Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g21410 Coffea canephora HOM05D000068 ORTHO05D004908 1.3e-51 206.1 104 100.0
Cc01_g15510 Coffea canephora HOM05D000068 ORTHO05D004908 1.9e-18 95.9 76 71.1
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 7.4e-18 94.0 59 81.4
Cfa011859 Carpinus fangiana HOM05D000068 ORTHO05D004908 9.7e-18 93.6 76 67.1
Haze_24493 Corylus avellana HOM05D000068 ORTHO05D004908 9.7e-18 93.6 76 67.1
Gohir.A03G022800 Gossypium hirsutum HOM05D000068 ORTHO05D004908 1.6e-17 92.8 59 79.7
Gohir.D03G145900 Gossypium hirsutum HOM05D000068 ORTHO05D004908 1.6e-17 92.8 59 79.7
Gorai.003G153100 Gossypium raimondii HOM05D000068 ORTHO05D004908 1.6e-17 92.8 59 79.7
Ciclev10000439m.g Citrus clementina HOM05D000068 ORTHO05D004908 2.2e-17 92.4 59 79.7
GSVIVG01024527001 Vitis vinifera HOM05D000068 ORTHO05D004908 2.2e-17 92.4 76 65.8
MSTRG.21272 Avicennia marina HOM05D000068 ORTHO05D004908 2.8e-17 92.0 59 78.0
Cpa.g.sc2.263 Carica papaya HOM05D000068 ORTHO05D004908 3.7e-17 91.7 59 79.7
Duzib168G2364 Durio zibethinus HOM05D000068 ORTHO05D004908 4.8e-17 91.3 59 78.0
FAN21G0421 Fragaria x ananassa HOM05D000068 ORTHO05D004908 4.8e-17 91.3 59 78.0
FAN25G2097 Fragaria x ananassa HOM05D000068 ORTHO05D004908 4.8e-17 91.3 59 78.0
MD03G1047300 Malus domestica HOM05D000068 ORTHO05D004908 4.8e-17 91.3 59 78.0
Nitab4.5_0001025g0040 Nicotiana tabacum HOM05D000068 ORTHO05D004908 4.8e-17 91.3 59 79.7
Peaxi162Scf00766g00210 Petunia axillaris HOM05D000068 ORTHO05D004908 4.8e-17 91.3 59 79.7
Prupe.6G038500 Prunus persica HOM05D000068 ORTHO05D004908 4.8e-17 91.3 59 78.0
RcHm_v2.0_Chr5g0073901 Rosa chinensis HOM05D000068 ORTHO05D004908 4.8e-17 91.3 59 78.0
Actinidia23828 Actinidia chinensis HOM05D000068 ORTHO05D004908 6.3e-17 90.9 59 78.0
Actinidia34509 Actinidia chinensis HOM05D000068 ORTHO05D004908 6.3e-17 90.9 59 78.0
Ca_05731_v3 Cicer arietinum L. HOM05D000068 ORTHO05D004908 6.3e-17 90.9 59 78.0
Oeu023896.3 Olea europaea HOM05D000068 ORTHO05D004908 6.3e-17 90.9 59 78.0
Oeu034744.1 Olea europaea HOM05D000068 ORTHO05D004908 6.3e-17 90.9 59 78.0
ClCG02G018950 Citrullus lanatus HOM05D000068 ORTHO05D004908 8.2e-17 90.5 59 78.0
MELO3C019594.2 Cucumis melo HOM05D000068 ORTHO05D004908 8.2e-17 90.5 59 78.0
CsaV3_6G013240 Cucumis sativus L. HOM05D000068 ORTHO05D004908 8.2e-17 90.5 59 78.0
Sed0017529 Sechium edule HOM05D000068 ORTHO05D004908 8.2e-17 90.5 59 78.0
Sed0027288 Sechium edule HOM05D000068 ORTHO05D004908 8.2e-17 90.5 59 78.0
TWI31G0374 Tripterygium wilfordii HOM05D000068 ORTHO05D004908 8.2e-17 90.5 59 78.0
Aa31LG11G60 Aethionema arabicum HOM05D000068 ORTHO05D004908 1.1e-16 90.1 59 76.3
AL8G34370 Arabidopsis lyrata HOM05D000068 ORTHO05D004908 1.1e-16 90.1 59 76.3
CANSAT54G1816 Cannabis sativa HOM05D000068 ORTHO05D004908 1.1e-16 90.1 59 76.3
Carub.0008s1881 Capsella rubella HOM05D000068 ORTHO05D004908 1.1e-16 90.1 59 76.3
AUR62027443 Chenopodium quinoa HOM05D000068 ORTHO05D004908 1.1e-16 90.1 59 76.3
