Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g10910 Coffea canephora HOM05D000361 ORTHO05D005063 9.6e-37 156.4 82 100.0
Cc06_g23450 Coffea canephora HOM05D000361 ORTHO05D008498 2.0e-26 122.1 67 94.0
Oeu028794.1 Olea europaea HOM05D000361 ORTHO05D008498 9.3e-24 113.2 67 85.1
Peaxi162Scf00347g00329 Petunia axillaris HOM05D000361 ORTHO05D008498 6.0e-23 110.5 67 83.6
SGA_v2.0_scaffold229G43357 Striga asiatica HOM05D000361 ORTHO05D008498 6.0e-23 110.5 67 85.1
SGA_v2.0_scaffold45G17059 Striga asiatica HOM05D000361 ORTHO05D008498 6.0e-23 110.5 67 85.1
MSTRG.26309 Avicennia marina HOM05D000361 ORTHO05D008498 7.9e-23 110.2 67 85.1
unitig_62.g23480 Utricularia gibba HOM05D000361 ORTHO05D008498 1.0e-22 109.8 67 83.6
arahy.Tifrunner.gnm1.ann1.R3IAX4 Arachis hypogaea HOM05D000361 ORTHO05D008498 1.3e-22 109.4 67 80.6
Solyc07g005020.3 Solanum lycopersicum HOM05D000361 ORTHO05D008498 1.3e-22 109.4 67 82.1
Sopen07g001130 Solanum pennellii HOM05D000361 ORTHO05D008498 1.3e-22 109.4 67 82.1
PGSC0003DMG400011837 Solanum tuberosum HOM05D000361 ORTHO05D008498 1.3e-22 109.4 67 82.1
Migut.K00361 Erythranthe guttata HOM05D000361 ORTHO05D008498 3.0e-22 108.2 67 83.6
arahy.Tifrunner.gnm1.ann1.YFDY0T Arachis hypogaea HOM05D000361 ORTHO05D008498 3.9e-22 107.8 67 77.6
ClCG11G003620 Citrullus lanatus HOM05D000361 ORTHO05D008498 3.9e-22 107.8 67 80.6
CiPaw.15G171000 Carya illinoinensis HOM05D000361 ORTHO05D008498 5.1e-22 107.5 67 80.6
Hma1.2p1_0028F.1_g017220 Hydrangea macrophylla HOM05D000361 ORTHO05D008498 5.1e-22 107.5 67 80.6
GSVIVG01001046001 Vitis vinifera HOM05D000361 ORTHO05D008498 5.1e-22 107.5 67 80.6
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 6.7e-22 107.1 67 80.6
Haze_19294 Corylus avellana HOM05D000361 ORTHO05D008498 6.7e-22 107.1 67 80.6
MELO3C004448.2 Cucumis melo HOM05D000361 ORTHO05D008498 6.7e-22 107.1 67 80.6
CsaV3_2G003500 Cucumis sativus L. HOM05D000361 ORTHO05D008498 6.7e-22 107.1 67 80.6
Dinv23299 Davidia involucrata HOM05D000361 ORTHO05D008498 8.7e-22 106.7 67 80.6
QL02p091753 Quercus lobata HOM05D000361 ORTHO05D008498 8.7e-22 106.7 67 80.6
Ca_21604_v3 Cicer arietinum L. HOM05D000361 ORTHO05D008498 1.1e-21 106.3 67 79.1
Nn8g39756 Nelumbo nucifera HOM05D000361 ORTHO05D008498 1.1e-21 106.3 67 77.6
CAN.G520.36 Capsicum annuum HOM05D000361 ORTHO05D008498 1.5e-21 105.9 67 79.1
Migut.K00660 Erythranthe guttata HOM05D000361 ORTHO05D008498 1.5e-21 105.9 67 82.1
Aqoxy1G00614 Aquilegia oxysepala HOM05D000361 ORTHO05D008498 1.9e-21 105.5 67 76.1
Lj7A452G24 Lonicera japonica HOM05D000361 ORTHO05D008498 1.9e-21 105.5 67 79.1
