Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 4.9e-145 517.7 246 100.0
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 4.5e-114 414.8 245 80.0
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 1.5e-109 399.8 250 75.6
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 9.0e-107 390.6 250 76.0
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 1.2e-106 390.2 243 81.9
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 1.1e-104 383.6 245 73.9
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 9.4e-104 380.6 246 73.6
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 6.1e-103 377.9 249 73.9
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 1.4e-102 376.7 246 72.8
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 3.0e-102 375.6 249 73.5
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 3.0e-102 375.6 250 70.8
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 3.0e-102 375.6 228 77.2
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 1.1e-101 373.6 244 71.7
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 1.7e-100 369.8 245 69.8
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 1.1e-99 367.1 249 71.5
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 1.1e-99 367.1 246 72.8
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 6.9e-99 364.4 244 70.9
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 9.1e-99 364.0 245 71.0
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 3.4e-98 362.1 232 74.1
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 3.4e-98 362.1 222 75.2
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 1.7e-97 359.8 222 74.8
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 2.2e-97 359.4 244 70.1
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 3.8e-97 358.6 226 71.2
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 1.1e-96 357.1 226 71.7
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 1.4e-96 356.7 244 70.5
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 2.5e-96 355.9 244 70.1
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 9.4e-96 354.0 244 69.7
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 1.0e-94 350.5 236 68.2
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 1.4e-94 350.1 237 67.5
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 1.4e-94 350.1 245 69.0
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 1.4e-94 350.1 245 69.0
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 3.0e-94 349.0 230 70.0
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 3.0e-94 349.0 245 66.9
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 3.9e-94 348.6 244 67.2
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 2.6e-93 345.9 246 67.5
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 4.4e-93 345.1 245 67.8
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 4.4e-93 345.1 245 68.2
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 5.7e-93 344.7 244 66.4
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 5.7e-93 344.7 222 71.2
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 7.4e-93 344.4 221 71.5
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 3.7e-92 342.0 246 66.7
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 4.8e-92 341.7 220 70.5
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 4.8e-92 341.7 238 65.5
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 8.2e-92 340.9 221 71.9
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 1.1e-91 340.5 220 70.5
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 1.8e-91 339.7 230 69.1
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 5.3e-91 338.2 231 68.4
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 9.1e-91 337.4 220 70.5
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 1.2e-90 337.0 214 71.5
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 1.2e-90 337.0 243 65.4
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 1.6e-90 336.7 261 62.5
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 1.6e-90 336.7 261 62.5
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 1.6e-90 336.7 245 66.1
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 2.6e-90 335.9 247 66.4
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 7.7e-90 334.3 231 69.7
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 1.3e-89 333.6 230 68.7
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 1.7e-89 333.2 222 70.3
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 1.7e-89 333.2 222 70.3
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 1.7e-89 333.2 222 70.3
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 1.7e-89 333.2 222 70.3
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 3.8e-89 332.0 241 63.1
