Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1830.8 954 100.0
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1371.7 967 75.0
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1371.3 963 75.6
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1369.8 980 74.7
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1364.7 967 74.6
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1363.6 962 75.4
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1363.6 967 74.7
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1360.9 963 75.5
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1353.2 972 73.5
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1352.8 972 73.7
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1344.3 979 72.8
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1339.3 990 72.3
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1318.5 983 72.6
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1313.9 1006 69.9
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1305.4 968 72.4
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1299.6 966 72.0
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1291.9 962 71.9
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1286.2 981 69.7
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1276.2 1160 62.1
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1274.6 964 71.3
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1271.9 984 70.2
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1263.4 988 69.0
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1260.7 994 68.9
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1260.4 989 68.0
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1257.7 971 69.3
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1249.6 989 68.6
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1248.4 1042 65.4
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1246.9 989 68.5
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1242.6 993 68.2
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1237.6 992 68.2
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1236.9 1015 66.8
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1236.5 1002 68.5
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1236.1 1034 65.3
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1233.8 968 69.6
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1233.8 968 69.6
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1232.2 1033 65.0
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1230.3 1025 65.4
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1229.9 957 69.0
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1229.5 1037 66.2
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1229.5 987 67.1
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1226.8 992 67.8
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1225.3 978 67.3
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1225.3 992 67.7
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1224.9 993 67.3
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1224.5 1028 64.6
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1224.2 979 67.4
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1219.5 972 68.0
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1218.4 963 67.6
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1218.4 963 67.6
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1218.0 989 66.5
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1218.0 984 67.6
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1217.2 963 67.6
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1214.1 959 67.3
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1214.1 964 67.2
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1212.2 975 67.6
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1210.7 1040 65.1
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1209.9 973 67.1
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1209.1 965 67.9
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1208.7 963 66.8
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1208.7 1021 64.3
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1208.7 969 66.8
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1208.4 961 68.1
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1206.0 970 67.0
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1204.5 980 67.2
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1202.6 963 67.9
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1199.9 1045 64.2
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1198.0 966 67.7
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1198.0 1041 64.6
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1196.0 966 67.5
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1194.1 1065 62.8
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1193.7 986 65.9
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1192.2 974 66.3
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1190.3 966 67.4
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1189.5 966 66.8
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1186.4 963 67.1
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1186.0 1036 64.4
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1185.2 969 66.4
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 0.0e+00 1152.9 844 73.3
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1148.7 976 64.3
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1141.7 828 73.8
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 0.0e+00 1130.2 970 65.6
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1130.2 989 62.2
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 0.0e+00 1105.5 986 62.8
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 0.0e+00 1102.8 987 59.7
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 0.0e+00 1100.1 1003 59.9
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 0.0e+00 1087.0 957 65.0
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1078.5 905 65.5
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 6.5e-312 1074.3 1000 60.0
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 2.0e-303 1045.8 826 69.5
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 1.6e-292 1009.6 882 64.5
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.1e-272 943.7 1007 53.0
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 1.7e-265 919.8 1070 49.5
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 2.5e-261 906.0 1057 49.3
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 5.2e-259 898.3 979 51.8
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 4.5e-255 885.2 989 53.2
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 2.4e-248 862.8 756 63.5
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.5e-245 853.6 700 66.9
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 2.3e-214 750.0 789 55.9
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 9.6e-213 744.6 924 49.4
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 9.6e-205 718.0 593 66.1
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 3.6e-204 716.1 595 65.0
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 5.1e-182 642.5 548 66.6
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 2.0e-178 630.6 631 58.2
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 9.4e-160 568.5 555 57.8
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 6.7e-158 562.4 964 35.7
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 1.8e-134 484.6 390 63.6
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 1.9e-128 464.5 358 64.5
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 5.4e-123 446.4 274 80.3
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 1.6e-122 444.9 270 82.2
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 2.7e-122 444.1 960 32.9
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.3e-120 437.2 305 70.8
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 1.8e-118 431.4 277 80.9
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 3.1e-118 430.6 370 59.7
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 7.8e-114 416.0 291 72.5
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 1.6e-111 408.3 1306 28.3
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 3.1e-110 404.1 361 61.5
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 2.5e-104 384.4 950 32.0
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 1.6e-98 365.2 827 32.8
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.4e-85 320.9 287 58.2
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 1.6e-79 302.0 175 84.0
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 3.8e-76 290.8 222 69.8
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.3e-73 281.6 247 60.7
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 8.7e-73 279.6 204 68.6
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 8.4e-68 263.1 145 89.7
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 5.0e-60 237.3 181 69.1
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.0e-57 228.0 144 75.7
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.7e-55 221.1 203 60.1
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 5.0e-52 210.7 150 74.0
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.1e-50 203.8 129 75.2
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 1.5e-48 199.1 104 95.2
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.0e-48 198.7 129 73.6
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 9.7e-48 196.4 243 49.8
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 3.1e-46 191.4 214 54.7
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 1.1e-43 183.0 161 61.5
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 1.4e-41 176.0 98 87.8
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.4e-40 171.0 131 67.2
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 4.1e-38 164.5 122 70.5
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 8.5e-36 156.8 109 70.6
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 1.7e-28 132.5 202 44.6
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 6.1e-26 124.0 85 67.1
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 8.8e-25 120.2 85 67.1
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 5.7e-24 117.5 165 41.2
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 4.1e-22 111.3 139 48.9
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 3.7e-15 88.2 42 97.6
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 7.5e-08 63.9 45 71.1
AagrBONN_evm.TU.Sc2ySwM_362.221 Anthoceros agrestis HOM05D001887 ORTHO05D070959 2.4e-06 58.9 60 53.3


User provided reference genes

Program Settings