Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 1.8e-271 938.7 484 100.0
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 1.5e-259 899.0 484 96.1
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 2.2e-226 788.9 486 85.0
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 1.4e-204 716.5 499 74.9
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 6.2e-200 701.0 458 76.6
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 7.5e-198 694.1 486 74.5
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 9.8e-198 693.7 442 78.5
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 1.3e-197 693.3 491 73.3
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 4.9e-197 691.4 490 73.5
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 3.2e-196 688.7 472 73.9
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 7.0e-196 687.6 502 72.3
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 2.7e-195 685.6 490 73.3
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 4.6e-195 684.9 435 79.5
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 7.8e-195 684.1 455 76.7
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 1.7e-194 682.9 506 70.2
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 2.3e-194 682.6 498 72.5
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 2.3e-194 682.6 433 78.1
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 3.9e-194 681.8 507 69.8
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 2.5e-193 679.1 488 71.9
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 4.3e-193 678.3 456 75.9
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 5.6e-193 677.9 487 71.3
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 1.2e-192 676.8 480 73.3
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 2.1e-192 676.0 430 77.0
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 2.8e-192 675.6 489 72.0
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 3.6e-192 675.2 482 72.2
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 3.6e-192 675.2 511 70.8
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 6.2e-192 674.5 496 71.2
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 1.1e-191 673.7 463 72.6
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 2.3e-191 672.5 461 75.1
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 1.2e-190 670.2 452 74.8
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 1.2e-190 670.2 499 70.5
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 1.2e-190 670.2 481 71.1
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 2.0e-190 669.5 486 71.8
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 2.6e-190 669.1 483 71.8
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 3.4e-190 668.7 491 70.7
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 5.8e-190 667.9 492 70.9
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 5.8e-190 667.9 450 74.0
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 7.5e-190 667.5 472 72.7
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 1.7e-189 666.4 481 72.6
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 2.9e-189 665.6 436 76.1
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 3.7e-189 665.2 470 72.3
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 8.3e-189 664.1 501 69.9
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 1.1e-188 663.7 501 69.7
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 1.4e-188 663.3 449 73.7
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 2.4e-188 662.5 466 70.6
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 2.4e-188 662.5 467 71.9
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 2.4e-188 662.5 492 69.5
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 4.1e-188 661.8 446 73.8
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 5.4e-188 661.4 502 69.5
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 7.1e-188 661.0 497 70.8
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 1.2e-187 660.2 503 68.8
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 1.2e-187 660.2 484 69.2
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 1.6e-187 659.8 436 75.0
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 2.7e-187 659.1 446 73.1
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 2.7e-187 659.1 493 71.2
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 6.0e-187 657.9 442 72.4
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 1.0e-186 657.1 429 77.9
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 1.0e-186 657.1 482 70.5
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 1.3e-186 656.8 505 68.7
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.7e-186 656.4 475 70.3
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 8.6e-186 654.1 466 71.5
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 1.9e-185 652.9 453 72.8
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 2.5e-185 652.5 446 73.1
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 4.3e-185 651.7 473 70.4
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 5.6e-185 651.4 429 76.0
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 1.2e-184 650.2 453 72.6
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 1.2e-184 650.2 453 72.8
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 1.2e-184 650.2 480 69.4
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 2.1e-184 649.4 481 68.4
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 3.6e-184 648.7 477 69.4
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 8.1e-184 647.5 453 72.6
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 1.8e-183 646.4 440 71.6
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 2.4e-183 646.0 453 72.6
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 5.2e-183 644.8 440 72.0
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 5.2e-183 644.8 472 70.1
