Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 3.8e-177 624.8 329 100.0
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 3.6e-127 458.8 333 72.4
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 6.2e-127 458.0 334 71.9
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 6.2e-127 458.0 333 75.7
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 8.9e-126 454.1 322 73.6
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 1.7e-124 449.9 328 71.3
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 4.9e-124 448.4 322 69.6
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 1.4e-123 446.8 309 72.2
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 1.9e-123 446.4 333 71.2
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 7.1e-123 444.5 311 71.7
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 1.2e-122 443.7 293 73.4
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 1.6e-122 443.4 335 68.4
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 4.6e-122 441.8 336 65.5
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.0e-122 441.4 337 68.5
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 6.0e-122 441.4 282 77.3
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 7.8e-122 441.0 332 67.2
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 2.3e-121 439.5 338 71.0
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 3.9e-121 438.7 309 69.3
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 8.6e-121 437.6 327 72.2
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 1.9e-120 436.4 337 67.1
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 5.6e-120 434.9 313 69.6
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 1.2e-119 433.7 320 71.9
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 3.6e-119 432.2 337 66.2
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 3.6e-119 432.2 310 69.0
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 6.2e-119 431.4 314 73.9
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.4e-118 430.3 338 69.8
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 1.4e-118 430.3 278 75.2
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 3.1e-118 429.1 314 72.0
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 3.1e-118 429.1 329 65.7
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 3.1e-118 429.1 321 74.5
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.2e-117 427.2 338 68.6
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 2.0e-117 426.4 327 67.0
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 3.4e-117 425.6 331 65.3
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 4.4e-117 425.2 282 72.7
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 7.6e-117 424.5 325 65.5
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.3e-116 423.7 338 69.2
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 2.2e-116 422.9 338 64.8
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 2.2e-116 422.9 332 66.9
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 2.9e-116 422.5 338 66.3
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 3.8e-116 422.2 341 64.2
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 8.4e-116 421.0 252 77.8
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 1.4e-115 420.2 317 66.2
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 1.9e-115 419.9 338 68.6
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 3.2e-115 419.1 246 78.9
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 5.4e-115 418.3 329 69.9
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 7.1e-115 417.9 331 64.0
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 2.1e-114 416.4 337 65.0
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 1.3e-113 413.7 328 64.9
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 3.0e-113 412.5 348 62.1
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 3.9e-113 412.1 332 65.7
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 8.7e-113 411.0 282 71.6
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 8.7e-113 411.0 282 71.6
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 1.9e-112 409.8 282 71.6
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 1.9e-112 409.8 282 71.6
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.9e-112 409.8 253 77.1
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 9.6e-112 407.5 330 68.5
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 1.6e-111 406.8 327 65.4
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 3.6e-111 405.6 328 67.7
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 8.1e-111 404.4 222 83.8
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 1.8e-110 403.3 321 62.6
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 3.1e-110 402.5 282 75.9
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 4.0e-110 402.1 331 62.5
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 6.9e-110 401.4 341 64.8
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 1.5e-109 400.2 334 60.8
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 2.6e-109 399.4 336 65.5
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 7.6e-109 397.9 309 63.4
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 7.6e-109 397.9 331 61.3
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 9.9e-109 397.5 318 62.3
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 1.7e-108 396.7 337 60.5
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 1.7e-108 396.7 329 62.3
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 2.2e-108 396.4 312 63.1
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 2.9e-108 396.0 318 63.5
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 3.8e-108 395.6 225 80.9
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 4.9e-108 395.2 327 61.2
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 6.4e-108 394.8 254 71.7
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 1.1e-107 394.0 221 81.4
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 1.4e-107 393.7 225 80.9
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 4.2e-107 392.1 225 80.9
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 4.2e-107 392.1 222 81.5
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 1.6e-106 390.2 330 61.8
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 1.5e-104 383.6 334 59.9
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 5.3e-102 375.2 220 78.6
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 4.2e-99 365.5 331 58.9
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 1.1e-96 357.5 338 56.5
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 3.3e-96 355.9 302 63.9
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 5.6e-96 355.1 353 55.0
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 1.8e-94 350.1 205 79.0
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 7.6e-93 344.7 222 73.9
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.9e-91 340.1 227 68.7
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.9e-91 340.1 227 68.7
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 9.3e-91 337.8 257 61.5
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 6.0e-90 335.1 266 69.2
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.5e-88 330.5 335 54.9
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 7.4e-88 328.2 334 54.8
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 1.0e-84 317.8 212 71.7
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 2.9e-84 316.2 487 43.3
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 7.9e-82 308.1 263 62.0
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 1.1e-80 304.3 220 63.2
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 7.6e-77 291.6 171 78.4
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 9.4e-75 284.6 167 78.4
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 1.2e-74 284.3 252 52.4
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 1.7e-71 273.9 308 45.1
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 2.5e-67 260.0 224 59.4
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 2.4e-62 243.4 144 78.5
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 5.3e-62 242.3 213 57.7
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 1.0e-60 238.0 227 62.6
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 1.1e-59 234.6 208 53.8
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 5.5e-59 232.3 212 68.4
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.2e-58 231.1 206 58.3
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 1.4e-57 227.6 245 53.1
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 1.9e-51 207.2 187 61.5
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 1.6e-45 187.6 156 60.3
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 1.6e-37 161.0 97 77.3
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 6.1e-34 149.1 109 67.0
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 1.8e-33 147.5 175 40.6
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.3e-27 126.3 154 48.1
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 1.8e-25 120.9 61 85.2
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 2.7e-21 107.1 110 50.9
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 8.6e-20 102.1 105 50.5
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.6e-13 81.3 45 82.2
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.6e-10 70.1 68 55.9
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.6e-10 70.1 68 55.9
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 6.4e-07 59.3 170 34.1


User provided reference genes

Program Settings