AUR62031258 Chenopodium quinoa HOM05D000068 ORTHO05D004908 1.1e-16 90.1 59 76.3
Eucgr.B04035 Eucalyptus grandis HOM05D000068 ORTHO05D004908 1.1e-16 90.1 59 76.3
FvH4_3g41120 Fragaria vesca HOM05D000068 ORTHO05D004908 1.1e-16 90.1 59 76.3
FAN11G2110 Fragaria x ananassa HOM05D000068 ORTHO05D004908 1.1e-16 90.1 59 76.3
FAN16G0787 Fragaria x ananassa HOM05D000068 ORTHO05D004908 1.1e-16 90.1 59 76.3
Medtr5g075960 Medicago truncatula HOM05D000068 ORTHO05D004908 1.1e-16 90.1 59 76.3
Nn7g37145 Nelumbo nucifera HOM05D000068 ORTHO05D004908 1.1e-16 90.1 70 68.6
SalBow6G1344 Salvia bowleyana HOM05D000068 ORTHO05D004908 1.1e-16 90.1 59 76.3
Sc21g0004810 Simmondsia chinensis HOM05D000068 ORTHO05D004908 1.1e-16 90.1 59 76.3
ECA247G3429 Erigeron canadensis HOM05D000068 ORTHO05D004908 1.4e-16 89.7 59 74.6
Lalb_Chr17g0345721 Lupinus albus HOM05D000068 ORTHO05D004908 1.4e-16 89.7 59 76.3
MD11G1049800 Malus domestica HOM05D000068 ORTHO05D004908 1.4e-16 89.7 59 76.3
Psat2g050120 Pisum sativum HOM05D000068 ORTHO05D004908 1.4e-16 89.7 59 76.3
Solyc09g055350.3 Solanum lycopersicum HOM05D000068 ORTHO05D004908 1.4e-16 89.7 59 76.3
Sopen09g017780 Solanum pennellii HOM05D000068 ORTHO05D004908 1.4e-16 89.7 59 76.3
Thecc.09G365900 Theobroma cacao HOM05D000068 ORTHO05D004908 1.4e-16 89.7 59 78.0
arahy.Tifrunner.gnm1.ann1.953C08 Arachis hypogaea HOM05D000068 ORTHO05D004908 1.8e-16 89.4 59 76.3
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 1.8e-16 89.4 59 76.3
Lj2A1105G55 Lonicera japonica HOM05D000068 ORTHO05D004908 1.8e-16 89.4 59 76.3
TPR.G15393 Trifolium pratense HOM05D000068 ORTHO05D004908 1.8e-16 89.4 59 74.6
TPR.G15395 Trifolium pratense HOM05D000068 ORTHO05D004908 1.8e-16 89.4 59 76.3
Atru.chr10.2353 Acer truncatum HOM05D000068 ORTHO05D004908 2.4e-16 89.0 59 74.6
PSO339G5917 Papaver somniferum HOM05D000068 ORTHO05D004908 2.4e-16 89.0 59 74.6
PSO384G2518 Papaver somniferum HOM05D000068 ORTHO05D004908 2.4e-16 89.0 59 74.6
unitig_62.g23946 Utricularia gibba HOM05D000068 ORTHO05D004908 2.4e-16 89.0 59 76.3
AT5G58270 Arabidopsis thaliana HOM05D000068 ORTHO05D004908 3.1e-16 88.6 59 74.6
EL10Ac8g19280 Beta vulgaris HOM05D000068 ORTHO05D004908 3.1e-16 88.6 59 74.6
Thhalv10012795m.g Eutrema salsugineum HOM05D000068 ORTHO05D004908 3.1e-16 88.6 59 74.6
PGR102G3090 Punica granatum HOM05D000068 ORTHO05D004908 3.1e-16 88.6 58 75.9
Sabra13G0128400 Salix brachista HOM05D000068 ORTHO05D004908 3.1e-16 88.6 59 76.3
Sp6g19930 Schrenkiella parvula HOM05D000068 ORTHO05D004908 3.1e-16 88.6 59 74.6
THA.LOC104819154 Tarenaya hassleriana HOM05D000068 ORTHO05D004908 3.1e-16 88.6 59 74.6
BcaB01g04541 Brassica carinata HOM05D000068 ORTHO05D004908 4.1e-16 88.2 59 74.6
A10p15950 Brassica napus HOM05D000068 ORTHO05D004908 4.1e-16 88.2 59 74.6
C09p50100 Brassica napus HOM05D000068 ORTHO05D004908 4.1e-16 88.2 59 74.6
ECA248G2583 Erigeron canadensis HOM05D000068 ORTHO05D004908 4.1e-16 88.2 58 75.9
