Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 1.4e-232 809.3 424 100.0
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 5.5e-136 488.4 334 75.1
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 1.0e-134 484.2 380 66.6
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 2.6e-133 479.6 425 63.5
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.3e-132 477.2 351 70.9
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.3e-132 477.2 351 70.9
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 2.2e-132 476.5 420 62.9
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.2e-132 476.5 384 67.2
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.2e-130 470.7 393 65.4
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 2.6e-130 469.5 315 78.1
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 4.5e-130 468.8 393 64.6
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 5.9e-130 468.4 422 63.5
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 2.9e-129 466.1 417 63.1
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.4e-128 463.8 422 63.3
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 2.5e-128 463.0 419 62.3
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 4.2e-128 462.2 426 63.4
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 4.2e-128 462.2 319 74.0
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 5.5e-128 461.8 380 66.8
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 1.6e-127 460.3 313 75.1
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 2.7e-127 459.5 440 60.5
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 4.7e-127 458.8 421 62.0
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 6.1e-127 458.4 317 74.4
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 1.0e-126 457.6 419 59.9
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.4e-126 457.2 419 60.6
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 1.4e-126 457.2 425 60.7
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 3.0e-126 456.1 433 58.2
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 6.7e-126 454.9 372 66.4
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.5e-125 453.8 420 61.4
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 2.0e-125 453.4 308 72.1
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 2.6e-125 453.0 409 60.4
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 3.3e-125 452.6 422 61.6
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 4.4e-125 452.2 347 68.0
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 5.7e-125 451.8 323 70.9
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 9.7e-125 451.1 320 72.2
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 9.7e-125 451.1 425 62.1
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 3.7e-124 449.1 350 68.0
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 4.8e-124 448.7 422 61.1
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 8.2e-124 448.0 403 61.8
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 8.2e-124 448.0 348 68.7
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 8.2e-124 448.0 376 65.4
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 1.1e-123 447.6 410 60.7
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 1.1e-123 447.6 314 72.3
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.1e-123 447.6 314 72.0
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 1.8e-123 446.8 377 66.0
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 1.8e-123 446.8 470 54.9
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 3.1e-123 446.0 422 60.2
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 3.1e-123 446.0 422 60.2
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 3.1e-123 446.0 425 59.5
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.1e-123 446.0 310 74.5
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 5.3e-123 445.3 422 60.0
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 7.0e-123 444.9 348 67.2
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 7.0e-123 444.9 422 60.2
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 9.1e-123 444.5 425 59.8
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 1.2e-122 444.1 422 60.0
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 1.6e-122 443.7 342 67.0
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 1.6e-122 443.7 357 66.4
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 1.6e-122 443.7 374 63.9
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 2.6e-122 443.0 309 73.5
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 4.5e-122 442.2 426 58.0
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 5.9e-122 441.8 400 61.2
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 5.9e-122 441.8 310 75.5
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.3e-121 440.7 426 59.6
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 1.3e-121 440.7 424 59.7
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 2.2e-121 439.9 359 65.7
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 3.8e-121 439.1 420 59.5
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 6.5e-121 438.3 423 58.9
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 1.5e-120 437.2 315 69.8
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 2.5e-120 436.4 322 70.2
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 4.2e-120 435.6 314 69.7
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 4.2e-120 435.6 420 58.8
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 7.2e-120 434.9 393 62.3
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 7.2e-120 434.9 315 69.8
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 9.4e-120 434.5 313 71.2
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 1.6e-119 433.7 374 62.8
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 1.6e-119 433.7 310 72.3
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 3.6e-119 432.6 315 69.5
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 4.7e-119 432.2 349 65.6
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 8.0e-119 431.4 363 64.5
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 1.8e-118 430.3 387 62.5
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 6.7e-118 428.3 333 67.6
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 6.7e-118 428.3 392 58.9
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.2e-117 427.6 413 57.6
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 1.5e-117 427.2 389 62.5
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 2.6e-117 426.4 355 63.4
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 3.3e-117 426.0 358 62.8
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 4.4e-117 425.6 398 58.8
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 5.7e-117 425.2 416 57.2
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 3.7e-116 422.5 353 64.6
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 4.0e-110 402.5 420 56.0
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 8.3e-108 394.8 423 56.5
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 1.1e-107 394.4 378 59.5
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.4e-107 393.3 314 66.2
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 7.0e-107 391.7 266 75.6
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.0e-106 390.2 322 64.6
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 5.9e-106 388.7 397 57.9
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 5.0e-105 385.6 392 56.4
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 3.3e-104 382.9 385 59.0
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 6.3e-100 368.6 260 72.7
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 1.8e-99 367.1 317 61.8
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 2.3e-97 360.1 259 71.4
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 1.1e-96 357.8 279 64.5
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.5e-96 357.5 391 52.9
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 9.5e-96 354.8 259 69.5
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 3.1e-94 349.7 325 59.1
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 4.6e-90 335.9 412 50.7
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 6.6e-89 332.0 333 57.1
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 6.2e-87 325.5 351 54.1
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 2.6e-85 320.1 276 61.6
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 8.3e-84 315.1 322 54.7
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.1e-83 312.8 282 56.0
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.6e-82 310.8 384 49.0
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 2.3e-78 297.0 240 66.2
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 8.9e-78 295.0 343 49.0
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.3e-76 291.2 281 57.7
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 5.1e-73 279.3 214 64.0
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 2.3e-65 253.8 283 49.8
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 1.1e-62 245.0 205 65.9
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 3.4e-61 240.0 178 66.9
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 8.4e-60 235.3 277 49.1
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 1.2e-58 231.5 283 45.6
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 2.7e-58 230.3 289 47.8
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 8.7e-57 225.3 132 81.1
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.1e-56 224.9 234 55.6
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 1.2e-45 188.3 113 80.5
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 1.1e-43 181.8 244 45.5
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 1.9e-40 171.0 260 38.1
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 6.7e-33 146.0 106 67.9
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 8.7e-33 145.6 129 58.1
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 3.1e-30 137.1 121 59.5
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 6.1e-26 122.9 123 52.0
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 4.3e-24 116.7 177 40.1
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 4.3e-24 116.7 105 56.2
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 6.9e-22 109.4 84 63.1
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 4.5e-21 106.7 232 36.2
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 7.7e-21 105.9 88 61.4
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 8.8e-17 92.4 69 68.1
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 2.0e-16 91.3 67 71.6
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 1.3e-15 88.6 69 65.2
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 2.5e-11 74.3 65 55.4
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 5.2e-09 66.6 109 36.7
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 2.6e-08 64.3 75 44.0
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 3.3e-08 63.9 40 82.5
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 9.7e-08 62.4 36 80.6


User provided reference genes

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