Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 0.0e+00 1124.8 570 100.0
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 1.4e-280 969.1 575 86.8
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 1.4e-275 952.6 554 88.3
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 2.2e-273 945.3 573 83.8
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 5.1e-270 934.1 573 83.1
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 5.6e-269 930.6 574 83.6
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 2.8e-268 928.3 573 83.4
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 1.4e-267 926.0 575 83.5
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 5.3e-267 924.1 573 82.7
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 2.6e-266 921.8 575 82.4
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 4.5e-266 921.0 573 82.5
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 1.3e-265 919.5 573 82.0
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 4.9e-265 917.5 573 83.2
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 3.5e-263 911.4 576 81.6
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 6.7e-262 907.1 587 80.7
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 1.9e-261 905.6 575 81.6
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 5.6e-261 904.0 587 80.6
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 4.8e-260 901.0 577 81.1
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 1.1e-259 899.8 578 79.1
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 6.9e-259 897.1 594 79.5
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 9.0e-259 896.7 575 81.2
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 3.4e-258 894.8 577 80.8
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 1.3e-257 892.9 574 79.3
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.3e-257 892.9 576 80.4
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 1.4e-256 889.4 578 79.1
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 3.2e-256 888.3 581 78.5
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 1.2e-255 886.3 574 78.4
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 2.1e-255 885.6 574 80.5
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 6.0e-255 884.0 576 81.2
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 6.0e-255 884.0 573 79.9
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 2.5e-253 878.6 577 79.0
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 3.7e-252 874.8 573 79.2
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 4.8e-252 874.4 573 78.7
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 2.4e-251 872.1 573 79.1
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 5.8e-250 867.5 577 77.6
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 5.8e-250 867.5 575 78.6
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 1.7e-249 865.9 575 77.6
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 2.2e-249 865.5 578 77.5
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 5.0e-249 864.4 581 77.3
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 4.2e-248 861.3 577 77.3
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 5.5e-248 860.9 577 77.3
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 7.2e-248 860.5 578 78.0
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 7.2e-248 860.5 577 76.9
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 7.2e-248 860.5 573 78.0
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 9.3e-248 860.1 576 76.4
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 2.7e-247 858.6 570 76.5
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 3.5e-247 858.2 574 78.4
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 8.7e-246 853.6 578 77.9
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 1.1e-245 853.2 584 77.1
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 4.3e-245 851.3 576 78.1
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 4.3e-245 851.3 588 76.2
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 8.2e-244 847.0 577 76.3
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.4e-243 846.3 604 73.8
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 9.0e-243 843.6 573 75.9
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 1.3e-241 839.7 579 77.5
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.8e-238 829.3 573 76.1
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 8.8e-238 827.0 571 75.8
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 2.0e-237 825.9 587 76.0
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 8.2e-236 820.5 577 74.5
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 9.1e-235 817.0 677 66.8
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 3.4e-234 815.1 573 73.6
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 1.0e-233 813.5 576 75.0
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 3.8e-233 811.6 522 80.8
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 1.9e-232 809.3 574 73.2
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 4.2e-232 808.1 533 78.6
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 5.5e-232 807.7 575 74.8
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 7.2e-232 807.4 576 74.7
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 1.2e-231 806.6 576 74.8
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 2.1e-231 805.8 576 74.5
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 6.1e-231 804.3 419 96.4
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 2.3e-230 802.4 580 73.6
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 2.3e-230 802.4 576 73.3
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 1.1e-229 800.0 574 74.0
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 1.8e-227 792.7 636 67.6
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 5.3e-227 791.2 564 75.0
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 5.9e-226 787.7 583 72.0
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 2.5e-224 782.3 593 70.8
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 1.2e-223 780.0 558 73.7
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 8.0e-223 777.3 573 72.4
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 8.8e-222 773.9 574 72.1
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 5.7e-221 771.2 570 71.9
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 3.7e-220 768.5 566 72.3
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 1.8e-219 766.1 585 69.7
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 7.0e-219 764.2 571 71.5
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 3.5e-218 761.9 574 70.9
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 5.9e-218 761.1 593 70.5
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 1.3e-217 760.0 552 73.2
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 1.1e-216 756.9 556 72.7
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 1.8e-214 749.6 573 69.6
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 1.5e-213 746.5 572 69.6
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 2.2e-212 742.7 741 57.2
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 2.4e-211 739.2 578 69.6
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 2.4e-211 739.2 578 69.6
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 2.4e-211 739.2 578 69.6
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 2.4e-211 739.2 588 69.0
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 2.4e-211 739.2 505 76.8
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 7.0e-211 737.6 571 69.2
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 1.6e-210 736.5 585 67.4
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 2.9e-209 732.3 578 68.9
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 6.5e-209 731.1 578 68.7
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 1.5e-208 729.9 554 69.3
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 4.2e-208 728.4 574 71.4
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 1.7e-204 716.5 509 72.5
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 1.1e-200 703.7 563 67.3
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 7.8e-194 681.0 573 65.3
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 2.3e-193 679.5 578 66.6
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 8.0e-191 671.0 573 64.4
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 1.2e-183 647.1 492 69.3
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 4.1e-171 605.5 593 59.2
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 4.5e-157 558.9 389 75.8
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 1.0e-140 504.6 499 58.3
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 1.0e-140 504.6 499 58.3
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 1.0e-140 504.6 499 58.3
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 5.5e-139 498.8 616 50.2
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 3.3e-136 489.6 602 51.3
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 9.7e-128 461.5 477 56.6
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 8.5e-124 448.4 262 84.7
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 3.6e-122 443.0 355 67.3
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 7.5e-88 328.9 260 68.5
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 1.0e-84 318.5 243 71.6
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 3.8e-84 316.6 559 41.9
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 2.2e-79 300.8 200 77.5
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 3.7e-79 300.1 351 51.9
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 1.1e-78 298.5 161 91.9
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 8.6e-76 288.9 339 54.0
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 1.2e-72 278.5 160 85.6
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 3.4e-72 276.9 164 85.4
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 6.6e-68 262.7 275 54.9
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 9.5e-67 258.8 194 71.1
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 4.7e-66 256.5 173 77.5
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 6.8e-65 252.7 417 41.2
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.4e-54 218.4 424 39.4
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 1.9e-51 208.0 127 80.3
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.2e-48 198.7 134 72.4
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 9.3e-46 189.1 182 61.0
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 6.6e-44 183.0 127 77.2
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 4.3e-43 180.3 206 54.4
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 4.0e-41 173.7 600 30.5
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 5.3e-41 173.3 119 76.5
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 7.4e-35 152.9 163 55.8
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 3.0e-28 131.0 77 84.4
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 1.1e-25 122.5 157 46.5
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 4.0e-25 120.6 78 76.9
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 1.4e-22 112.1 58 94.8
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 5.1e-20 103.6 83 62.7
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 1.1e-19 102.4 182 36.8
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 5.7e-19 100.1 69 75.4
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 1.6e-18 98.6 118 48.3
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 3.7e-18 97.4 66 78.8
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 8.2e-18 96.3 69 78.3
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 7.6e-16 89.7 86 52.3
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 1.0e-15 89.4 146 38.4
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.2e-13 82.4 54 79.6
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 1.0e-12 79.3 87 44.8
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 1.5e-11 75.5 49 83.7
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 6.3e-10 70.1 64 64.1
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 1.5e-08 65.5 63 50.8
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 5.9e-08 63.5 63 49.2
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 2.2e-07 61.6 35 82.9


User provided reference genes

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