Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g09260 Coffea canephora HOM05D005108 ORTHO05D006171 2.5e-116 422.2 219 100.0
Cc02_g32000 Coffea canephora HOM05D005108 ORTHO05D006171 3.3e-84 315.5 219 79.9
Dinv24598 Davidia involucrata HOM05D005108 ORTHO05D006171 2.7e-78 295.8 218 74.8
CSS0042253 Camellia sinensis var. sinensis HOM05D005108 ORTHO05D006171 4.6e-78 295.0 217 75.1
GSVIVG01027314001 Vitis vinifera HOM05D005108 ORTHO05D006171 5.1e-77 291.6 218 73.4
Eucgr.J00313 Eucalyptus grandis HOM05D005108 ORTHO05D006171 8.7e-77 290.8 217 73.3
DCAR_006625 Daucus carota HOM05D005108 ORTHO05D006171 4.3e-76 288.5 218 72.9
vmacro13787 Vaccinium macrocarpon HOM05D005108 ORTHO05D006171 4.3e-76 288.5 218 72.0
Peaxi162Scf00647g00324 Petunia axillaris HOM05D005108 ORTHO05D006171 5.6e-76 288.1 218 72.5
CAN.G134.52 Capsicum annuum HOM05D005108 ORTHO05D006171 1.3e-75 287.0 218 72.0
CiPaw.01G118100 Carya illinoinensis HOM05D005108 ORTHO05D006171 1.3e-75 287.0 218 72.0
Nitab4.5_0001611g0100 Nicotiana tabacum HOM05D005108 ORTHO05D006171 1.3e-75 287.0 218 72.0
Manes.10G065200 Manihot esculenta HOM05D005108 ORTHO05D006171 2.1e-75 286.2 216 72.2
MBI19_g19123_MAGBIO Magnolia biondii HOM05D005108 ORTHO05D006171 2.8e-75 285.8 218 69.7
FvH4_7g05000 Fragaria vesca HOM05D005108 ORTHO05D006171 3.6e-75 285.4 218 70.2
Potri.010G247000 Populus trichocarpa HOM05D005108 ORTHO05D006171 3.6e-75 285.4 218 72.5
Prupe.2G060900 Prunus persica HOM05D005108 ORTHO05D006171 4.8e-75 285.0 218 72.0
FAN06G2034 Fragaria x ananassa HOM05D005108 ORTHO05D006171 6.2e-75 284.6 218 70.2
Sopen01g040610 Solanum pennellii HOM05D005108 ORTHO05D006171 8.1e-75 284.3 218 71.6
Sc09g0004910 Simmondsia chinensis HOM05D005108 ORTHO05D006171 1.4e-74 283.5 218 71.6
Lalb_Chr10g0096011 Lupinus albus HOM05D005108 ORTHO05D006171 1.8e-74 283.1 218 71.6
Solyc01g096900.3 Solanum lycopersicum HOM05D005108 ORTHO05D006171 1.8e-74 283.1 218 71.1
Rhsim07G0072200 Rhododendron simsii HOM05D005108 ORTHO05D006171 2.4e-74 282.7 218 71.1
FAN03G1083 Fragaria x ananassa HOM05D005108 ORTHO05D006171 3.1e-74 282.3 218 69.7
Sabra10G0192400 Salix brachista HOM05D005108 ORTHO05D006171 3.1e-74 282.3 218 71.6
TAR633G2703 Trochodendron aralioides HOM05D005108 ORTHO05D006171 3.1e-74 282.3 218 69.7
Duzib106G1854 Durio zibethinus HOM05D005108 ORTHO05D006171 5.3e-74 281.6 218 71.1
RcHm_v2.0_Chr1g0331271 Rosa chinensis HOM05D005108 ORTHO05D006171 5.3e-74 281.6 218 69.3
Migut.B01161 Erythranthe guttata HOM05D005108 ORTHO05D006171 9.0e-74 280.8 218 70.2
Actinidia19615 Actinidia chinensis HOM05D005108 ORTHO05D006171 1.2e-73 280.4 218 71.6
CANSAT56G0991 Cannabis sativa HOM05D005108 ORTHO05D006171 1.2e-73 280.4 218 70.2
Cfa014950 Carpinus fangiana HOM05D005108 ORTHO05D006171 1.5e-73 280.0 218 68.8
Atru.chr12.1231 Acer truncatum HOM05D005108 ORTHO05D006171 2.6e-73 279.3 216 71.8
MD07G1054300 Malus domestica HOM05D005108 ORTHO05D006171 2.6e-73 279.3 218 70.2
Nitab4.5_0005056g0040 Nicotiana tabacum HOM05D005108 ORTHO05D006171 3.4e-73 278.9 231 68.4
AUR62034097 Chenopodium quinoa HOM05D005108 ORTHO05D006171 4.5e-73 278.5 218 70.6
MSTRG.20478 Avicennia marina HOM05D005108 ORTHO05D006171 5.8e-73 278.1 218 69.3