Glyma.02G238300 Glycine max HOM05D000068 ORTHO05D004908 4.1e-16 88.2 59 74.6
Glyma.14G207200 Glycine max HOM05D000068 ORTHO05D004908 4.1e-16 88.2 59 74.6
HanXRQChr11g0338251 Helianthus annuus HOM05D000068 ORTHO05D004908 4.1e-16 88.2 58 75.9
HanXRQChr11g0342501 Helianthus annuus HOM05D000068 ORTHO05D004908 4.1e-16 88.2 58 75.9
QL01p023679 Quercus lobata HOM05D000068 ORTHO05D004908 4.1e-16 88.2 59 74.6
Lsat_1_v5_gn_5_176940 Lactuca sativa HOM05D000068 ORTHO05D004908 5.3e-16 87.8 58 75.9
TAR633G0152 Trochodendron aralioides HOM05D000068 ORTHO05D004908 5.3e-16 87.8 59 72.9
BcaB01g04484 Brassica carinata HOM05D000068 ORTHO05D004908 6.9e-16 87.4 59 72.9
BcaB01g04535 Brassica carinata HOM05D000068 ORTHO05D004908 6.9e-16 87.4 59 72.9
A03p12330 Brassica napus HOM05D000068 ORTHO05D004908 6.9e-16 87.4 59 72.9
C03p14480 Brassica napus HOM05D000068 ORTHO05D004908 6.9e-16 87.4 59 72.9
BolC3t13890H Brassica oleracea HOM05D000068 ORTHO05D004908 6.9e-16 87.4 59 72.9
BraA03t10545Z Brassica rapa HOM05D000068 ORTHO05D004908 6.9e-16 87.4 59 72.9
COL.COLO4_11230 Corchorus olitorius HOM05D000068 ORTHO05D004908 6.9e-16 87.4 59 74.6
Manes.02G209032 Manihot esculenta HOM05D000068 ORTHO05D004908 6.9e-16 87.4 59 72.9
Potri.013G160500 Populus trichocarpa HOM05D000068 ORTHO05D004908 6.9e-16 87.4 59 74.6
CiPaw.13G060000 Carya illinoinensis HOM05D000068 ORTHO05D004908 9.0e-16 87.0 59 74.6
ATR1127G155 Amborella trichopoda HOM05D000068 ORTHO05D004908 1.2e-15 86.7 59 72.9
BraA10t43629Z Brassica rapa HOM05D000068 ORTHO05D004908 1.2e-15 86.7 59 72.9
Lsat_1_v5_gn_9_15441 Lactuca sativa HOM05D000068 ORTHO05D004908 1.2e-15 86.7 59 72.9
Potri.019G132800 Populus trichocarpa HOM05D000068 ORTHO05D004908 1.2e-15 86.7 59 74.6
Aqoxy2G00707 Aquilegia oxysepala HOM05D000068 ORTHO05D004908 1.5e-15 86.3 58 75.9
PSO541G0861 Papaver somniferum HOM05D000068 ORTHO05D004908 1.5e-15 86.3 59 72.9
DCAR_018588 Daucus carota HOM05D000068 ORTHO05D004908 2.0e-15 85.9 59 74.6
Lalb_Chr04g0251601 Lupinus albus HOM05D000068 ORTHO05D004908 2.0e-15 85.9 58 72.4
LjContig00141g0025258 Lotus japonicus HOM05D000068 ORTHO05D004908 2.6e-15 85.5 58 77.6
CiPaw.14G048500 Carya illinoinensis HOM05D000068 ORTHO05D004908 3.4e-15 85.1 59 74.6
Medtr5g075955 Medicago truncatula HOM05D000068 ORTHO05D004908 3.4e-15 85.1 59 72.9
Aa31LG10G11520 Aethionema arabicum HOM05D000068 ORTHO05D004908 5.9e-15 84.3 59 72.9
HanXRQChr08g0231151 Helianthus annuus HOM05D000068 ORTHO05D004908 5.9e-15 84.3 59 69.5
Migut.D00800 Erythranthe guttata HOM05D000068 ORTHO05D004908 7.7e-15 84.0 59 71.2
Pp3c1_32090 Physcomitrium patens HOM05D000068 ORTHO05D004908 7.7e-15 84.0 59 69.5
PSO675G8940 Papaver somniferum HOM05D000068 ORTHO05D004908 1.0e-14 83.6 59 71.2
Sp7g26600 Schrenkiella parvula HOM05D000068 ORTHO05D004908 1.0e-14 83.6 58 72.4
Phvul.008G243800 Phaseolus vulgaris HOM05D000068 ORTHO05D004908 1.3e-14 83.2 59 69.5
Sabra19G0129100 Salix brachista HOM05D000068 ORTHO05D004908 1.3e-14 83.2 59 71.2
