Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 4.2e-195 684.5 338 100.0
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 1.3e-132 476.9 341 71.6
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 1.2e-130 470.3 341 70.4
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 4.7e-130 468.4 341 69.8
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 4.7e-130 468.4 341 69.8
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 1.0e-129 467.2 342 70.8
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 4.1e-126 455.3 347 69.5
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 4.5e-125 451.8 338 67.2
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 1.0e-124 450.7 298 74.2
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 1.9e-123 446.4 350 66.6
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 2.5e-123 446.0 331 69.5
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 7.3e-123 444.5 311 71.7
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 9.5e-123 444.1 354 64.7
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 2.1e-122 443.0 349 66.2
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 3.6e-122 442.2 330 68.8
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 3.6e-122 442.2 337 66.5
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 4.7e-122 441.8 344 66.6
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 1.8e-121 439.9 336 67.6
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 4.0e-121 438.7 339 67.3
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 4.0e-121 438.7 339 67.3
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 5.2e-121 438.3 275 77.8
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 6.8e-121 438.0 339 65.2
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 1.2e-120 437.2 352 64.2
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 4.4e-120 435.3 339 67.0
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 5.7e-120 434.9 339 65.2
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 1.7e-119 433.3 341 66.6
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 3.7e-119 432.2 340 64.7
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 4.9e-119 431.8 265 77.4
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 1.4e-118 430.3 291 73.5
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 2.4e-118 429.5 340 65.0
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 5.4e-118 428.3 296 71.6
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 5.4e-118 428.3 291 73.5
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 5.4e-118 428.3 284 73.9
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 1.6e-117 426.8 340 64.7
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 2.0e-117 426.4 342 65.2
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 2.0e-117 426.4 342 65.2
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 3.5e-117 425.6 265 76.2
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 3.5e-117 425.6 342 64.3
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 4.6e-117 425.2 300 71.0
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 1.0e-116 424.1 339 64.3
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 3.9e-116 422.2 347 60.8
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 3.9e-116 422.2 341 64.8
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 5.0e-116 421.8 339 64.0
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 8.6e-116 421.0 340 64.1
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 1.9e-115 419.9 346 64.7
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 3.3e-115 419.1 339 61.9
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 3.3e-115 419.1 343 65.9
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 5.6e-115 418.3 339 62.8
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 7.3e-115 417.9 344 64.0
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 1.2e-114 417.2 347 64.8
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 1.2e-114 417.2 381 58.3
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 2.1e-114 416.4 339 62.5
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 2.1e-114 416.4 342 63.2
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 2.1e-114 416.4 339 61.4
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 6.2e-114 414.8 269 73.2
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 8.0e-114 414.5 342 63.7
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 2.3e-113 412.9 283 70.7
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 3.1e-113 412.5 278 71.9
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 5.2e-113 411.8 342 63.2
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 6.8e-113 411.4 342 62.6
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 6.8e-113 411.4 341 61.6
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 8.9e-113 411.0 324 65.1
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 2.0e-112 409.8 364 59.6
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 9.8e-112 407.5 318 67.6
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 9.8e-112 407.5 341 62.5
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 9.8e-112 407.5 341 62.5
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 9.8e-112 407.5 341 62.5
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 9.8e-112 407.5 268 72.4
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 9.8e-112 407.5 342 62.0
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.7e-111 406.8 316 66.5
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 2.2e-111 406.4 327 66.4
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 2.9e-111 406.0 344 61.3
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 4.9e-111 405.2 339 62.2
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 3.2e-110 402.5 286 68.9
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 5.4e-110 401.7 342 61.7
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 1.2e-109 400.6 366 57.7
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 2.7e-109 399.4 340 61.2
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 2.7e-109 399.4 340 61.2
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 2.7e-109 399.4 340 61.2
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 6.0e-109 398.3 253 75.9
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 1.0e-108 397.5 268 74.3
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 3.9e-108 395.6 272 69.9
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 2.5e-107 392.9 336 62.2
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 4.3e-107 392.1 318 63.2
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 3.6e-106 389.0 318 63.8
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 8.9e-105 384.4 338 60.1
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 2.0e-104 383.3 351 59.0
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 2.6e-104 382.9 247 72.9
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 5.8e-104 381.7 245 73.1
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 2.2e-103 379.8 360 57.5
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 3.7e-103 379.0 338 60.1
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 4.1e-102 375.6 338 54.7
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 3.5e-101 372.5 250 72.0
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 3.0e-100 369.4 274 66.4
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.5e-99 367.1 362 53.6
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 2.5e-99 366.3 265 63.8
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 2.5e-99 366.3 269 61.7
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 2.1e-98 363.2 210 82.9
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 1.1e-97 360.9 324 55.9
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 1.4e-97 360.5 299 65.2
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 6.8e-97 358.2 210 80.0
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 3.4e-96 355.9 297 65.3
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 5.8e-96 355.1 273 63.0
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 1.9e-94 350.1 277 63.2
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 2.4e-94 349.7 207 78.3
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 2.1e-93 346.7 337 56.7
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 2.3e-92 343.2 229 72.9
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 6.6e-92 341.7 366 51.6
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 1.4e-86 323.9 258 60.1
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 4.6e-85 318.9 291 58.8
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 8.7e-84 314.7 242 59.5
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 1.6e-82 310.5 226 63.7
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 8.1e-82 308.1 242 59.5
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 1.7e-79 300.4 225 62.7
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 2.7e-69 266.5 232 62.1
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 7.9e-69 265.0 234 63.2
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 3.0e-68 263.1 238 62.6
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 3.3e-67 259.6 166 75.9
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 1.8e-65 253.8 293 47.1
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 4.9e-63 245.7 215 54.9
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 5.9e-56 222.2 232 54.3
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 1.0e-55 221.5 220 50.5
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 1.0e-55 221.5 183 56.3
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 1.2e-48 198.0 175 59.4
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 5.5e-46 189.1 108 81.5
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.3e-39 167.9 197 44.7
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 2.9e-39 166.8 165 53.9
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.8e-39 166.4 197 44.2
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.1e-37 160.6 197 43.1
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.6e-37 159.8 197 43.7
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 1.4e-36 157.9 100 73.0
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 4.1e-33 146.4 85 80.0
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 5.3e-33 146.0 97 75.3
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 2.6e-32 143.7 102 71.6
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.6e-32 143.7 176 43.2
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 2.2e-31 140.6 197 39.6
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 1.5e-27 127.9 77 74.0
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.7e-26 124.4 197 35.0
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 2.8e-26 123.6 87 64.4
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.4e-25 121.3 185 36.2
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.4e-25 121.3 185 36.2
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.6e-24 117.9 194 35.6
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 2.7e-24 117.1 164 44.5
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 4.5e-24 116.3 140 45.7
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.5e-24 116.3 197 34.0
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.8e-20 102.4 197 31.0
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 7.0e-17 92.4 180 32.2
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 3.6e-13 80.1 197 27.9
Medtr4g074270 Medicago truncatula HOM05D004663 ORTHO05D006325 6.3e-10 69.3 67 55.2
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.4e-09 66.2 103 35.9
Medtr3g063510 Medicago truncatula HOM05D004663 ORTHO05D006325 1.7e-07 61.2 57 54.4
AUR62002800 Chenopodium quinoa HOM05D004663 ORTHO05D006325 2.3e-07 60.8 34 73.5


User provided reference genes

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