Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 7.2e-170 600.5 307 100.0
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 1.4e-133 479.9 307 80.5
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 9.5e-130 467.2 311 75.2
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 8.9e-128 460.7 310 77.7
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 2.6e-127 459.1 311 74.6
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 7.5e-127 457.6 313 76.0
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.7e-126 456.4 313 74.4
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 1.9e-125 453.0 311 74.9
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 1.9e-125 453.0 313 74.1
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 4.1e-125 451.8 311 73.6
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 2.7e-124 449.1 317 74.4
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.7e-124 449.1 313 75.7
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 4.6e-124 448.4 317 74.1
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 6.0e-124 448.0 309 77.0
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 7.8e-124 447.6 313 73.5
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 5.0e-123 444.9 309 76.1
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.1e-122 443.7 313 74.8
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 1.9e-122 443.0 317 73.5
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 1.9e-122 443.0 311 75.2
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 1.9e-122 443.0 317 74.1
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 2.5e-122 442.6 310 75.2
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 4.3e-122 441.8 311 74.6
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 5.6e-122 441.4 310 73.2
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 9.5e-122 440.7 315 72.7
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 9.5e-122 440.7 315 72.7
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 1.2e-121 440.3 317 72.6
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 1.2e-121 440.3 310 75.2
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 1.6e-121 439.9 311 74.0
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.6e-121 439.9 313 74.4
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 2.1e-121 439.5 311 72.3
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 8.1e-121 437.6 312 73.7
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 8.1e-121 437.6 312 73.7
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 1.4e-120 436.8 310 74.5
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 2.3e-120 436.0 311 72.3
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 8.9e-120 434.1 312 71.5
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 1.5e-119 433.3 317 72.6
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.5e-119 433.3 312 73.4
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.4e-119 432.2 309 73.8
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 3.4e-119 432.2 333 70.3
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 4.4e-119 431.8 313 73.2
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 4.4e-119 431.8 314 71.7
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 5.8e-119 431.4 309 73.8
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 5.8e-119 431.4 309 73.8
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 5.8e-119 431.4 310 73.5
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 7.5e-119 431.0 312 73.7
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 7.5e-119 431.0 311 71.1
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 1.3e-118 430.3 317 71.3
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 2.2e-118 429.5 311 72.0
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 2.2e-118 429.5 307 72.6
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 3.7e-118 428.7 310 73.5
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 3.7e-118 428.7 307 73.0
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 4.9e-118 428.3 307 72.0
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 6.4e-118 427.9 311 72.7
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 1.9e-117 426.4 320 70.9
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 2.4e-117 426.0 313 72.8
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 2.4e-117 426.0 308 72.7
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 2.4e-117 426.0 308 72.7
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 9.2e-117 424.1 312 73.7
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 3.5e-116 422.2 314 72.0
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 3.5e-116 422.2 307 71.3
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 6.0e-116 421.4 311 71.4
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 1.3e-115 420.2 314 69.4
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 2.3e-115 419.5 346 66.2
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 2.3e-115 419.5 309 72.2
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 6.6e-115 417.9 315 69.2
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 6.6e-115 417.9 315 68.6
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 1.5e-114 416.8 313 69.3
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 1.9e-114 416.4 315 70.8
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 2.5e-114 416.0 349 65.3
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 2.5e-114 416.0 315 68.3
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 3.3e-114 415.6 315 71.1
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 7.3e-114 414.5 319 69.3
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 7.3e-114 414.5 309 69.9
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 9.5e-114 414.1 307 70.0
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 2.8e-113 412.5 307 70.7
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 4.7e-113 411.8 307 70.4
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 6.2e-113 411.4 310 71.0
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 1.4e-112 410.2 313 69.6
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 1.8e-112 409.8 314 68.8
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 2.3e-112 409.5 311 70.7
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 3.1e-112 409.1 315 69.5
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 4.0e-112 408.7 314 67.8
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 6.8e-112 407.9 313 68.1
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 1.2e-111 407.1 307 71.0
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 1.2e-111 407.1 307 71.0
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 4.4e-111 405.2 325 68.0
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 5.8e-111 404.8 307 71.0
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 5.8e-111 404.8 307 71.0
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 5.8e-111 404.8 307 71.0
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 3.7e-110 402.1 309 68.3
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 3.7e-110 402.1 317 67.8
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 8.4e-110 401.0 307 69.4
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 7.1e-109 397.9 315 67.3
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 1.6e-108 396.7 271 77.9
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.1e-106 390.6 221 89.6
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 7.3e-106 387.9 291 70.8
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 1.6e-105 386.7 309 68.3
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 8.1e-105 384.4 315 66.0
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 4.4e-103 378.6 243 79.0
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 7.6e-103 377.9 283 71.0
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 2.4e-101 372.9 339 59.9
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 9.3e-101 370.9 335 60.0
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.1e-98 364.0 262 73.3
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 1.9e-98 363.2 350 58.3
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 8.1e-97 357.8 270 73.0
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 7.1e-93 344.7 269 67.3
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 9.3e-93 344.4 203 84.2
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 9.3e-93 344.4 321 58.9
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 7.9e-92 341.3 304 58.2
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.0e-91 340.9 267 68.2
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 1.1e-90 337.4 211 81.0
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 1.8e-88 330.1 311 61.1
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 1.5e-87 327.0 307 59.6
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 4.2e-85 318.9 312 57.4
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 7.9e-84 314.7 239 68.6
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 7.9e-84 314.7 307 58.3
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 4.5e-79 298.9 185 81.1
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 1.2e-68 264.2 374 44.7
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 3.6e-68 262.7 214 66.8
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 1.0e-67 261.2 264 58.3
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 1.5e-66 257.3 294 52.0
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 1.1e-64 251.1 257 56.8
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 7.4e-58 228.4 191 68.1
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 1.6e-52 210.7 195 59.0
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 3.7e-49 199.5 308 43.5
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 5.9e-47 192.2 117 84.6
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 5.0e-46 189.1 224 46.4
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 2.5e-45 186.8 239 44.8
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 1.3e-41 174.5 194 52.1
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.1e-40 171.4 122 70.5
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 5.9e-39 165.6 95 89.5
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 3.8e-38 162.9 207 45.9
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 1.4e-35 154.5 96 84.4
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.4e-35 154.5 239 45.6
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 4.0e-35 152.9 122 69.7
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 8.8e-35 151.8 126 64.3
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 8.8e-35 151.8 126 64.3
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 1.1e-32 144.8 192 44.8
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 2.4e-32 143.7 93 81.7
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 5.5e-29 132.5 142 52.8
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 3.0e-27 126.7 80 77.5
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.6e-23 114.4 99 65.7
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 3.5e-23 113.2 231 37.7
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.3e-19 100.5 62 83.9
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.3e-17 94.7 104 55.8
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 3.1e-11 73.6 40 77.5
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 2.4e-08 63.9 130 36.9
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 4.1e-08 63.2 42 64.3
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 1.3e-06 58.2 43 62.8
Duzib248G0175 Durio zibethinus HOM05D002972 ORTHO05D002272 2.3e-06 57.4 47 51.1
Eucgr.I01431 Eucalyptus grandis HOM05D002972 ORTHO05D002272 2.3e-06 57.4 42 50.0
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 2.3e-06 57.4 101 38.6
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 3.9e-06 56.6 57 61.4
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 8.6e-06 55.5 62 53.2


User provided reference genes

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