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 6.8e-183 644.4 481 69.2
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 8.9e-183 644.0 474 69.6
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 4.4e-182 641.7 448 70.5
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 4.4e-182 641.7 477 69.2
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 7.6e-182 641.0 453 72.0
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 7.6e-182 641.0 453 72.0
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 1.3e-181 640.2 477 69.0
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 3.8e-181 638.6 441 73.9
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 3.8e-181 638.6 441 73.9
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 3.8e-181 638.6 436 73.6
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 3.8e-181 638.6 482 68.9
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.1e-180 637.1 484 67.6
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 7.1e-180 634.4 479 68.7
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 9.2e-180 634.0 452 70.1
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 1.6e-179 633.3 428 75.0
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 2.1e-179 632.9 478 68.8
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 6.0e-179 631.3 449 69.9
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 1.0e-178 630.6 478 68.6
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 1.0e-178 630.6 522 65.3
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 1.3e-178 630.2 474 67.5
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 1.7e-178 629.8 574 60.5
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 1.1e-175 620.5 438 70.5
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 1.4e-175 620.2 437 70.5
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 6.9e-175 617.8 444 70.5
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 2.0e-174 616.3 423 74.0
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 4.9e-173 611.7 508 62.8
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 2.3e-170 602.8 502 62.5
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 1.4e-167 593.6 445 65.6
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 1.3e-165 587.0 449 66.6
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 6.4e-165 584.7 433 66.5
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 2.1e-163 579.7 447 67.3
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 7.9e-163 577.8 434 65.4
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 6.7e-162 574.7 454 63.0
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 1.4e-156 557.0 483 62.1
TAR633G2758 Trochodendron aralioides HOM05D005235 ORTHO05D006938 5.3e-151 538.5 317 83.9
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 3.8e-149 532.3 443 58.5
SEGI_38902 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 4.6e-147 525.4 372 69.1
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 1.1e-145 520.8 481 61.3
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 1.1e-140 504.2 461 55.7
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.1e-135 487.6 425 60.2
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 3.1e-135 486.1 447 59.5
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 4.2e-132 475.7 498 49.4
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 5.1e-130 468.8 477 51.6
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 6.5e-125 451.8 425 57.9
Actinidia19541 Actinidia chinensis HOM05D005235 ORTHO05D006938 1.2e-115 421.0 443 55.1
FAN04G0607 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.5e-100 370.2 255 72.2
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 3.0e-85 320.1 395 47.8
Pp3s58_130 Physcomitrium patens HOM05D005235 ORTHO05D006938 2.3e-82 310.5 425 39.1
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 4.4e-73 279.6 437 43.5
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 1.7e-72 277.7 266 59.0
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 4.1e-71 273.1 210 68.6
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 6.0e-70 269.2 282 55.0
BcaC09g47648 Brassica carinata HOM05D005235 ORTHO05D032674 5.6e-68 262.7 333 49.2
HPP92_015557 Vanilla planifolia HOM05D005235 ORTHO05D006938 3.8e-64 250.0 174 71.8
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 2.1e-62 244.2 486 30.7
Haze_27256 Corylus avellana HOM05D005235 ORTHO05D006938 1.4e-58 231.5 281 41.6
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.3e-48 198.4 158 65.2
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 6.0e-46 189.5 389 36.0
BraA01t04657Z Brassica rapa HOM05D005235 ORTHO05D032674 2.2e-40 171.0 131 69.5
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 1.4e-34 151.8 113 67.3
FAN09G2876 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.2e-33 148.7 96 71.9
SEGI_05348 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 1.3e-24 118.6 67 83.6
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 5.1e-21 106.7 78 64.1
arahy.Tifrunner.gnm1.ann1.J19R9Y Arachis hypogaea HOM05D005235 ORTHO05D038945 1.3e-19 102.1 57 82.5
SEGI_33043 Sequoiadendron giganteum HOM05D005235 ORTHO05D008256 2.8e-19 100.9 70 67.1
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 1.0e-16 92.4 98 56.1
Nn1g04561 Nelumbo nucifera HOM05D005235 ORTHO05D038945 1.4e-15 88.6 85 57.6
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 7.2e-15 86.3 61 70.5
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 6.7e-13 79.7 49 77.6
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 6.7e-13 79.7 49 77.6
Oeu038380.1 Olea europaea HOM05D007843 ORTHO05D003639 1.3e-11 75.5 62 62.9
BolC1t05887H Brassica oleracea HOM05D005235 ORTHO05D014124 2.2e-11 74.7 68 63.2
SEGI_20498 Sequoiadendron giganteum HOM05D037692 ORTHO05D385547 6.1e-06 56.6 47 59.6


User provided reference genes

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