e-202 709.1 1125 40.4
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 6.9e-202 708.8 1133 40.3
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 7.6e-201 705.3 1022 42.9
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 2.9e-200 703.4 1031 42.9
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 6.4e-200 702.2 1097 39.6
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 6.4e-200 702.2 1126 40.2
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 7.1e-199 698.7 1055 41.8
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 7.8e-198 695.3 1022 42.5
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 3.0e-197 693.3 1109 40.8
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 1.1e-194 684.9 1130 39.7
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.8e-194 684.1 590 61.7
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 7.6e-193 678.7 1096 38.9
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 9.9e-193 678.3 1117 40.0
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 2.2e-192 677.2 1088 40.1
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 6.4e-192 675.6 1125 39.7
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 3.2e-191 673.3 1048 40.3
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 3.5e-190 669.8 1094 39.6
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 1.9e-188 664.1 1084 39.1
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 3.3e-188 663.3 1093 40.2
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 3.3e-188 663.3 1024 41.1
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 8.1e-187 658.7 1117 38.9
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 1.4e-186 657.9 1049 39.7
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 2.4e-186 657.1 1084 38.6
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 3.1e-186 656.8 1048 39.4
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 3.1e-186 656.8 1122 38.9
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 6.9e-186 655.6 1140 39.1
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 8.4e-184 648.7 1051 39.6
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 5.5e-183 646.0 1146 37.6
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 7.1e-183 645.6 1084 38.4
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 3.5e-182 643.3 1084 38.6
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 4.6e-182 642.9 1130 38.1
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 1.3e-181 641.3 1039 40.1
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 2.3e-181 640.6 1025 38.9
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 1.1e-180 638.3 1073 38.9
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 1.9e-180 637.5 1084 38.1
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 9.6e-180 635.2 1028 38.9
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 1.3e-179 634.8 1011 39.2
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 6.9e-178 629.0 1055 38.9
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 2.0e-177 627.5 1044 39.2
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 3.4e-177 626.7 1044 38.6
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 5.8e-177 625.9 1048 38.2
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 1.1e-175 621.7 1033 38.4
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 8.7e-173 612.1 1122 37.6
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 1.5e-172 611.3 1095 36.9
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 2.2e-171 607.4 1047 38.2
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 3.7e-171 606.7 1047 38.3
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 1.0e-168 598.6 1079 37.6
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 8.5e-168 595.5 1067 36.7
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 2.1e-166 590.9 1071 37.0
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 2.1e-166 590.9 1093 36.4
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 2.7e-166 590.5 1071 37.1
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 4.6e-166 589.7 1056 37.2
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 6.1e-166 589.3 1057 37.4
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 1.0e-165 588.6 1070 36.4
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 1.3e-163 581.6 1072 36.8
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 1.2e-161 575.1 622 51.9
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 1.7e-160 571.2 1026 36.5
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 9.4e-159 565.5 908 39.0
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 2.1e-158 564.3 1093 34.9
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 3.5e-153 547.0 1065 35.9
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 2.9e-144 517.3 591 50.1
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 3.8e-144 516.9 1136 33.0
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 3.8e-144 516.9 524 54.4
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 5.9e-137 493.0 1044 35.2
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.7e-136 491.5 398 66.1
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.7e-131 474.9 440 57.3
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 3.8e-128 463.8 1098 31.6
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 5.0e-128 463.4 1023 32.8
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 2.0e-124 451.4 399 59.6
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 2.6e-108 397.9 300 67.3
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 3.9e-88 330.9 1101 28.0
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 5.6e-87 327.0 248 66.9
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.1e-85 322.8 366 49.7
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 3.5e-81 307.8 525 38.5
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 5.1e-80 303.9 493 36.3
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 7.6e-76 290.0 591 34.0
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 6.4e-75 287.0 607 32.6
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 4.3e-63 247.7 502 31.9
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 2.6e-52 211.8 297 43.4
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 3.3e-47 194.9 219 53.4
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 3.4e-44 184.9 329 39.5
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 5.9e-44 184.1 412 30.3
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 2.9e-35 155.2 208 45.2
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 4.2e-34 151.4 152 55.3
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 5.5e-34 151.0 164 49.4
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 5.2e-32 144.4 405 26.7
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 2.2e-30 139.0 82 86.6
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 2.8e-30 138.7 162 48.1
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 3.1e-29 135.2 665 24.2
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 8.0e-25 120.6 168 45.8
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 8.0e-25 120.6 145 46.9
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 8.0e-17 94.0 92 54.3
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 1.8e-16 92.8 74 63.5
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 2.6e-15 89.0 169 37.9
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 1.4e-13 83.2 221 29.0
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 1.5e-10 73.2 274 27.4
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 2.1e-09 69.3 49 57.1
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.0e-08 67.0 72 43.1


User provided reference genes

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