Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 1.3e-175 619.8 338 100.0
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 2.6e-157 558.9 338 90.8
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 5.5e-155 551.2 338 89.3
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 9.4e-155 550.4 338 90.2
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 2.7e-154 548.9 338 89.1
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 7.9e-154 547.4 339 89.1
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 1.8e-153 546.2 339 89.1
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 1.8e-153 546.2 339 89.1
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.3e-153 545.8 338 87.0
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 2.3e-153 545.8 338 89.3
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 2.3e-153 545.8 338 89.3
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 2.3e-153 545.8 338 88.8
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 2.3e-153 545.8 338 89.6
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 3.0e-153 545.4 338 90.2
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 3.9e-153 545.0 339 88.8
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 3.9e-153 545.0 339 88.8
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 5.2e-153 544.7 338 88.2
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.1e-152 543.5 338 89.1
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 1.1e-152 543.5 338 88.8
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 1.1e-152 543.5 338 89.1
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 2.6e-152 542.3 338 88.2
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 4.4e-152 541.6 339 89.1
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 7.4e-152 540.8 338 87.6
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 1.3e-151 540.0 338 89.1
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 1.7e-151 539.7 338 88.2
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 2.8e-151 538.9 338 89.3
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 3.7e-151 538.5 338 84.0
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 8.2e-151 537.3 338 88.2
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 8.2e-151 537.3 338 88.2
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 1.8e-150 536.2 349 86.2
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 1.8e-150 536.2 338 88.2
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 2.4e-150 535.8 338 86.4
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 4.1e-150 535.0 338 87.9
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.2e-149 533.5 338 87.9
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.6e-149 533.1 341 87.4
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 3.5e-149 531.9 338 86.4
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 4.5e-149 531.6 338 87.3
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 5.9e-149 531.2 338 87.3
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 5.9e-149 531.2 338 87.6
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 5.9e-149 531.2 338 87.3
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 7.7e-149 530.8 356 84.0
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 7.7e-149 530.8 356 84.0
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 7.7e-149 530.8 341 86.8
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 1.3e-148 530.0 338 87.3
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 1.3e-148 530.0 338 87.3
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 1.7e-148 529.6 361 84.5
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 2.2e-148 529.3 338 87.0
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 3.8e-148 528.5 354 85.3
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 1.1e-147 526.9 340 86.5
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 1.5e-147 526.6 338 86.1
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.9e-147 526.2 338 80.5
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 1.9e-147 526.2 337 85.5
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 1.9e-147 526.2 337 85.5
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 7.2e-147 524.2 338 87.6
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 9.4e-147 523.9 338 87.0
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 2.7e-146 522.3 340 87.1
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 4.7e-146 521.5 340 86.8
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 6.1e-146 521.2 338 84.9
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 1.0e-145 520.4 355 84.2
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 1.4e-145 520.0 339 84.7
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 3.0e-145 518.8 338 84.6
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 5.2e-145 518.1 338 86.1
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 5.2e-145 518.1 339 84.7
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 1.5e-144 516.5 338 84.3
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 1.5e-144 516.5 339 84.4
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 2.0e-144 516.2 366 80.3
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 2.0e-144 516.2 338 87.0
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 3.3e-144 515.4 338 84.9
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 4.4e-144 515.0 339 82.0
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 5.7e-144 514.6 338 84.6
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 5.7e-144 514.6 331 87.3
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 7.5e-144 514.2 339 82.3
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 2.8e-143 512.3 339 85.5
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 3.7e-143 511.9 339 84.1
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 4.8e-143 511.5 339 81.4
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 4.8e-143 511.5 377 76.7
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 8.2e-143 510.8 372 79.0
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.8e-142 509.6 338 82.0
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 1.8e-142 509.6 338 85.5
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 9.1e-142 507.3 339 82.9
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 1.3e-140 503.4 338 84.3
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 1.7e-140 503.1 322 86.3
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.1e-139 500.4 341 80.6
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 4.2e-139 498.4 338 78.7
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 4.2e-139 498.4 350 81.7
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 7.2e-139 497.7 338 82.5
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 2.7e-138 495.7 346 81.2
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 1.0e-137 493.8 333 84.1
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.0e-137 493.8 339 81.7
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 3.0e-137 492.3 339 81.4
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 3.0e-137 492.3 339 81.4
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 8.8e-137 490.7 348 80.5
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 1.5e-136 490.0 322 86.6
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 4.4e-136 488.4 348 79.9
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 4.4e-136 488.4 322 85.7
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.2e-135 486.1 325 85.2
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.2e-135 486.1 325 85.2
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 6.3e-135 484.6 338 79.6
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 1.1e-134 483.8 332 82.5
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.7e-133 479.2 340 82.9
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 2.5e-131 472.6 368 75.0
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 1.6e-130 469.9 306 87.3
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.0e-129 465.7 369 76.2
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.0e-129 465.7 369 76.2
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 6.8e-129 464.5 338 71.6
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 7.5e-128 461.1 338 77.2
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 6.1e-122 441.4 339 76.4
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 4.4e-120 435.3 334 77.5
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 1.4e-118 430.3 284 84.2
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 3.2e-118 429.1 353 71.4
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 1.8e-113 413.3 275 87.6
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 5.2e-113 411.8 516 53.1
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 5.4e-110 401.7 225 87.6
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.3e-108 396.4 341 73.6
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 4.9e-103 378.6 321 72.6
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 5.4e-102 375.2 321 72.3
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 6.2e-98 361.7 256 84.4
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.1e-97 360.9 339 67.6
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.8e-97 360.1 280 75.4
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 2.7e-93 346.3 338 65.4
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 6.9e-89 331.6 382 49.0
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 3.6e-82 309.3 331 53.2
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 6.2e-82 308.5 165 90.3
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 3.7e-66 256.1 171 73.7
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 1.1e-65 254.6 212 78.8
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 4.6e-61 239.2 326 44.8
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 7.9e-53 211.8 116 84.5
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.6e-43 180.3 82 100.0
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 1.3e-42 177.9 166 65.7
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.2e-39 167.2 91 89.0
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 4.7e-37 159.5 90 93.3
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 4.7e-37 159.5 90 94.4
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 8.5e-23 112.1 55 94.5
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 5.5e-22 109.4 64 92.2
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 5.7e-19 99.4 200 33.5
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 3.1e-17 93.6 200 28.0
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.1e-14 85.1 64 65.6
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 4.7e-13 79.7 39 92.3
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.9e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.9e-12 75.5 41 90.2
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.2e-11 75.1 81 76.5
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.8e-10 70.5 45 75.6
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.7e-10 70.1 30 96.7


User provided reference genes

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