Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 9.1e-162 573.5 296 100.0
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 5.4e-82 308.5 314 57.0
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 3.1e-69 266.2 313 50.2
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 3.4e-68 262.7 308 50.0
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 2.5e-66 256.5 317 47.6
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 2.5e-66 256.5 319 47.3
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 5.5e-66 255.4 298 50.0
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 7.1e-66 255.0 298 50.0
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 6.0e-65 251.9 310 47.7
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 7.9e-65 251.5 303 51.2
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 1.8e-64 250.4 309 50.2
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 2.3e-64 250.0 309 50.2
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 6.7e-64 248.4 316 47.2
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 6.7e-64 248.4 297 50.8
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 2.5e-63 246.5 322 46.6
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 4.3e-63 245.7 295 49.8
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 1.3e-62 244.2 310 50.0
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 1.6e-62 243.8 327 46.2
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 4.8e-62 242.3 339 44.5
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 1.4e-61 240.7 310 48.7
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 3.1e-61 239.6 351 43.0
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 1.2e-60 237.7 332 43.7
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 4.5e-60 235.7 304 47.0
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 1.0e-59 234.6 309 46.0
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 1.7e-59 233.8 312 46.5
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 3.8e-59 232.6 299 47.5
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 8.5e-59 231.5 307 45.3
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 8.5e-59 231.5 365 41.4
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 2.5e-58 229.9 377 40.6
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 1.6e-57 227.3 345 42.3
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 1.0e-56 224.6 317 46.7
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 1.3e-56 224.2 384 38.0
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 1.8e-56 223.8 318 46.2
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 2.3e-56 223.4 312 45.2
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 5.1e-56 222.2 205 57.1
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 6.7e-56 221.9 378 39.7
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 1.1e-55 221.1 344 42.2
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 3.3e-55 219.5 395 39.7
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 5.7e-55 218.8 346 40.8
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 5.7e-55 218.8 329 41.3
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 9.7e-55 218.0 324 41.4
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 3.7e-54 216.1 327 41.9
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 8.2e-54 214.9 320 41.6
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 1.8e-53 213.8 385 36.1
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 2.4e-53 213.4 377 39.3
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 3.1e-53 213.0 327 41.6
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 4.1e-53 212.6 302 43.7
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 5.3e-53 212.2 377 39.0
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 9.1e-53 211.5 382 38.2
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 9.1e-53 211.5 301 44.2
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 9.1e-53 211.5 304 42.4
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 1.2e-52 211.1 155 64.5
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 3.4e-52 209.5 339 38.9
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 1.3e-51 207.6 321 45.5
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 1.7e-51 207.2 398 37.9
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 2.9e-51 206.5 353 41.6
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 2.9e-51 206.5 330 42.4
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 2.9e-51 206.5 410 36.3
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 2.9e-51 206.5 326 39.6
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 5.0e-51 205.7 277 45.8
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 6.5e-51 205.3 323 41.5
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 1.1e-50 204.5 324 41.4
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 1.4e-50 204.1 329 43.8
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 1.9e-50 203.8 325 41.8
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 1.9e-50 203.8 317 44.2
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 1.9e-50 203.8 317 44.2
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 1.9e-50 203.8 322 41.3
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 3.2e-50 203.0 314 41.1
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 9.4e-50 201.4 247 49.0
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 7.9e-49 198.4 421 35.9
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 7.9e-49 198.4 418 33.5
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 1.4e-48 197.6 312 42.3
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 3.0e-48 196.4 220 50.5
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 3.0e-48 196.4 413 34.9
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 3.9e-48 196.1 420 35.7
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 5.1e-48 195.7 206 54.4
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 6.7e-48 195.3 410 35.1
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 1.5e-47 194.1 398 35.2
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 2.0e-47 193.7 212 51.4
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 2.6e-47 193.4 211 51.2
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 2.6e-47 193.4 269 44.6
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 2.2e-46 190.3 392 35.7
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 2.8e-46 189.9 398 37.2
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 3.7e-46 189.5 268 42.9
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 4.1e-45 186.0 155 60.6
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 5.3e-45 185.7 439 34.2
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 6.9e-45 185.3 158 60.8
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 1.2e-44 184.5 155 60.6
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 2.6e-44 183.3 209 46.9
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 2.6e-44 183.3 209 46.9
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 3.4e-44 183.0 442 33.5
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 7.7e-44 181.8 209 46.4
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 1.0e-43 181.4 292 40.1
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 1.0e-43 181.4 292 40.1
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 8.8e-40 168.3 291 38.1
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 1.5e-39 167.5 322 37.6
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 4.4e-39 166.0 153 52.3
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 1.4e-37 161.0 155 51.0
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 7.0e-37 158.7 287 40.4
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 6.1e-33 145.6 251 38.6
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 1.8e-32 144.1 158 43.7
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 3.3e-31 139.8 257 37.4
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 9.1e-29 131.7 325 29.8
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 5.9e-28 129.0 150 44.0
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 1.3e-27 127.9 156 41.0
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 5.0e-27 125.9 165 41.2
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 3.2e-26 123.2 154 42.9
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 5.7e-23 112.5 167 35.9
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 1.1e-21 108.2 68 80.9
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 1.4e-21 107.8 129 44.2
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 1.9e-18 97.4 63 66.7
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 1.6e-12 77.8 56 64.3
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 2.1e-09 67.4 46 67.4
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 2.1e-09 67.4 46 67.4
vmacro16295 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 1.3e-06 58.2 42 64.3


User provided reference genes

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