Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 2.5e-200 701.8 338 100.0
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 6.9e-166 587.4 335 82.1
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 2.9e-164 582.0 339 81.4
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 1.1e-163 580.1 338 81.7
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 4.2e-163 578.2 335 81.2
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 5.5e-163 577.8 334 81.1
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 9.4e-163 577.0 338 80.2
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 9.4e-163 577.0 342 79.2
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 7.9e-162 573.9 335 80.6
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 1.0e-161 573.5 338 80.5
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.8e-161 572.8 337 79.5
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 5.1e-161 571.2 334 79.6
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.0e-160 569.3 320 82.5
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 2.6e-160 568.9 334 79.0
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.8e-159 565.5 341 78.9
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 3.7e-159 565.1 332 80.1
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 4.8e-159 564.7 335 80.0
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 1.2e-157 560.1 332 78.6
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 2.6e-157 558.9 334 78.4
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 5.9e-157 557.8 342 76.9
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.3e-156 556.6 332 78.0
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 1.3e-156 556.6 335 78.2
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 2.2e-156 555.8 337 77.4
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 5.0e-156 554.7 337 76.6
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 5.0e-156 554.7 332 77.4
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 8.5e-156 553.9 331 77.3
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 1.4e-155 553.1 327 78.0
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.5e-155 552.4 343 76.4
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.2e-155 552.0 332 76.8
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.2e-154 550.1 331 76.7
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 1.2e-154 550.1 337 77.2
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 1.6e-154 549.7 335 77.3
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 4.7e-154 548.1 340 78.2
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 4.7e-154 548.1 334 77.8
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 6.1e-154 547.7 331 77.0
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 7.9e-154 547.4 334 77.2
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 1.0e-153 547.0 333 75.4
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.0e-153 547.0 310 81.6
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 1.4e-153 546.6 334 76.3
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 1.8e-153 546.2 352 74.1
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 3.0e-153 545.4 333 76.3
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 3.9e-153 545.0 339 76.7
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.9e-153 545.0 339 76.4
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 5.2e-153 544.7 333 74.8
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 5.2e-153 544.7 337 76.9
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 8.8e-153 543.9 344 77.9
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 8.8e-153 543.9 339 77.6
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.5e-152 543.1 333 76.6
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 2.6e-152 542.3 331 76.7
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 2.6e-152 542.3 326 79.4
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 9.7e-152 540.4 339 76.7
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 1.3e-151 540.0 333 75.7
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.3e-151 540.0 327 77.7
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 1.7e-151 539.7 327 77.7
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 2.2e-151 539.3 333 75.7
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 2.2e-151 539.3 330 78.2
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 2.8e-151 538.9 331 77.0
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 4.8e-151 538.1 330 74.5
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 4.8e-151 538.1 333 74.8
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 6.3e-151 537.7 331 77.3
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 1.4e-150 536.6 333 75.1
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.8e-150 536.2 339 75.8
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 1.8e-150 536.2 331 77.3
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 1.8e-150 536.2 330 74.8
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 2.4e-150 535.8 341 74.5
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 5.3e-150 534.6 325 76.6
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 7.0e-150 534.3 333 76.9
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 7.0e-150 534.3 325 76.3
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 9.1e-150 533.9 334 74.9
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 1.2e-149 533.5 338 73.7
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 1.6e-149 533.1 337 73.0
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 2.0e-149 532.7 331 74.3
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 2.0e-149 532.7 331 74.3
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 2.6e-149 532.3 331 74.3
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 3.5e-149 531.9 330 73.9
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 4.5e-149 531.6 330 76.1
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 7.7e-149 530.8 332 75.3
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 2.2e-148 529.3 331 74.0
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 2.2e-148 529.3 331 74.0
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 4.2e-147 525.0 331 73.1
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.2e-146 523.5 332 74.1
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 1.6e-146 523.1 311 77.5
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.7e-146 522.3 334 74.0
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.0e-145 520.4 334 74.0
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 1.8e-145 519.6 333 75.4
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 9.1e-142 507.3 332 71.7