EL10Ac4g08769 Beta vulgaris HOM05D005108 ORTHO05D006171 7.6e-73 277.7 218 71.6
PSO541G5178 Papaver somniferum HOM05D005108 ORTHO05D006171 7.6e-73 277.7 218 69.3
Hma1.2p1_0892F.1_g233240 Hydrangea macrophylla HOM05D005108 ORTHO05D006171 9.9e-73 277.3 237 66.7
AUR62014305 Chenopodium quinoa HOM05D005108 ORTHO05D006171 1.7e-72 276.6 218 70.2
Lsat_1_v5_gn_2_64500 Lactuca sativa HOM05D005108 ORTHO05D006171 1.7e-72 276.6 218 69.7
PSO675G3383 Papaver somniferum HOM05D005108 ORTHO05D006171 1.7e-72 276.6 218 68.8
Nn2g14646 Nelumbo nucifera HOM05D005108 ORTHO05D006171 2.2e-72 276.2 217 69.1
Thecc.10G129800 Theobroma cacao HOM05D005108 ORTHO05D006171 2.2e-72 276.2 217 70.0
Gorai.012G020500 Gossypium raimondii HOM05D005108 ORTHO05D006171 2.9e-72 275.8 217 69.1
ECA238G1701 Erigeron canadensis HOM05D005108 ORTHO05D006171 3.8e-72 275.4 218 70.6
Gohir.D04G017700 Gossypium hirsutum HOM05D005108 ORTHO05D006171 3.8e-72 275.4 217 69.1
Sed0020738 Sechium edule HOM05D005108 ORTHO05D006171 3.8e-72 275.4 218 69.3
Glyma.09G120200 Glycine max HOM05D005108 ORTHO05D006171 4.9e-72 275.0 218 69.3
Phvul.003G022300 Phaseolus vulgaris HOM05D005108 ORTHO05D006171 4.9e-72 275.0 218 69.3
TWI15G0284 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 4.9e-72 275.0 218 69.3
Ca_14181_v3 Cicer arietinum L. HOM05D005108 ORTHO05D006171 6.4e-72 274.6 218 68.3
CsaV3_6G035790 Cucumis sativus L. HOM05D005108 ORTHO05D006171 6.4e-72 274.6 218 69.7
PGR044G2262 Punica granatum HOM05D005108 ORTHO05D006171 6.4e-72 274.6 218 68.8
SalBow8G0010 Salvia bowleyana HOM05D005108 ORTHO05D006171 6.4e-72 274.6 217 68.7
MELO3C011386.2 Cucumis melo HOM05D005108 ORTHO05D006171 1.4e-71 273.5 218 69.7
arahy.Tifrunner.gnm1.ann1.3FCU7M Arachis hypogaea HOM05D005108 ORTHO05D006171 1.9e-71 273.1 218 68.3
Gohir.A05G398300 Gossypium hirsutum HOM05D005108 ORTHO05D006171 1.9e-71 273.1 217 68.7
HanXRQChr14g0446691 Helianthus annuus HOM05D005108 ORTHO05D006171 2.4e-71 272.7 218 69.3
Lj2g0000078 Lotus japonicus HOM05D005108 ORTHO05D006171 2.4e-71 272.7 218 68.8
SGA_v2.0_scaffold244G44358 Striga asiatica HOM05D005108 ORTHO05D006171 2.4e-71 272.7 218 67.4
COL.COLO4_28912 Corchorus olitorius HOM05D005108 ORTHO05D006171 9.3e-71 270.8 217 69.1
TPR.G36949 Trifolium pratense HOM05D005108 ORTHO05D006171 1.2e-70 270.4 218 67.4
COL.COLO4_28907 Corchorus olitorius HOM05D005108 ORTHO05D006171 1.6e-70 270.0 217 68.7
Medtr1g031690 Medicago truncatula HOM05D005108 ORTHO05D006171 2.7e-70 269.2 218 66.5
MD02G1265100 Malus domestica HOM05D005108 ORTHO05D006171 6.0e-70 268.1 218 69.3
ATR0068G093 Amborella trichopoda HOM05D005108 ORTHO05D006171 7.9e-70 267.7 218 65.1
Psat6g044120 Pisum sativum HOM05D005108 ORTHO05D006171 1.3e-69 266.9 218 67.0
QL05p027656 Quercus lobata HOM05D005108 ORTHO05D006171 2.3e-69 266.2 217 68.2
Glyma.07G166000 Glycine max HOM05D005108 ORTHO05D006171 3.0e-69 265.8 219 68.0
unitig_747.g21367 Utricularia gibba HOM05D005108 ORTHO05D006171 5.1e-69 265.0 216 67.1
ClCG08G010770 Citrullus lanatus HOM05D005108 ORTHO05D006171 6.7e-69 264.6 244 63.1
A03p36700 Brassica napus HOM05D005108 ORTHO05D006171 2.5e-68 262.7 217 67.3