Sed0027129 Sechium edule HOM05D000361 ORTHO05D008498 1.9e-21 105.5 67 79.1
vmacro21875 Vaccinium macrocarpon HOM05D000361 ORTHO05D008498 1.9e-21 105.5 67 79.1
CSS0046490 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D008498 2.5e-21 105.1 67 79.1
TPR.G15812 Trifolium pratense HOM05D000361 ORTHO05D008498 2.5e-21 105.1 67 79.1
TWI63G1788 Tripterygium wilfordii HOM05D000361 ORTHO05D008498 2.5e-21 105.1 67 79.1
Prupe.7G252700 Prunus persica HOM05D000361 ORTHO05D008498 3.3e-21 104.8 67 79.1
Ah.14g078530 Amaranthus hybridus HOM05D000361 ORTHO05D008498 4.3e-21 104.4 67 77.6
Glyma.13G156400 Glycine max HOM05D000361 ORTHO05D008498 4.3e-21 104.4 67 77.6
Glyma.17G104000 Glycine max HOM05D000361 ORTHO05D008498 4.3e-21 104.4 67 77.6
Lalb_Chr07g0179611 Lupinus albus HOM05D000361 ORTHO05D008498 5.6e-21 104.0 67 77.6
TAR625G0680 Trochodendron aralioides HOM05D000361 ORTHO05D008498 5.6e-21 104.0 67 74.6
EL10Ac8g18836 Beta vulgaris HOM05D000361 ORTHO05D008498 7.4e-21 103.6 67 79.1
Medtr4g116870 Medicago truncatula HOM05D000361 ORTHO05D008498 7.4e-21 103.6 67 77.6
DCAR_014827 Daucus carota HOM05D000361 ORTHO05D008498 1.3e-20 102.8 67 76.1
Nitab4.5_0000416g0090 Nicotiana tabacum HOM05D000361 ORTHO05D008498 1.3e-20 102.8 67 77.6
Nitab4.5_0010178g0020 Nicotiana tabacum HOM05D000361 ORTHO05D008498 1.3e-20 102.8 67 77.6
Rhsim01G0049000 Rhododendron simsii HOM05D007151 ORTHO05D008498 1.3e-20 102.8 67 79.1
Hund21617 Selenicereus undatus HOM05D000361 ORTHO05D008498 1.3e-20 102.8 67 77.6
VMungo1215G2534 Vigna mungo HOM05D000361 ORTHO05D008498 1.3e-20 102.8 67 76.1
Cc10_g11510 Coffea canephora HOM05D000361 ORTHO05D008498 1.6e-20 102.4 67 85.1
ECA236G1460 Erigeron canadensis HOM05D000361 ORTHO05D008498 1.6e-20 102.4 67 77.6
Phvul.003G175800 Phaseolus vulgaris HOM05D000361 ORTHO05D008498 1.6e-20 102.4 67 76.1
Psat4g032920 Pisum sativum HOM05D000361 ORTHO05D008498 1.6e-20 102.4 67 76.1
HanXRQChr05g0141521 Helianthus annuus HOM05D000361 ORTHO05D008498 2.1e-20 102.1 67 76.1
RcHm_v2.0_Chr2g0086411 Rosa chinensis HOM05D000361 ORTHO05D008498 2.1e-20 102.1 67 76.1
CANSAT11G1655 Cannabis sativa HOM05D000361 ORTHO05D008498 2.8e-20 101.7 67 74.6
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 2.8e-20 101.7 67 76.1
Lj4g0004865 Lotus japonicus HOM05D000361 ORTHO05D008498 2.8e-20 101.7 67 77.6
AUR62011272 Chenopodium quinoa HOM05D000361 ORTHO05D008498 3.7e-20 101.3 67 76.1
MD02G1011900 Malus domestica HOM05D000361 ORTHO05D008498 3.7e-20 101.3 67 76.1
MD15G1157500 Malus domestica HOM05D000361 ORTHO05D008498 3.7e-20 101.3 67 76.1