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 6.5e-89 331.3 249 66.7
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 8.5e-89 330.9 225 70.7
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 1.1e-88 330.5 205 75.1
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 1.5e-88 330.1 247 66.4
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 3.2e-88 328.9 247 65.6
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 4.2e-88 328.6 237 65.4
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 5.5e-88 328.2 253 61.7
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 5.5e-88 328.2 234 64.5
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 7.2e-88 327.8 215 70.2
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 1.6e-87 326.6 206 73.3
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 1.6e-87 326.6 241 61.8
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 2.7e-87 325.9 228 64.0
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 6.1e-87 324.7 225 64.4
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 1.8e-86 323.2 242 65.7
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 2.6e-85 319.3 220 68.2
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 9.7e-85 317.4 246 61.4
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 1.7e-84 316.6 246 62.6
DCAR_002245 Daucus carota HOM05D006551 ORTHO05D008546 3.7e-84 315.5 227 63.9
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 4.1e-83 312.0 223 67.7
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 9.1e-83 310.8 216 66.7
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 1.6e-82 310.1 215 67.9
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 1.6e-82 310.1 246 58.9
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 2.0e-82 309.7 238 62.6
Oeu025969.1 Olea europaea HOM05D006551 ORTHO05D008546 3.8e-81 305.4 202 69.8
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 5.7e-77 291.6 192 69.8
PGR004G0828 Punica granatum HOM05D006551 ORTHO05D008546 1.4e-75 287.0 189 71.4
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 9.1e-75 284.3 180 72.8
Solyc04g015080.4 Solanum lycopersicum HOM05D006551 ORTHO05D008546 3.5e-74 282.3 156 77.6
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 5.9e-74 281.6 171 78.4
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 1.0e-73 280.8 171 78.4
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 2.7e-71 272.7 180 68.9
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 5.2e-70 268.5 169 75.7
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 5.6e-64 248.4 151 72.8
Eucgr.E03848 Eucalyptus grandis HOM05D006551 ORTHO05D008546 1.2e-63 247.3 186 59.7
AUR62012856 Chenopodium quinoa HOM05D006551 ORTHO05D008546 2.9e-60 236.1 172 69.8
ATR0751G145 Amborella trichopoda HOM05D006551 ORTHO05D008546 1.4e-59 233.8 167 67.7
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 1.8e-54 216.9 290 41.4
Peaxi162Scf00827g00057 Petunia axillaris HOM05D006551 ORTHO05D008546 3.3e-48 196.1 163 62.6
SEGI_23146 Sequoiadendron giganteum HOM05D006551 ORTHO05D008546 4.7e-47 192.2 225 47.6
AagrBONN_evm.TU.Sc2ySwM_369.541 Anthoceros agrestis HOM05D006551 ORTHO05D008546 2.3e-46 189.9 248 41.1
SHI31451 Sapria himalayana HOM05D006551 ORTHO05D008546 1.7e-41 173.7 117 72.6
SHI31456 Sapria himalayana HOM05D006551 ORTHO05D008546 9.9e-37 157.9 115 60.9
CBR_g3891 Chara braunii HOM05D006551 ORTHO05D008546 6.4e-36 155.2 154 49.4
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 7.1e-35 151.8 115 56.5
Sed0010073 Sechium edule HOM05D006551 ORTHO05D008546 1.1e-32 144.4 189 41.8
Glyma.15G120500 Glycine max HOM05D006551 ORTHO05D008546 2.5e-32 143.3 114 67.5
Hma1.2p1_1322F.1_g275500 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 3.0e-17 93.2 60 78.3
VMungo0540G1474 Vigna mungo HOM05D006551 ORTHO05D008546 1.5e-16 90.9 62 74.2
Os06g0286310 Oryza sativa ssp. japonica HOM05D006551 ORTHO05D008546 4.3e-16 89.4 82 52.4
Sp4g01310 Schrenkiella parvula HOM05D006551 ORTHO05D008546 3.6e-15 86.3 51 60.8
Solyc12g056880.2 Solanum lycopersicum HOM05D006551 ORTHO05D008546 3.1e-14 83.2 96 49.0
Cfa024106 Carpinus fangiana HOM05D006551 ORTHO05D008546 4.0e-14 82.8 123 36.6
Pp3c2_11520 Physcomitrium patens HOM05D006551 ORTHO05D008546 5.3e-14 82.4 136 36.8
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 8.4e-12 75.1 75 48.0
PRCOL_00002494 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 1.9e-11 73.9 166 33.7
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 1.0e-09 68.2 52 53.8
PRCOL_00003886 Prasinoderma coloniale HOM05D006551 ORTHO05D044110 7.4e-08 62.0 180 26.7
Cfa024972 Carpinus fangiana HOM05D006551 ORTHO05D043702 4.8e-07 59.3 126 33.3


User provided reference genes

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