Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 0.0e+00 1884.4 951 100.0
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 0.0e+00 1132.5 956 62.7
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 6.5e-312 1073.9 955 59.1
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 1.2e-308 1063.1 970 58.2
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 2.3e-307 1058.9 958 58.2
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 9.6e-306 1053.5 951 58.5
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 2.1e-305 1052.4 954 58.8
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 1.4e-304 1049.7 961 57.1
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 9.0e-304 1047.0 941 58.7
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 1.7e-302 1042.7 950 58.0
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 8.4e-302 1040.4 941 58.1
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 7.1e-301 1037.3 949 57.7
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 2.7e-300 1035.4 953 58.3
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 4.6e-300 1034.6 963 57.0
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 2.3e-299 1032.3 972 56.0
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 3.0e-299 1031.9 953 58.2
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 1.9e-298 1029.2 951 57.2
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 4.3e-298 1028.1 950 58.8
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 1.1e-296 1023.5 961 56.8
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 4.9e-294 1014.6 958 57.6
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 3.2e-293 1011.9 957 56.7
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 3.2e-293 1011.9 945 56.8
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 5.5e-293 1011.1 964 56.1
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 5.5e-293 1011.1 948 56.8
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 5.5e-293 1011.1 933 57.2
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 7.1e-293 1010.7 978 55.5
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 2.1e-292 1009.2 964 56.7
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 3.5e-292 1008.4 934 57.9
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 3.9e-291 1005.0 936 56.6
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.1e-290 1003.4 995 54.3
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.1e-290 1003.4 962 55.3
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.5e-290 1003.0 977 55.2
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 9.6e-290 1000.3 984 55.1
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 1.2e-287 993.4 947 56.5
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 5.9e-287 991.1 954 55.9
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 1.4e-285 986.5 963 55.6
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 9.3e-285 983.8 940 56.5
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 1.6e-281 973.0 947 55.9
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 4.2e-277 958.4 962 53.6
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 1.2e-276 956.8 965 54.7
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.0e-275 953.7 1041 51.7
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 3.9e-275 951.8 949 53.5
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 5.1e-275 951.4 962 54.2
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 2.0e-274 949.5 949 53.7
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 2.0e-274 949.5 951 54.4
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 8.2e-273 944.1 943 54.4
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 4.1e-272 941.8 945 54.1
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 2.6e-271 939.1 954 53.5
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 2.1e-268 929.5 824 59.3
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 2.7e-268 929.1 955 52.9
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 3.6e-268 928.7 957 52.9
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 4.7e-268 928.3 954 53.0
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 6.1e-268 927.9 945 53.5
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 2.3e-267 926.0 958 52.6
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 2.6e-266 922.5 953 54.4
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 3.3e-266 922.2 873 57.7
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 8.2e-265 917.5 934 53.5
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 1.3e-262 910.2 947 53.2
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 6.5e-262 907.9 954 52.0
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 6.5e-262 907.9 955 53.0
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 3.2e-261 905.6 950 52.4
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 2.7e-260 902.5 972 51.7
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 4.0e-259 898.7 953 50.7
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 8.8e-259 897.5 953 52.2
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 7.5e-258 894.4 940 53.2
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 6.3e-257 891.3 956 51.5
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 9.1e-256 887.5 953 52.4
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 1.1e-253 880.6 942 52.8
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 1.0e-251 874.0 979 49.7
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 2.2e-241 839.7 958 48.3
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.5e-237 827.0 824 53.8
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 2.6e-234 816.2 944 49.0
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 4.6e-231 805.4 809 56.2
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 3.9e-230 802.4 961 47.5
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 3.9e-230 802.4 882 50.9
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 2.5e-229 799.7 980 46.4
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 1.6e-228 797.0 954 47.5
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 6.2e-228 795.0 976 46.9
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 1.5e-226 790.4 939 47.2
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 5.8e-226 788.5 804 54.1
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 7.0e-224 781.6 955 46.4
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 3.9e-222 775.8 967 46.4
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 5.0e-222 775.4 974 46.4