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 1.2e-141 506.9 317 72.9
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.2e-141 506.9 378 65.3
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 1.7e-140 503.1 332 73.5
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 1.7e-140 503.1 308 74.7
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 4.2e-139 498.4 332 73.2
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 7.2e-139 497.7 313 76.4
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 1.4e-137 493.4 299 76.6
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.4e-137 493.4 331 70.4
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 8.8e-137 490.7 315 72.4
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 3.4e-136 488.8 335 71.0
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 4.4e-136 488.4 334 70.1
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 2.8e-135 485.7 310 75.5
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 2.8e-135 485.7 335 67.2
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 3.7e-135 485.3 293 76.5
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 3.7e-135 485.3 311 74.3
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 8.3e-135 484.2 357 66.9
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 1.4e-134 483.4 334 68.6
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 4.1e-134 481.9 344 70.1
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 1.7e-132 476.5 330 67.9
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 2.9e-132 475.7 353 64.9
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 9.5e-131 470.7 311 71.7
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 6.1e-130 468.0 335 64.8
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 1.4e-129 466.8 266 81.6
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 1.8e-129 466.5 332 67.2
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 2.2e-127 459.5 334 68.0
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 9.2e-126 454.1 306 67.6
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 5.9e-125 451.4 314 68.2
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 2.3e-124 449.5 263 79.5
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 1.5e-123 446.8 289 72.7
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 3.6e-122 442.2 306 67.3
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.8e-121 439.9 303 66.7
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 1.8e-121 439.9 308 65.9
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.8e-121 439.9 283 71.7
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 2.0e-120 436.4 247 82.2
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 3.1e-113 412.5 312 62.5
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 3.4e-112 409.1 307 62.2
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 2.4e-110 402.9 287 67.2
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 1.9e-107 393.3 313 59.7
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.7e-103 380.2 400 51.0
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 1.1e-97 360.9 222 73.4
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 9.9e-96 354.4 306 60.5
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 7.3e-91 338.2 244 65.2
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.6e-90 337.0 256 62.9
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 6.2e-90 335.1 226 66.4
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 3.0e-84 316.2 227 65.2
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 3.9e-84 315.8 313 51.8
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 2.6e-80 303.1 268 58.6
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.1e-73 281.2 291 50.2
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 9.9e-72 274.6 169 75.1
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 2.4e-70 270.0 170 75.3
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 2.9e-63 246.5 143 79.7
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 3.1e-57 226.5 182 61.5
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 2.0e-56 223.8 130 76.2
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 3.4e-48 196.4 126 73.8
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 3.0e-36 156.8 95 76.8
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 5.0e-31 139.4 173 49.1
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 1.6e-24 117.9 64 82.8
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 4.5e-24 116.3 75 62.7
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 5.0e-23 112.8 66 77.3
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 7.2e-22 109.0 78 62.8
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 3.0e-20 103.6 72 66.7
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 2.4e-17 94.0 75 64.0
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 9.1e-17 92.0 55 76.4
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 1.7e-15 87.8 76 56.6
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 2.3e-12 77.4 215 27.9
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.7e-10 71.2 41 70.7
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 1.4e-09 68.2 196 29.1
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 5.4e-09 66.2 78 51.3
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 1.2e-08 65.1 166 29.5
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 3.5e-08 63.5 99 34.3
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 2.9e-07 60.5 151 32.5
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 1.5e-06 58.2 213 27.2
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.5e-06 58.2 155 28.4
MELO3C008822.2 Cucumis melo HOM05D002024 ORTHO05D004352 2.5e-06 57.4 153 29.4
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 2.5e-06 57.4 153 30.1
Lsat_1_v5_gn_6_31721 Lactuca sativa HOM05D002024 ORTHO05D004352 2.5e-06 57.4 156 26.3
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 3.3e-06 57.0 153 30.1
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 3.3e-06 57.0 153 30.1
PGR042G1807 Punica granatum HOM05D002024 ORTHO05D004352 3.3e-06 57.0 159 30.8
Medtr7g086370 Medicago truncatula HOM05D002024 ORTHO05D004352 4.3e-06 56.6 156 28.2
CsaV3_4G012120 Cucumis sativus L. HOM05D002024 ORTHO05D004352 5.6e-06 56.2 153 28.8
Psat3g086680 Pisum sativum HOM05D002024 ORTHO05D004352 5.6e-06 56.2 157 28.0
AT1G54440 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 9.5e-06 55.5 152 29.6
Hma1.2p1_0106F.1_g051130 Hydrangea macrophylla HOM05D002024 ORTHO05D004352 9.5e-06 55.5 157 29.9


User provided reference genes

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