Eucgr.C00405 Eucalyptus grandis HOM05D000361 ORTHO05D008498 4.8e-20 100.9 67 74.6
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 4.8e-20 100.9 67 74.6
PSO339G2602 Papaver somniferum HOM05D000361 ORTHO05D008498 6.2e-20 100.5 67 74.6
PSO384G4385 Papaver somniferum HOM05D000361 ORTHO05D008498 8.1e-20 100.1 67 73.1
PGR142G3728 Punica granatum HOM05D000361 ORTHO05D008498 8.1e-20 100.1 67 74.6
Sc18g0007590 Simmondsia chinensis HOM05D000361 ORTHO05D008498 8.1e-20 100.1 67 74.6
CBR_g37700 Chara braunii HOM05D000361 ORTHO05D008498 1.1e-19 99.8 67 74.6
FvH4_1g01490 Fragaria vesca HOM05D000361 ORTHO05D008498 1.1e-19 99.8 67 74.6
FAN19G0984 Fragaria x ananassa HOM05D000361 ORTHO05D008498 1.1e-19 99.8 67 74.6
FAN26G0198 Fragaria x ananassa HOM05D000361 ORTHO05D008498 1.1e-19 99.8 67 74.6
FAN28G2637 Fragaria x ananassa HOM05D000361 ORTHO05D008498 1.1e-19 99.8 67 74.6
CDE12G0216 Ceratophyllum demersum HOM05D000361 ORTHO05D008498 1.4e-19 99.4 67 70.1
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 1.4e-19 99.4 67 73.1
Potri.006G188700 Populus trichocarpa HOM05D000361 ORTHO05D008498 1.4e-19 99.4 67 71.6
Ciclev10007588m.g Citrus clementina HOM05D000361 ORTHO05D008498 1.8e-19 99.0 67 74.6
THA.LOC104808931 Tarenaya hassleriana HOM05D000361 ORTHO05D008498 1.8e-19 99.0 67 74.6
Atru.chr7.190 Acer truncatum HOM05D000361 ORTHO05D008498 2.4e-19 98.6 67 74.6
SEGI_11719 Sequoiadendron giganteum HOM05D000361 ORTHO05D008498 2.4e-19 98.6 67 68.7
BcaC01g03150 Brassica carinata HOM05D000361 ORTHO05D008498 3.1e-19 98.2 67 71.6
A03p44710 Brassica napus HOM05D000361 ORTHO05D008498 3.1e-19 98.2 67 71.6
C03p55560 Brassica napus HOM05D000361 ORTHO05D008498 3.1e-19 98.2 67 71.6
BolC3t17833H Brassica oleracea HOM05D000361 ORTHO05D008498 3.1e-19 98.2 67 71.6
BraA03t13606Z Brassica rapa HOM05D000361 ORTHO05D008498 3.1e-19 98.2 67 71.6
Potri.018G112800 Populus trichocarpa HOM05D000361 ORTHO05D008498 3.1e-19 98.2 67 70.1
Sp3g25380 Schrenkiella parvula HOM05D000361 ORTHO05D008498 3.1e-19 98.2 67 71.6
Aa31sc130G100 Aethionema arabicum HOM05D000361 ORTHO05D008498 4.0e-19 97.8 67 71.6
Thhalv10022493m.g Eutrema salsugineum HOM05D000361 ORTHO05D008498 4.0e-19 97.8 67 71.6
CARHR104070 Cardamine hirsuta HOM05D000361 ORTHO05D008498 6.9e-19 97.1 67 71.6
Duzib168G1075 Durio zibethinus HOM05D000361 ORTHO05D008498 6.9e-19 97.1 67 73.1
Sabra18G0095900 Salix brachista HOM05D000361 ORTHO05D008498 6.9e-19 97.1 67 68.7
Manes.06G040400 Manihot esculenta HOM05D000361 ORTHO05D008498 1.5e-18 95.9 67 68.7
COL.COLO4_18724 Corchorus olitorius HOM05D000361 ORTHO05D008498 2.6e-18 95.1 67 70.1
