Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 0.0e+00 1723.8 956 100.0
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 7.9e-308 1060.4 928 65.4
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 1.4e-299 1033.1 915 65.9
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 5.9e-295 1017.7 898 64.5
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 3.7e-289 998.4 888 64.9
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 1.2e-287 993.4 888 64.5
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 7.2e-285 984.2 876 64.5
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 3.3e-282 975.3 890 64.4
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 1.3e-281 973.4 964 60.4
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 6.3e-281 971.1 878 62.6
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 9.1e-280 967.2 972 59.7
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 3.5e-279 965.3 985 57.3
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 3.8e-278 961.8 875 62.7
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 1.1e-277 960.3 930 60.8
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 1.1e-277 960.3 912 60.6
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 5.2e-275 951.4 916 60.3
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 5.7e-274 948.0 871 61.9
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 5.7e-274 948.0 930 61.0
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 1.8e-272 943.0 981 60.0
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 7.0e-272 941.0 974 58.8
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 2.0e-271 939.5 884 62.4
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 5.9e-271 937.9 975 57.6
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 1.7e-270 936.4 917 60.5
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 2.2e-270 936.0 980 58.1
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 8.5e-270 934.1 929 59.5
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 8.0e-268 927.5 906 59.6
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 5.2e-267 924.9 894 60.7
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 3.4e-266 922.2 909 59.5
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 1.7e-265 919.8 922 59.0
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.7e-263 912.5 1018 56.0
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 1.3e-262 910.2 894 59.6
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 2.5e-261 906.0 960 56.2
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.6e-260 903.3 876 59.9
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 4.7e-260 901.7 934 57.6
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 5.7e-258 894.8 910 58.5
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.8e-257 892.5 910 58.4
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 4.9e-257 891.7 930 57.6
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 8.3e-257 891.0 930 57.6
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 8.3e-257 891.0 874 59.6
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 1.4e-256 890.2 965 56.3
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 1.4e-256 890.2 929 57.6
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 1.4e-256 890.2 937 59.2
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 4.1e-256 888.6 929 56.4
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.6e-255 886.7 875 59.0
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 4.5e-255 885.2 867 59.5
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 1.0e-254 884.0 856 59.7
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 1.5e-250 870.2 920 56.8
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 7.5e-250 867.8 940 56.1
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 1.7e-249 866.7 928 55.5
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 1.4e-248 863.6 908 56.2
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 4.1e-248 862.1 906 56.0
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 5.4e-248 861.7 809 60.8
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 9.2e-248 860.9 911 56.8
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 2.0e-247 859.8 872 56.9
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 7.8e-247 857.8 924 57.8
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 7.8e-247 857.8 982 55.4
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 1.7e-246 856.7 855 59.8
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 3.9e-246 855.5 921 55.3
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 6.6e-246 854.7 893 56.0
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 1.5e-245 853.6 977 54.7
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 4.3e-245 852.0 874 58.0
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 9.5e-245 850.9 818 60.6
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 2.8e-244 849.4 910 56.2
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 6.2e-244 848.2 875 56.8
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 5.8e-242 841.6 922 55.2
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 1.1e-240 837.4 898 54.8
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 3.2e-240 835.9 917 56.1
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 5.4e-240 835.1 967 53.4
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 2.1e-239 833.2 967 53.2
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 5.1e-238 828.6 878 55.9
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 4.3e-237 825.5 969 53.4
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 2.1e-236 823.2 930 53.9
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 2.3e-235 819.7 924 53.6
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 3.1e-235 819.3 941 53.3
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 9.9e-234 814.3 878 55.5
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 1.9e-232 810.1 971 54.0
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 2.5e-229 799.7 914 55.0
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 4.4e-226 788.9 880 55.5
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 1.3e-225 787.3 936 53.7
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 7.3e-221 771.5 800 56.8
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.2e-220 770.8 909 52.9
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.8e-219 766.9 931 51.6
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 2.2e-217 760.0 627 67.0
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 2.9e-217 759.6 971 49.9
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.1e-216 757.7 935 51.2
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 1.1e-211 741.1 876 52.1
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 1.3e-209 734.2 886 52.4
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 1.9e-208 730.3 930 50.1
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 4.2e-208 729.2 975 48.5
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 4.2e-208 729.2 975 48.5
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 2.1e-207 726.9 931 49.2
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 2.1e-207 726.9 931 50.5
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 2.1e-207 726.9 932 49.9
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 7.9e-207 724.9 975 48.0
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 3.0e-206 723.0 976 47.7
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 3.7e-204 716.1 869 52.2
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 2.4e-203 713.4 933 50.2
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 9.9e-202 708.0 929 49.7
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.4e-200 704.1 722 58.0
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 1.8e-195 687.2 929 48.2
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 5.8e-194 682.2 937 48.6
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 4.6e-191 672.5 937 48.1
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 1.9e-189 667.2 866 48.6
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 1.4e-187 661.0 895 47.7
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 2.6e-186 656.8 1021 42.1
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 1.1e-181 641.3 477 69.8
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 1.5e-181 641.0 946 43.7
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.8e-172 610.1 945 43.2
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 2.5e-168 597.0 892 44.5
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 2.5e-168 597.0 485 64.1
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 6.7e-166 589.0 945 42.6
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 3.7e-164 583.2 889 43.3
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 1.5e-152 544.7 482 59.8
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 1.6e-143 514.6 857 41.9
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 2.2e-132 477.6 565 52.2
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 1.4e-115 421.8 937 36.1
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.1e-107 395.6 482 50.4
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 9.0e-102 375.9 493 54.8
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 7.4e-88 329.7 387 57.4
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 8.1e-87 326.2 318 54.7
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 3.5e-82 310.8 393 55.2
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 3.3e-80 304.3 400 45.0
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 6.9e-78 296.6 396 44.9
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 6.5e-76 290.0 419 51.1
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 1.1e-75 289.3 435 49.4
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 1.1e-72 279.3 295 52.2
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 9.7e-72 276.2 256 59.0
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 1.5e-69 268.9 327 47.4
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.8e-62 245.4 170 72.4
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 3.6e-58 231.1 527 30.0
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 1.1e-56 226.1 360 47.2
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 1.1e-54 219.5 977 26.2
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 2.6e-48 198.4 156 61.5
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 3.6e-34 151.4 151 60.3
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.0e-33 149.8 151 60.3
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 8.6e-28 130.2 96 61.5
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 3.4e-24 118.2 190 44.7
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 3.5e-21 108.2 77 68.8
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.8e-18 98.6 77 62.3
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 7.5e-16 90.5 84 54.8
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 6.4e-15 87.4 90 60.0
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 8.3e-15 87.0 65 72.3
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 3.2e-14 85.1 90 55.6
Sabra10G0198200 Salix brachista HOM05D004199 ORTHO05D349944 7.0e-14 84.0 142 42.3
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 3.9e-12 78.2 85 49.4
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 1.2e-08 66.6 89 49.4
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.0e-08 65.9 121 34.7
AagrBONN_evm.TU.Sc2ySwM_368.453 Anthoceros agrestis HOM05D030179 ORTHO05D026588 3.2e-06 58.5 47 53.2
PGSC0003DMG402029949 Solanum tuberosum HOM05D004199 ORTHO05D005905 7.1e-06 57.4 46 71.7


User provided reference genes

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