SEGI_00370 Sequoiadendron giganteum HOM05D000068 ORTHO05D004908 1.3e-14 83.2 59 67.8
Os06g0128300 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D004908 1.7e-14 82.8 59 69.5
HPP92_001430 Vanilla planifolia HOM05D000068 ORTHO05D004908 1.7e-14 82.8 59 71.2
Manes.10G082900 Manihot esculenta HOM05D000068 ORTHO05D004908 2.2e-14 82.4 59 71.2
Mapoly0049s0019 Marchantia polymorpha HOM05D000068 ORTHO05D004908 2.2e-14 82.4 59 69.5
SMO143G0068 Selaginella moellendorffii HOM05D000068 ORTHO05D004908 2.2e-14 82.4 79 55.7
A01p09310 Brassica napus HOM05D000068 ORTHO05D004908 3.8e-14 81.6 57 71.9
BraA01t00875Z Brassica rapa HOM05D000068 ORTHO05D004908 3.8e-14 81.6 57 71.9
Thhalv10027580m.g Eutrema salsugineum HOM05D000068 ORTHO05D004908 3.8e-14 81.6 57 71.9
Zm00001eb015840 Zea mays HOM05D000068 ORTHO05D004908 3.8e-14 81.6 59 66.1
BcaNung04291 Brassica carinata HOM05D000068 ORTHO05D004908 5.0e-14 81.3 57 70.2
BolC1t01053H Brassica oleracea HOM05D000068 ORTHO05D004908 5.0e-14 81.3 57 70.2
Pp3c14_15010 Physcomitrium patens HOM05D000068 ORTHO05D004908 5.0e-14 81.3 59 67.8
Pp3c14_15017 Physcomitrium patens HOM05D000068 ORTHO05D004908 5.0e-14 81.3 59 67.8
AL7G23910 Arabidopsis lyrata HOM05D000068 ORTHO05D004908 8.5e-14 80.5 57 70.2
AT4G28630 Arabidopsis thaliana HOM05D000068 ORTHO05D004908 8.5e-14 80.5 57 70.2
Carub.0007s1203 Capsella rubella HOM05D000068 ORTHO05D004908 8.5e-14 80.5 57 70.2
BcaNung04693 Brassica carinata HOM05D000068 ORTHO05D004908 1.4e-13 79.7 57 66.7
C01p10890 Brassica napus HOM05D000068 ORTHO05D004908 1.4e-13 79.7 57 68.4
AagrBONN_evm.TU.Sc2ySwM_228.5693 Anthoceros agrestis HOM05D000068 ORTHO05D004908 1.2e-12 76.6 59 62.7
AL7G23920 Arabidopsis lyrata HOM05D000068 ORTHO05D004908 2.7e-12 75.5 58 67.2
AT4G28620 Arabidopsis thaliana HOM05D000068 ORTHO05D004908 2.7e-12 75.5 58 67.2
CBR_g866 Chara braunii HOM05D000068 ORTHO05D004908 4.6e-12 74.7 59 61.0
DCAR_012718 Daucus carota HOM05D000068 ORTHO05D004908 1.4e-11 73.2 48 75.0
Rhsim01G0244900 Rhododendron simsii HOM05D000068 ORTHO05D004908 5.1e-11 71.2 48 72.9
Haze_26871 Corylus avellana HOM05D000068 ORTHO05D004908 1.5e-10 69.7 70 48.6
BcaC04g19897 Brassica carinata HOM05D000068 ORTHO05D004908 5.7e-10 67.8 59 64.4
BolC9t57863H Brassica oleracea HOM05D000068 ORTHO05D004908 5.7e-10 67.8 59 64.4
CAN.G369.4 Capsicum annuum HOM05D000068 ORTHO05D004908 2.8e-09 65.5 46 76.1
Cre17.g727650 Chlamydomonas reinhardtii HOM05D000068 ORTHO05D004908 1.4e-08 63.2 59 49.2
PRCOL_00005100 Prasinoderma coloniale HOM05D000068 ORTHO05D004908 3.1e-08 62.0 59 45.8
Cfa024921 Carpinus fangiana HOM05D000068 ORTHO05D004908 4.1e-08 61.6 59 50.8
MCO05G572 Micromonas commoda HOM05D000068 ORTHO05D004908 4.5e-07 58.2 56 51.8
CDE12G0650 Ceratophyllum demersum HOM05D000068 ORTHO05D004908 5.9e-07 57.8 44 63.6
Cc04_g13470 Coffea canephora HOM05D000068 ORTHO05D154390 5.9e-07 57.8 43 74.4


User provided reference genes

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