Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 1.4e-304 1048.9 566 100.0
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 1.1e-256 889.8 649 79.5
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 5.1e-230 801.2 577 78.3
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 5.1e-206 721.5 676 65.2
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 1.1e-200 703.7 572 66.6
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 9.7e-197 690.6 567 66.8
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 1.0e-185 654.1 556 67.8
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 3.8e-185 652.1 570 66.0
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 1.4e-182 643.7 597 60.0
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 3.4e-181 639.0 574 62.5
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 1.7e-180 636.7 644 59.2
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 4.9e-180 635.2 575 65.2
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 1.1e-179 634.0 606 59.6
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 9.2e-179 630.9 576 64.9
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 3.5e-178 629.0 576 61.5
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 1.5e-176 623.6 572 65.2
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 3.0e-174 615.9 597 60.8
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 4.0e-174 615.5 588 61.4
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 6.8e-174 614.8 576 60.4
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 2.2e-172 609.8 580 63.3
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 8.3e-172 607.8 597 60.5
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 7.0e-171 604.7 637 58.6
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 5.9e-170 601.7 576 63.4
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 4.3e-168 595.5 572 63.1
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 1.4e-166 590.5 577 58.9
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 2.0e-165 586.6 425 73.2
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 6.4e-164 581.6 568 59.0
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 3.5e-162 575.9 499 62.3
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 4.6e-162 575.5 581 61.6
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 1.9e-160 570.1 575 61.0
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 2.5e-160 569.7 571 60.2
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 2.3e-158 563.1 539 63.5
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 6.8e-158 561.6 583 57.8
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 9.8e-157 557.8 596 58.6
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 4.9e-156 555.4 619 57.5
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 2.4e-155 553.1 627 55.7
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 7.1e-155 551.6 498 64.9
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 7.1e-155 551.6 686 53.5
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 3.5e-154 549.3 627 55.5
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 1.5e-152 543.9 594 57.7
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 2.1e-151 540.0 411 74.0
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 2.8e-151 539.7 588 54.8
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 4.7e-151 538.9 570 59.6
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 8.1e-151 538.1 675 54.1
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.4e-150 537.3 544 58.1
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 6.8e-150 535.0 634 55.8
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 1.5e-149 533.9 620 54.7
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 9.9e-149 531.2 596 56.5
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 1.1e-147 527.7 545 60.2
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 1.9e-147 526.9 593 57.2
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 7.8e-146 521.5 615 53.8
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 1.2e-143 514.2 538 58.2
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 1.6e-143 513.8 623 47.7
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 1.8e-142 510.4 585 52.8
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 2.4e-142 510.0 628 52.4
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 5.2e-142 508.8 622 50.5
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 5.2e-142 508.8 578 54.8
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 1.3e-140 504.2 438 64.8
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 2.2e-140 503.4 653 50.4
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 7.1e-139 498.4 340 70.6
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 2.7e-138 496.5 356 75.3
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 1.3e-137 494.2 612 52.9
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 3.9e-137 492.7 571 52.5
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 5.1e-137 492.3 588 53.9
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 3.6e-135 486.1 431 65.2
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 1.1e-134 484.6 703 44.5
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 1.2e-133 481.1 572 53.1
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 1.2e-133 481.1 572 53.1
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 4.4e-133 479.2 599 51.4
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 5.8e-133 478.8 572 53.0
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 7.6e-133 478.4 569 53.4
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 2.9e-132 476.5 574 53.5
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 4.2e-131 472.6 478 60.7
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 3.5e-130 469.5 601 50.2
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 1.0e-129 468.0 571 51.8
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.9e-128 463.8 569 52.2
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.3e-127 461.1 568 52.5
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 2.8e-127 459.9 626 49.5
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 1.4e-126 457.6 569 52.5
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 6.9e-126 455.3 569 52.0
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 7.6e-125 451.8 523 52.6
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 2.2e-124 450.3 650 45.1
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 1.1e-123 448.0 564 49.3
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 1.9e-123 447.2 576 52.4
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 6.0e-122 442.2 275 76.4
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 2.3e-121 440.3 555 51.9
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 7.4e-120 435.3 575 48.5
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 2.1e-119 433.7 399 59.9
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 3.1e-118 429.9 682 40.3
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 3.2e-115 419.9 681 41.1
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.2e-114 417.9 481 53.4
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 3.0e-113 413.3 555 51.0
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 4.8e-111 406.0 562 48.9
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 6.9e-110 402.1 459 49.2
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 3.8e-108 396.4 392 57.9
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 7.2e-107 392.1 459 50.1
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 9.3e-107 391.7 459 48.8
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 9.3e-107 391.7 459 48.8
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 1.6e-106 391.0 349 55.3
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 7.9e-106 388.7 460 51.3
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.8e-105 387.5 559 47.8
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 8.7e-105 385.2 460 50.9
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 7.4e-104 382.1 653 44.7
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.5e-101 374.4 548 46.9
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 2.1e-98 364.0 637 40.8
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 1.5e-96 357.8 441 55.8
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 3.4e-93 346.7 401 49.4
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 3.2e-91 340.1 535 43.2
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 4.2e-91 339.7 299 61.9
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 4.8e-87 326.2 570 45.1
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 9.4e-83 312.0 582 39.3
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 2.7e-77 293.9 331 45.0
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 3.5e-77 293.5 330 44.8
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 7.7e-77 292.4 441 44.7
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 7.5e-72 275.8 329 41.9
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 3.5e-69 266.9 289 55.4
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 1.3e-68 265.0 280 59.6
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.0e-52 212.2 266 42.1
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 2.5e-51 207.6 125 79.2
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 9.8e-48 195.7 382 34.0
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 4.4e-40 170.2 326 41.4
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 7.8e-37 159.5 287 35.9
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 3.4e-32 144.1 184 44.0
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 8.4e-31 139.4 100 68.0
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 6.6e-28 129.8 116 62.1
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 4.0e-25 120.6 73 78.1
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 2.0e-16 91.7 69 60.9
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 3.4e-16 90.9 62 61.3
MSTRG.15763 Avicennia marina HOM05D005778 ORTHO05D038954 1.2e-13 82.4 364 35.4
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 4.6e-13 80.5 61 52.5
Psat7g050000 Pisum sativum HOM05D005778 ORTHO05D007245 5.1e-12 77.0 191 37.7
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 4.8e-10 70.5 45 77.8
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 4.0e-09 67.4 53 60.4
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 1.7e-07 62.0 37 70.3


User provided reference genes

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