Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 1.8e-105 386.0 198 100.0
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 4.4e-88 328.2 195 85.6
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 3.8e-87 325.1 193 85.0
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 4.9e-87 324.7 197 80.2
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 4.9e-87 324.7 197 80.2
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 3.2e-86 322.0 196 82.7
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 1.2e-85 320.1 195 81.5
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 2.1e-85 319.3 194 82.5
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 3.5e-85 318.5 192 82.8
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 3.5e-85 318.5 195 81.5
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 7.8e-85 317.4 192 83.9
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 7.8e-85 317.4 196 81.6
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 7.8e-85 317.4 196 82.1
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 7.8e-85 317.4 191 84.3
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 1.7e-84 316.2 195 81.0
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 1.7e-84 316.2 196 82.7
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 5.1e-84 314.7 193 82.4
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.1e-83 313.5 195 81.5
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 1.9e-83 312.8 198 78.3
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 3.3e-83 312.0 192 82.8
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 4.3e-83 311.6 198 77.3
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 5.6e-83 311.2 201 77.6
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 7.3e-83 310.8 195 79.5
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 7.3e-83 310.8 199 79.4
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 7.3e-83 310.8 194 80.4
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 7.3e-83 310.8 196 80.1
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 9.6e-83 310.5 198 78.8
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 2.1e-82 309.3 198 77.3
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 4.8e-82 308.1 198 76.8
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 6.2e-82 307.8 199 78.4
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 6.2e-82 307.8 198 78.8
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 1.1e-81 307.0 196 80.6
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 1.4e-81 306.6 194 78.9
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 1.8e-81 306.2 201 76.1
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 5.3e-81 304.7 198 79.3
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 5.3e-81 304.7 191 79.1
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 6.9e-81 304.3 194 78.4
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 6.9e-81 304.3 196 77.6
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 9.0e-81 303.9 198 78.3
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 1.2e-80 303.5 199 78.4
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 1.2e-80 303.5 189 80.4
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 1.5e-80 303.1 195 78.5
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 2.0e-80 302.8 194 78.9
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 5.8e-80 301.2 192 79.7
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 7.6e-80 300.8 196 78.1
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 7.6e-80 300.8 191 78.5
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 7.6e-80 300.8 189 80.4
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 2.9e-79 298.9 198 77.8
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 3.8e-79 298.5 196 77.6
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 6.4e-79 297.7 191 76.4
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 8.4e-79 297.4 187 78.6
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 8.4e-79 297.4 187 78.6
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 1.1e-78 297.0 196 76.5
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 1.1e-78 297.0 195 78.5
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.9e-78 296.2 187 78.1
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 3.2e-78 295.4 198 74.2
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 5.4e-78 294.7 191 77.5
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 7.1e-78 294.3 219 72.6
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 1.2e-77 293.5 197 75.6
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 2.1e-77 292.7 200 76.0
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 2.7e-77 292.4 192 73.4
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 2.7e-77 292.4 194 77.3
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 3.5e-77 292.0 189 77.2
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 3.5e-77 292.0 189 77.2
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 3.5e-77 292.0 183 80.3
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 4.6e-77 291.6 186 80.1
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 6.0e-77 291.2 191 78.0
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 3.0e-76 288.9 188 76.6
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 3.0e-76 288.9 188 77.1
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 3.9e-76 288.5 190 78.9
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 3.9e-76 288.5 188 77.1
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 5.1e-76 288.1 189 77.2
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 5.1e-76 288.1 189 76.2
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 8.7e-76 287.3 194 75.3
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 1.5e-75 286.6 190 77.4
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 4.3e-75 285.0 197 71.6
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 5.6e-75 284.6 209 72.2
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 2.8e-74 282.3 199 76.9
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 2.8e-74 282.3 178 77.5
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 1.1e-73 280.4 195 74.4
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 1.4e-73 280.0 188 75.5
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 1.4e-73 280.0 189 75.1
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 1.8e-73 279.6 245 61.6
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 1.8e-73 279.6 245 61.6
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 5.8e-72 274.6 188 75.5
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 1.3e-71 273.5 199 75.4
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 1.0e-68 263.8 163 82.2
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 1.5e-67 260.0 185 71.9
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 2.5e-67 259.2 168 80.4
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 5.3e-65 251.5 188 68.6
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 2.6e-64 249.2 195 68.7
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 7.6e-64 247.7 171 71.9
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 1.7e-63 246.5 188 67.6
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 8.4e-63 244.2 196 68.4
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 7.9e-61 237.7 149 79.9
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 4.1e-57 225.3 185 62.7
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 1.0e-55 220.7 143 80.4
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.3e-55 220.3 187 65.2
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 5.7e-51 204.9 126 84.1
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 2.2e-50 203.0 251 52.2
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 2.4e-49 199.5 138 72.5
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 5.0e-47 191.8 109 87.2
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 1.4e-46 190.3 109 86.2
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 4.2e-46 188.7 113 84.1
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 5.5e-46 188.3 138 71.0
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 7.9e-45 184.5 145 65.5
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 2.6e-40 169.5 187 49.7
Dinv18279 Davidia involucrata HOM05D000780 ORTHO05D008187 3.8e-39 165.6 117 71.8
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 5.0e-39 165.2 199 48.7
ClCG03G011510 Citrullus lanatus HOM05D000780 ORTHO05D008187 2.7e-37 159.5 111 72.1
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 6.7e-36 154.8 85 88.2
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 4.8e-34 148.7 102 72.5
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 4.1e-33 145.6 142 56.3
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 4.2e-30 135.6 139 54.7
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 4.8e-26 122.1 140 54.3
SalBow1G3250 Salvia bowleyana HOM05D000780 ORTHO05D008187 5.9e-24 115.2 83 67.5
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 1.9e-22 110.2 132 47.7
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 7.2e-22 108.2 62 85.5
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 1.2e-21 107.5 197 35.0
SalBow1G5540 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.8e-20 103.6 83 63.9
SalBow1G6941 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.8e-12 77.0 56 64.3
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 1.5e-11 73.9 109 43.1
Psat7g095160 Pisum sativum HOM05D000780 ORTHO05D008187 1.1e-09 67.8 56 58.9
Cpa.g.c42374 Carica papaya HOM05D000780 ORTHO05D008187 1.8e-09 67.0 50 64.0


User provided reference genes

Program Settings