Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 1.1e-163 580.1 326 100.0
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 2.9e-121 439.1 329 79.3
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 1.9e-120 436.4 324 77.8
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 5.5e-120 434.9 325 78.5
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 1.2e-119 433.7 329 79.3
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 2.8e-119 432.6 324 76.9
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 3.6e-119 432.2 329 78.4
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 4.7e-119 431.8 325 77.8
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.5e-117 426.8 326 78.8
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.5e-117 426.8 329 75.7
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 2.0e-117 426.4 329 77.8
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 2.0e-117 426.4 326 78.2
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 3.4e-117 425.6 329 75.7
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 3.4e-117 425.6 325 77.8
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 1.7e-116 423.3 335 75.5
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 2.8e-116 422.5 324 78.1
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 2.8e-116 422.5 330 75.5
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 3.7e-116 422.2 324 76.9
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 3.7e-116 422.2 324 77.5
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.9e-116 421.8 326 77.0
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 4.9e-116 421.8 329 76.9
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 8.3e-116 421.0 326 76.7
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 1.1e-115 420.6 325 78.5
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 1.1e-115 420.6 325 76.9
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 1.4e-115 420.2 328 77.4
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 1.8e-115 419.9 327 75.5
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 1.8e-115 419.9 325 77.2
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 2.4e-115 419.5 325 76.3
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 3.1e-115 419.1 329 76.0
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 4.1e-115 418.7 328 74.4
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 7.0e-115 417.9 325 76.0
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 7.0e-115 417.9 325 78.2
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 1.6e-114 416.8 325 78.2
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 1.6e-114 416.8 324 76.9
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 2.0e-114 416.4 325 76.9
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 2.7e-114 416.0 325 77.2
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 2.7e-114 416.0 331 74.3
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 2.7e-114 416.0 330 76.4
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 2.7e-114 416.0 324 75.0
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 7.8e-114 414.5 325 76.9
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 7.8e-114 414.5 325 76.0
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 1.0e-113 414.1 331 77.3
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 1.3e-113 413.7 325 76.0
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 1.7e-113 413.3 329 75.1
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 1.7e-113 413.3 327 75.8
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 2.3e-113 412.9 324 75.9
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 2.9e-113 412.5 326 76.4
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 2.9e-113 412.5 325 76.3
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 3.8e-113 412.1 325 76.0
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 3.8e-113 412.1 329 76.0
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 8.6e-113 411.0 325 76.6
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 4.3e-112 408.7 329 74.2
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 5.6e-112 408.3 326 75.8
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 9.5e-112 407.5 326 74.2
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 1.2e-111 407.1 274 84.7
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 3.6e-111 405.6 324 75.9
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 4.7e-111 405.2 324 74.4
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 8.0e-111 404.4 327 75.8
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 1.8e-110 403.3 324 74.4
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 2.3e-110 402.9 325 76.3
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 4.0e-110 402.1 325 74.8
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 6.8e-110 401.4 328 72.9
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 1.5e-109 400.2 324 73.5
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 1.5e-109 400.2 330 74.8
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.5e-109 400.2 324 75.3
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 3.4e-109 399.1 331 75.5
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 3.4e-109 399.1 332 73.2
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 3.4e-109 399.1 326 72.7
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 4.4e-109 398.7 324 75.0
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 5.7e-109 398.3 324 73.1
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 5.7e-109 398.3 324 74.4
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 5.7e-109 398.3 324 73.1
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 5.7e-109 398.3 324 74.4
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 5.7e-109 398.3 327 74.9
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 5.7e-109 398.3 360 69.7
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 9.8e-109 397.5 324 72.2
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 1.3e-108 397.1 332 72.0
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 1.3e-108 397.1 327 75.2
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 1.3e-108 397.1 326 73.9
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.7e-108 396.7 324 74.7
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 1.7e-108 396.7 326 73.0
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 4.9e-108 395.2 329 72.9
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 6.4e-108 394.8 330 72.1
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 6.4e-108 394.8 310 71.0
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 8.3e-108 394.4 321 74.8
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 1.1e-107 394.0 325 73.5
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 1.4e-107 393.7 326 73.3
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 2.4e-107 392.9 327 72.8
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 2.4e-107 392.9 326 71.8
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 4.1e-107 392.1 253 90.5
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 7.0e-107 391.3 324 72.8
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 7.0e-107 391.3 324 72.2