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 1.4e-219 767.3 983 44.8
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 1.2e-215 754.2 944 45.6
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 2.1e-212 743.4 955 44.3
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 2.3e-206 723.4 984 43.5
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 5.1e-206 722.2 967 43.8
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 7.6e-202 708.4 973 43.8
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 2.2e-201 706.8 975 43.4
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 5.4e-200 702.2 976 43.3
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 9.3e-200 701.4 981 43.6
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 7.8e-199 698.4 729 52.7
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.1e-197 694.5 569 64.9
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 1.9e-197 693.7 891 44.9
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.5e-197 693.3 569 64.7
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 1.6e-196 690.6 892 44.8
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.5e-189 666.8 855 45.8
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 7.1e-184 648.7 641 54.6
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 1.6e-180 637.5 1040 39.3
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 1.6e-180 637.5 720 47.9
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 1.8e-179 634.0 873 45.2
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 1.9e-168 597.4 863 40.3
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 5.7e-165 585.9 910 40.8
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 1.8e-163 580.9 669 48.6
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.3e-156 558.1 781 43.1
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 6.5e-153 545.8 824 40.8
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 7.4e-149 532.3 942 38.2
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 6.5e-145 519.2 779 40.6
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 2.7e-143 513.8 658 43.8
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 8.8e-142 508.8 661 43.3
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 4.5e-138 496.5 480 57.3
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 7.2e-136 489.2 666 44.0
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 9.4e-136 488.8 666 44.0
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 4.7e-135 486.5 1042 33.8
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 8.6e-129 465.7 699 39.8
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 8.0e-127 459.1 852 34.9
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 5.2e-126 456.4 704 39.6
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 2.2e-124 451.1 941 32.2
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 8.6e-121 439.1 828 36.6
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.3e-116 422.5 597 42.7
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 1.6e-111 408.3 351 60.7
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.1e-110 404.1 531 44.8
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 4.4e-101 373.6 260 72.3
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 1.0e-97 362.5 602 38.2
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 1.2e-95 355.5 596 37.9
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 2.8e-95 354.4 266 68.4
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.9e-80 305.1 348 50.3
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.8e-78 298.5 566 35.0
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 2.1e-71 275.0 556 35.1
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 6.9e-70 270.0 346 42.2
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 4.5e-69 267.3 352 42.3
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 2.7e-58 231.5 146 74.7
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 1.5e-56 225.7 1022 24.6
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 4.3e-56 224.2 263 44.9
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.4e-56 223.4 213 52.6
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 2.2e-52 211.8 276 44.6
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 2.0e-48 198.7 200 50.0
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 1.9e-43 182.2 143 63.6
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 3.0e-41 174.9 159 54.7
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 8.8e-41 173.3 301 35.9
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 1.5e-40 172.6 230 40.0
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 2.6e-32 145.2 119 56.3
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 2.8e-31 141.7 142 53.5
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 2.5e-27 128.6 429 28.0
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 7.2e-27 127.1 104 63.5
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 4.7e-26 124.4 212 36.3
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 7.5e-24 117.1 150 44.7
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 3.1e-22 111.7 84 69.0
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 1.3e-20 106.3 105 51.4
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 2.9e-20 105.1 229 29.7
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 2.5e-19 102.1 90 60.0
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 1.2e-18 99.8 130 42.3
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 5.2e-17 94.4 284 27.1
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 8.8e-17 93.6 62 71.0
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 1.5e-16 92.8 155 35.5
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 2.8e-15 88.6 155 34.2
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 2.7e-13 82.0 104 40.4
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 1.3e-12 79.7 71 50.7
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 3.8e-12 78.2 228 27.6
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 2.3e-09 68.9 132 30.3
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 2.3e-09 68.9 104 36.5
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 8.9e-09 67.0 87 40.2
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 8.9e-09 67.0 87 40.2
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 1.2e-08 66.6 86 40.7
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 1.2e-08 66.6 106 34.0
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 2.6e-08 65.5 87 39.1


User provided reference genes

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