Lsat_1_v5_gn_8_60021 Lactuca sativa HOM05D000361 ORTHO05D008498 3.4e-18 94.7 67 71.6
Os02g0797400 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D008498 7.6e-18 93.6 67 70.1
HPP92_010438 Vanilla planifolia HOM05D000361 ORTHO05D008498 7.6e-18 93.6 67 70.1
Carub.0013s0016 Capsella rubella HOM05D000361 ORTHO05D008498 1.0e-17 93.2 67 68.7
Gohir.A13G185700 Gossypium hirsutum HOM05D000361 ORTHO05D008498 1.0e-17 93.2 67 68.7
Gorai.013G218100 Gossypium raimondii HOM05D000361 ORTHO05D008498 1.0e-17 93.2 67 68.7
Zm00001eb257900 Zea mays HOM05D000361 ORTHO05D008498 1.0e-17 93.2 67 68.7
Thecc.09G036800 Theobroma cacao HOM05D000361 ORTHO05D008498 1.7e-17 92.4 67 68.7
Gohir.D13G192200 Gossypium hirsutum HOM05D000361 ORTHO05D008498 2.2e-17 92.0 67 67.2
AL3G44220 Arabidopsis lyrata HOM05D000361 ORTHO05D008498 2.9e-17 91.7 67 70.1
AT2G07690 Arabidopsis thaliana HOM05D000361 ORTHO05D008498 2.9e-17 91.7 67 70.1
AagrBONN_evm.TU.Sc2ySwM_368.335 Anthoceros agrestis HOM05D000361 ORTHO05D008498 3.8e-17 91.3 67 67.2
Gohir.A05G050000 Gossypium hirsutum HOM05D000361 ORTHO05D008498 5.5e-16 87.4 67 62.7
ATR0629G127 Amborella trichopoda HOM05D000361 ORTHO05D008498 2.1e-15 85.5 67 61.2
SMO340G0120 Selaginella moellendorffii HOM05D000361 ORTHO05D008498 1.8e-14 82.4 67 61.2
Pp3c1_32870 Physcomitrium patens HOM05D000361 ORTHO05D008498 2.3e-14 82.0 67 62.7
PSO493G0003 Papaver somniferum HOM05D000361 ORTHO05D008498 5.1e-14 80.9 56 66.1
Mapoly0006s0287 Marchantia polymorpha HOM05D000361 ORTHO05D008498 2.1e-12 75.5 68 58.8
Cre01.g023150 Chlamydomonas reinhardtii HOM05D000361 ORTHO05D008498 1.4e-11 72.8 68 55.9
MCO13G108 Micromonas commoda HOM05D000361 ORTHO05D008498 4.5e-10 67.8 67 50.7
PRCOL_00002108 Prasinoderma coloniale HOM05D000361 ORTHO05D008498 8.4e-09 63.5 67 50.7
DCAR_017896 Daucus carota HOM05D000361 ORTHO05D014446 1.8e-06 55.8 59 52.5
MCO15G371 Micromonas commoda HOM05D000361 ORTHO05D007806 3.9e-06 54.7 71 45.1
Mapoly0007s0227 Marchantia polymorpha HOM05D000361 ORTHO05D008094 5.1e-06 54.3 82 45.1
CBR_g21769 Chara braunii HOM05D000361 ORTHO05D007806 6.7e-06 53.9 71 45.1
Cre16.g665950 Chlamydomonas reinhardtii HOM05D000361 ORTHO05D007806 6.7e-06 53.9 71 43.7
COL.COLO4_18718 Corchorus olitorius HOM05D000361 ORTHO05D016785 6.7e-06 53.9 46 65.2
Os01g0544450 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D008094 6.7e-06 53.9 66 47.0
Hund20156 Selenicereus undatus HOM05D000361 ORTHO05D007806 8.7e-06 53.5 71 47.9


User provided reference genes

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