Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 4.3e-138 494.6 237 100.0
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 2.0e-103 379.4 189 92.6
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 2.6e-103 379.0 189 93.1
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 1.7e-102 376.3 192 89.6
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 4.9e-102 374.8 189 89.9
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 2.5e-101 372.5 189 89.4
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 5.5e-101 371.3 189 89.4
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 1.2e-100 370.2 183 93.4
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 2.7e-100 369.0 188 89.9
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 4.6e-100 368.2 189 88.4
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 6.0e-100 367.9 189 88.9
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 7.9e-100 367.5 189 86.8
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.8e-99 366.3 189 86.8
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 3.9e-99 365.2 189 87.8
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 5.1e-99 364.8 189 87.8
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 1.5e-98 363.2 189 86.8
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 1.9e-98 362.8 178 93.3
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 1.9e-98 362.8 178 93.3
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 2.5e-98 362.5 189 87.3
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 5.7e-98 361.3 189 87.8
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 7.4e-98 360.9 189 85.7
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 1.3e-97 360.1 189 84.7
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 1.6e-97 359.8 189 85.2
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 2.2e-97 359.4 189 85.2
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 2.2e-97 359.4 188 86.2
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 2.8e-97 359.0 189 84.7
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 2.8e-97 359.0 189 84.7
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 2.8e-97 359.0 189 85.2
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 3.7e-97 358.6 189 84.7
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 8.2e-97 357.5 189 84.7
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 1.1e-96 357.1 197 84.8
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 1.1e-96 357.1 189 86.8
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.4e-96 356.7 189 85.2
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 3.1e-96 355.5 188 84.0
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 3.1e-96 355.5 189 84.7
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 6.9e-96 354.4 189 85.7
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 9.0e-96 354.0 189 84.7
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 9.0e-96 354.0 189 84.1
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 1.5e-95 353.2 189 84.1
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 2.0e-95 352.8 189 83.6
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 2.0e-95 352.8 189 85.2
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 2.0e-95 352.8 189 85.2
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 3.8e-94 348.6 188 84.0
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 6.5e-94 347.8 191 80.1
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 8.5e-94 347.4 189 81.0
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 1.9e-93 346.3 189 80.4
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 3.2e-93 345.5 189 82.5
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 3.2e-93 345.5 189 82.5
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 4.2e-93 345.1 187 84.5
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 9.4e-93 344.0 189 80.4
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 3.6e-92 342.0 189 80.4
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 6.1e-92 341.3 222 72.1
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 1.0e-91 340.5 189 82.0
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 1.4e-91 340.1 187 81.8
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 1.8e-91 339.7 179 86.6
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 2.3e-91 339.3 188 79.8
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 2.3e-91 339.3 189 81.5
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 6.7e-91 337.8 188 79.3
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 6.7e-91 337.8 182 84.6
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 1.5e-90 336.7 178 83.7
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 2.0e-90 336.3 188 79.3
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 9.7e-90 334.0 188 78.2
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 1.7e-89 333.2 188 77.7
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 3.7e-89 332.0 189 78.3
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 2.4e-88 329.3 233 69.1
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.4e-88 329.3 169 88.2
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 4.5e-87 325.1 189 77.2
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 5.9e-87 324.7 191 78.5
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 1.7e-86 323.2 190 77.4
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 2.2e-86 322.8 188 75.0
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 2.9e-86 322.4 165 88.5
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 1.9e-85 319.7 190 74.7
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 1.6e-84 316.6 207 72.9
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 1.6e-84 316.6 178 80.3
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 2.7e-84 315.8 162 87.7
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 2.7e-84 315.8 184 77.7
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 7.9e-84 314.3 190 76.8
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 1.4e-83 313.5 190 76.3
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 1.4e-83 313.5 190 76.3
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 1.4e-83 313.5 190 76.3
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 1.4e-83 313.5 190 76.3
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 3.0e-83 312.4 166 83.1
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 5.1e-83 311.6 184 76.6
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 1.5e-82 310.1 190 75.3
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.6e-82 309.3 189 75.7
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.6e-82 309.3 190 75.3
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 2.6e-82 309.3 189 75.7
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 2.6e-82 309.3 191 76.4
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 2.8e-81 305.8 189 74.6
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 3.7e-81 305.4 161 86.3
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.8e-80 303.1 185 74.6
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 4.1e-80 302.0 187 72.7
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.5e-79 300.1 185 73.0
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 2.0e-79 299.7 189 73.0
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 2.6e-79 299.3 164 83.5
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 1.0e-78 297.4 190 73.7
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 1.0e-78 297.4 190 73.7
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 1.0e-78 297.4 190 73.7
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.3e-78 297.0 190 73.7
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 1.7e-78 296.6 190 73.2
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 1.7e-78 296.6 190 73.2
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.7e-78 296.6 189 72.5
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 2.2e-78 296.2 190 73.2
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 3.8e-78 295.4 190 72.6
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 7.2e-77 291.2 161 85.1
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 7.2e-77 291.2 156 83.3
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.2e-76 290.4 149 86.6
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 2.7e-76 289.3 194 68.0
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.9e-75 285.4 188 69.1
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.1e-74 283.9 156 81.4
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.5e-74 283.5 156 81.4
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 2.6e-74 282.7 188 68.6
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.6e-74 282.7 188 68.6
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.6e-74 282.7 188 68.6
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 1.8e-72 276.6 188 67.0
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 5.3e-72 275.0 185 68.1
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 1.3e-70 270.4 177 69.5
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 7.2e-69 264.6 189 69.8
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 2.7e-68 262.7 189 63.5
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 3.6e-68 262.3 190 64.2
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 6.1e-68 261.5 136 84.6
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 5.2e-67 258.5 189 61.4
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 1.2e-66 257.3 145 82.8
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 2.8e-65 252.7 189 63.5
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 6.3e-65 251.5 163 71.8
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 1.2e-63 247.3 161 70.8
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 5.2e-59 231.9 156 69.2
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 7.5e-58 228.0 190 57.4
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 8.3e-57 224.6 154 66.9
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 2.7e-55 219.5 151 68.2
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 4.2e-53 212.2 187 53.5
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 8.0e-52 208.0 189 50.8
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 1.4e-51 207.2 192 52.1
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.4e-51 207.2 103 87.4
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 3.5e-47 192.6 100 88.0
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 5.9e-47 191.8 187 49.7
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 2.3e-43 179.9 113 74.3
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 8.9e-43 177.9 84 94.0
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 4.1e-40 169.1 111 72.1
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 2.7e-31 139.8 79 78.5
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.5e-26 124.0 75 76.0
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.4e-26 122.5 89 62.9
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 2.2e-25 120.2 85 68.2
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 3.7e-25 119.4 72 76.4
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 3.2e-24 116.3 104 52.9
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 4.2e-16 89.4 55 70.9
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 4.2e-08 62.8 156 26.9
Mapoly0002s0262 Marchantia polymorpha HOM05D002560 ORTHO05D003782 1.3e-06 57.8 150 27.3
Pp3c17_3950 Physcomitrium patens HOM05D002560 ORTHO05D003782 2.3e-06 57.0 151 27.2


User provided reference genes

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