BraA03t12833Z Brassica rapa HOM05D005108 ORTHO05D006171 2.5e-68 262.7 217 67.3
Oeu013050.3 Olea europaea HOM05D005108 ORTHO05D006171 3.3e-68 262.3 262 59.2
C03p44330 Brassica napus HOM05D005108 ORTHO05D006171 4.3e-68 261.9 217 67.3
BolC3t16703H Brassica oleracea HOM05D005108 ORTHO05D006171 4.3e-68 261.9 217 67.3
THA.LOC104826959 Tarenaya hassleriana HOM05D005108 ORTHO05D006171 4.3e-68 261.9 217 65.0
Os03g0812000 Oryza sativa ssp. japonica HOM05D005108 ORTHO05D006171 1.3e-67 260.4 218 63.8
AT3G10690 Arabidopsis thaliana HOM05D005108 ORTHO05D006171 2.8e-67 259.2 217 65.4
Aqoxy6G00412 Aquilegia oxysepala HOM05D005108 ORTHO05D006171 4.8e-67 258.5 219 66.2
Carub.0003s0992 Capsella rubella HOM05D005108 ORTHO05D006171 4.8e-67 258.5 217 65.4
CARHR085270 Cardamine hirsuta HOM05D005108 ORTHO05D006171 4.8e-67 258.5 216 65.7
AL3G22160 Arabidopsis lyrata HOM05D005108 ORTHO05D006171 6.2e-67 258.1 217 65.0
Sp3g09010 Schrenkiella parvula HOM05D005108 ORTHO05D006171 6.2e-67 258.1 217 65.4
SGA_v2.0_scaffold164G38128 Striga asiatica HOM05D005108 ORTHO05D006171 8.1e-67 257.7 217 64.1
Thhalv10020005m.g Eutrema salsugineum HOM05D005108 ORTHO05D006171 2.4e-66 256.1 217 64.5
Zm00001eb212160 Zea mays HOM05D005108 ORTHO05D006171 2.4e-66 256.1 218 63.3
Aa31LG3G3550 Aethionema arabicum HOM05D005108 ORTHO05D006171 6.9e-66 254.6 217 64.1
FAN10G0981 Fragaria x ananassa HOM05D005108 ORTHO05D006171 8.4e-64 247.7 193 68.4
FAN01G1063 Fragaria x ananassa HOM05D005108 ORTHO05D006171 2.5e-63 246.1 193 67.9
Haze_11639 Corylus avellana HOM05D005108 ORTHO05D006171 1.3e-61 240.4 218 62.8
SEGI_06230 Sequoiadendron giganteum HOM05D005108 ORTHO05D006171 2.3e-61 239.6 218 57.8
arahy.Tifrunner.gnm1.ann1.TCCJ6Y Arachis hypogaea HOM05D005108 ORTHO05D006171 2.1e-59 233.0 218 61.5
RcHm_v2.0_Chr1g0331301 Rosa chinensis HOM05D005108 ORTHO05D006171 4.1e-58 228.8 181 65.7
Pp3c8_18800 Physcomitrium patens HOM05D005108 ORTHO05D006171 9.7e-52 207.6 216 50.9
Lj7A491G32 Lonicera japonica HOM05D005108 ORTHO05D006171 1.8e-50 203.4 223 56.1
Mapoly0010s0185 Marchantia polymorpha HOM05D005108 ORTHO05D006171 1.0e-48 197.6 219 47.5
SMO200G0101 Selaginella moellendorffii HOM05D005108 ORTHO05D006171 1.6e-46 190.3 217 48.4
CBR_g16891 Chara braunii HOM05D005108 ORTHO05D006171 2.6e-41 172.9 217 44.2
TWI15G0159 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 4.5e-41 172.2 132 68.2
Ciclev10014605m.g Citrus clementina HOM05D005108 ORTHO05D006171 2.8e-35 152.9 117 70.1
SHI21238 Sapria himalayana HOM05D005108 ORTHO05D006171 2.6e-33 146.4 116 67.2
Ciclev10017460m.g Citrus clementina HOM05D005108 ORTHO05D006171 1.2e-28 131.0 101 70.3
Cpa.g.sc54.41 Carica papaya HOM05D005108 ORTHO05D006171 1.9e-23 113.6 94 67.0
SHI21237 Sapria himalayana HOM05D005108 ORTHO05D006171 6.1e-22 108.6 101 60.4
Cpa.g.sc54.44 Carica papaya HOM05D005108 ORTHO05D006171 2.4e-18 96.7 104 55.8
MCO10G205 Micromonas commoda HOM05D005108 ORTHO05D006171 2.7e-17 93.2 224 27.2
AagrBONN_evm.TU.Sc2ySwM_344.4532 Anthoceros agrestis HOM05D005108 ORTHO05D006171 2.2e-11 73.6 87 47.1
HPP92_019017 Vanilla planifolia HOM05D005108 ORTHO05D006171 3.1e-10 69.7 62 62.9


User provided reference genes

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