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 9.2e-107 391.0 335 71.9
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 1.2e-106 390.6 325 71.7
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 2.0e-106 389.8 381 66.7
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 4.6e-106 388.7 302 77.5
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 4.6e-106 388.7 339 71.4
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 6.0e-106 388.3 328 75.6
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 6.0e-106 388.3 325 73.5
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 6.0e-106 388.3 330 70.6
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 3.0e-105 386.0 330 73.3
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 3.9e-105 385.6 331 68.9
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 5.0e-105 385.2 329 74.5
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 5.0e-105 385.2 326 72.1
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 5.0e-105 385.2 332 73.2
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 6.6e-105 384.8 303 76.9
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 8.6e-105 384.4 330 73.0
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.1e-104 384.0 323 73.4
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.1e-104 384.0 330 73.6
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.5e-104 383.6 327 71.3
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.5e-104 383.6 303 78.2
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 2.5e-104 382.9 326 71.8
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 2.5e-104 382.9 326 71.8
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.5e-104 382.9 272 81.2
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 2.5e-104 382.9 327 71.3
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 3.3e-104 382.5 320 73.8
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 7.3e-104 381.3 330 70.0
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 9.5e-104 380.9 324 71.9
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 1.6e-103 380.2 325 71.1
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 1.6e-103 380.2 325 71.1
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 6.2e-103 378.3 332 71.1
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 1.1e-102 377.5 320 70.9
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.1e-102 377.5 330 71.8
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 1.4e-102 377.1 324 70.4
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 1.8e-102 376.7 323 72.1
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 3.1e-102 375.9 324 71.0
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 5.2e-102 375.2 330 69.4
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 5.2e-102 375.2 324 69.4
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 5.2e-102 375.2 310 73.5
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 5.2e-102 375.2 255 76.1
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 8.9e-102 374.4 324 69.8
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 8.9e-102 374.4 256 85.5
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 7.5e-101 371.3 270 78.9
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 5.4e-99 365.2 305 72.1
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 1.2e-98 364.0 267 77.5
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 3.9e-97 359.0 324 69.4
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 4.7e-95 352.1 333 66.1
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.1e-94 350.9 227 90.7
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 1.4e-94 350.5 305 70.8
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 1.2e-93 347.4 262 76.0
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.4e-93 345.9 324 60.5
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.3e-92 344.0 226 88.9
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 8.3e-92 341.3 273 73.3
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 1.1e-88 330.9 309 69.3
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.9e-88 330.1 226 84.1
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 1.9e-88 330.1 274 70.1
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 9.5e-88 327.8 359 62.1
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 1.3e-84 317.4 331 66.5
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 2.4e-83 313.2 266 65.4
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 1.7e-81 307.0 252 63.5
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 1.2e-79 300.8 271 64.6
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 2.1e-79 300.1 324 59.9
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 2.1e-79 300.1 324 59.9
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 1.4e-78 297.4 258 76.0
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 5.2e-78 295.4 290 60.0
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 8.4e-76 288.1 250 58.4
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 2.4e-75 286.6 246 76.0
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 1.7e-73 280.4 268 69.0
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 3.9e-73 279.3 237 76.4
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 1.6e-71 273.9 196 82.1
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 1.9e-56 223.8 268 47.0
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 1.3e-55 221.1 275 49.8
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 5.8e-53 212.2 145 73.8
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 7.4e-48 195.3 197 70.1
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 7.4e-48 195.3 120 79.2
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 4.8e-47 192.6 144 70.8
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 6.9e-46 188.7 120 77.5
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.7e-42 176.8 165 73.3
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 4.1e-38 162.9 121 73.6
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 2.2e-36 157.1 120 70.8
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 5.7e-32 142.5 257 40.9
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 1.7e-31 141.0 115 63.5
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 2.2e-31 140.6 88 77.3
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 4.1e-30 136.3 108 75.0
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 3.0e-25 120.2 76 80.3
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 1.8e-17 94.4 107 65.4
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 2.3e-17 94.0 163 51.5
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.2e-16 91.7 83 81.9
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 4.8e-15 86.3 164 50.6
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 8.2e-15 85.5 122 46.7
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 1.2e-08 65.1 88 40.9
CAN.G835.4 Capsicum annuum HOM05D000091 ORTHO05D003679 5.4e-06 56.2 36 83.3
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 9.1e-06 55.5 69 37.7


User provided reference genes

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