Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 9.3e-113 410.2 208 100.0
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 4.7e-96 354.8 204 85.3
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 1.7e-93 346.3 204 83.3
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 3.7e-93 345.1 204 83.3
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 4.8e-93 344.7 204 81.9
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 3.4e-91 338.6 204 80.9
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 5.9e-91 337.8 204 80.4
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 5.9e-91 337.8 204 81.4
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 2.2e-90 335.9 204 80.4
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 8.5e-90 334.0 202 81.2
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 1.1e-89 333.6 204 78.4
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.4e-89 333.2 200 81.5
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.9e-89 332.8 204 78.4
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.9e-89 332.8 204 78.4
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 3.2e-89 332.0 204 79.9
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 2.7e-88 328.9 204 75.5
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 3.6e-88 328.6 204 76.5
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 6.1e-88 327.8 199 80.9
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 8.0e-88 327.4 204 77.0
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 8.0e-88 327.4 204 77.0
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 8.0e-88 327.4 204 77.5
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 8.0e-88 327.4 204 78.4
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.4e-87 326.6 204 77.0
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 1.8e-87 326.2 204 77.9
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.8e-87 326.2 204 77.9
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 1.8e-87 326.2 204 77.0
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 3.0e-87 325.5 204 76.5
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 3.0e-87 325.5 204 77.0
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 3.9e-87 325.1 204 76.0
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 3.9e-87 325.1 204 77.0
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 5.2e-87 324.7 204 74.5
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 5.2e-87 324.7 204 77.9
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 8.8e-87 323.9 204 75.5
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 8.8e-87 323.9 204 75.0
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.1e-86 323.6 204 77.0
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 1.5e-86 323.2 204 74.0
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 1.5e-86 323.2 204 75.5
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.0e-86 322.8 204 76.5
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 3.3e-86 322.0 204 74.5
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 3.3e-86 322.0 204 74.5
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 4.4e-86 321.6 204 74.5
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 4.4e-86 321.6 204 74.5
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 4.4e-86 321.6 204 77.5
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 4.4e-86 321.6 204 77.5
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 4.4e-86 321.6 204 76.5
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 4.4e-86 321.6 200 78.5
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 7.4e-86 320.9 204 73.5
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 7.4e-86 320.9 204 74.0
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 1.3e-85 320.1 204 72.5
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 1.3e-85 320.1 204 74.0
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 1.3e-85 320.1 204 75.5
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 2.2e-85 319.3 204 73.5
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 2.2e-85 319.3 204 73.5
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 2.2e-85 319.3 204 73.0
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 2.2e-85 319.3 204 74.0
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 2.2e-85 319.3 204 75.0
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 2.2e-85 319.3 204 75.5
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 2.2e-85 319.3 204 75.0
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.8e-85 318.9 204 75.0
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 3.7e-85 318.5 204 76.0
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 3.7e-85 318.5 256 66.0
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 4.8e-85 318.2 204 73.0
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 8.2e-85 317.4 204 76.0
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 1.1e-84 317.0 204 73.5
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 1.1e-84 317.0 203 72.9
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 1.8e-84 316.2 204 74.5
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 1.8e-84 316.2 204 75.0
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 1.8e-84 316.2 204 75.0
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 4.1e-84 315.1 201 76.1
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.1e-84 315.1 204 73.5
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 4.1e-84 315.1 204 75.0
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 7.0e-84 314.3 204 77.0
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 7.0e-84 314.3 200 77.0
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 7.0e-84 314.3 222 69.8
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 9.1e-84 313.9 204 75.5
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 9.1e-84 313.9 204 73.5
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 1.2e-83 313.5 204 74.0
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 1.6e-83 313.2 204 75.0
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 2.0e-83 312.8 204 73.0
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 3.5e-83 312.0 204 73.5
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 4.5e-83 311.6 204 71.6
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 5.9e-83 311.2 204 72.5
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 1.0e-82 310.5 204 73.5
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 1.0e-82 310.5 204 74.5
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 2.9e-82 308.9 204 72.5
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 2.9e-82 308.9 204 72.1
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.9e-82 308.9 242 65.3
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 2.9e-82 308.9 204 74.0
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 6.5e-82 307.8 223 71.7
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 1.9e-81 306.2 205 74.1
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 2.5e-81 305.8 204 74.5
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 2.7e-80 302.4 204 70.1
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 6.1e-80 301.2 196 77.0
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 8.0e-80 300.8 199 72.4
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 2.3e-79 299.3 204 71.6
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 3.0e-79 298.9 204 69.6
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 1.4e-76 290.0 204 70.1
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 2.5e-73 279.3 192 70.3
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 7.2e-73 277.7 219 64.4
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 2.3e-71 272.7 173 76.3
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 6.8e-71 271.2 204 61.8
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 8.8e-71 270.8 204 65.2
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 2.6e-70 269.2 202 63.4
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 3.7e-69 265.4 184 71.2
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 1.3e-66 256.9 204 65.7
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.7e-61 238.8 202 58.4
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 2.4e-60 236.1 148 73.0
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 3.8e-58 228.8 198 57.6
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 1.9e-57 226.5 201 56.2
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 9.5e-57 224.2 201 55.7
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 1.1e-52 210.7 204 54.9
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 8.6e-50 201.1 128 75.0
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.3e-49 198.7 152 59.2
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 7.3e-49 198.0 204 52.9
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 8.0e-48 194.5 201 46.8
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.2e-45 186.4 177 58.8
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.1e-41 174.1 155 51.0
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 6.4e-37 158.3 220 42.3
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 4.6e-35 152.1 155 45.2
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.7e-34 150.2 218 40.4
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 4.7e-32 142.1 90 74.4
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 2.4e-31 139.8 88 72.7
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 7.6e-30 134.8 204 40.2
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 2.9e-29 132.9 85 71.8
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 9.6e-25 117.9 68 76.5
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.6e-24 117.1 85 64.7
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 4.0e-23 112.5 205 35.6
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 7.6e-22 108.2 83 59.0
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 4.2e-20 102.4 56 94.6
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.7e-18 97.1 93 52.7
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.0e-18 96.3 91 53.8
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 3.9e-18 95.9 57 84.2
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.3e-16 90.9 203 33.5
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 4.0e-15 85.9 54 77.8
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 3.5e-11 72.8 59 57.6
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 6.9e-07 58.5 59 47.5


User provided reference genes

Program Settings