Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g19090 Coffea canephora HOM05D000246 ORTHO05D015415 1.1e-37 159.5 78 100.0
Cc07_g19140 Coffea canephora HOM05D000246 ORTHO05D004600 2.1e-17 92.0 71 60.6
ClCG05G009530 Citrullus lanatus HOM05D000246 ORTHO05D005396 9.2e-13 76.6 75 50.7
HanXRQChr03g0065231 Helianthus annuus HOM05D000246 ORTHO05D005396 1.2e-12 76.3 70 51.4
CiPaw.05G049800 Carya illinoinensis HOM05D000246 ORTHO05D005396 1.6e-12 75.9 70 51.4
DCAR_006693 Daucus carota HOM05D000246 ORTHO05D005396 2.0e-12 75.5 75 46.7
AUR62016334 Chenopodium quinoa HOM05D000246 ORTHO05D005396 2.7e-12 75.1 75 45.3
Sabra03G0008800 Salix brachista HOM05D000246 ORTHO05D005396 3.5e-12 74.7 70 51.4
Sabra03G0009400 Salix brachista HOM05D000246 ORTHO05D005396 3.5e-12 74.7 70 51.4
Sc10g0005930 Simmondsia chinensis HOM05D000246 ORTHO05D005396 3.5e-12 74.7 75 48.0
Aqoxy5G02652 Aquilegia oxysepala HOM05D000246 ORTHO05D005396 4.6e-12 74.3 70 50.0
Ciclev10000077m.g Citrus clementina HOM05D000246 ORTHO05D005396 4.6e-12 74.3 70 48.6
MD02G1262900 Malus domestica HOM05D000246 ORTHO05D005396 4.6e-12 74.3 68 52.9
Potri.003G015800 Populus trichocarpa HOM05D000246 ORTHO05D005396 4.6e-12 74.3 70 50.0
Sed0017184 Sechium edule HOM05D000246 ORTHO05D005396 4.6e-12 74.3 75 48.0
Duzib132G0704 Durio zibethinus HOM05D000246 ORTHO05D005396 5.9e-12 73.9 70 50.0
Gohir.A13G035800 Gossypium hirsutum HOM05D000246 ORTHO05D005396 5.9e-12 73.9 75 46.7
Gohir.D13G034100 Gossypium hirsutum HOM05D000246 ORTHO05D005396 5.9e-12 73.9 75 46.7
Gorai.013G038600 Gossypium raimondii HOM05D000246 ORTHO05D005396 5.9e-12 73.9 75 46.7
vmacro01744 Vaccinium macrocarpon HOM05D000246 ORTHO05D005396 5.9e-12 73.9 74 47.3
Actinidia39024 Actinidia chinensis HOM05D000246 ORTHO05D005396 7.8e-12 73.6 70 48.6
QL02p099436 Quercus lobata HOM05D000246 ORTHO05D005396 7.8e-12 73.6 70 50.0
THA.LOC104809610 Tarenaya hassleriana HOM05D000246 ORTHO05D005396 7.8e-12 73.6 75 46.7
Thecc.02G089200 Theobroma cacao HOM05D000246 ORTHO05D005396 7.8e-12 73.6 70 50.0
EL10Ac9g21897 Beta vulgaris HOM05D000246 ORTHO05D005396 1.0e-11 73.2 75 46.7
CANSAT11G0299 Cannabis sativa HOM05D000246 ORTHO05D005396 1.0e-11 73.2 70 48.6
GSVIVG01023325001 Vitis vinifera HOM05D000246 ORTHO05D005396 1.0e-11 73.2 70 50.0
CSS0013369 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005396 1.3e-11 72.8 70 48.6
CSS0032566 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005396 1.3e-11 72.8 70 48.6
Haze_01763 Corylus avellana HOM05D000246 ORTHO05D005396 1.3e-11 72.8 70 50.0
MELO3C019447.2 Cucumis melo HOM05D000246 ORTHO05D005396 1.3e-11 72.8 75 48.0
CsaV3_3G019190 Cucumis sativus L. HOM05D000246 ORTHO05D005396 1.3e-11 72.8 75 48.0
Hma1.2p1_2221F.1_g317340 Hydrangea macrophylla HOM05D000246 ORTHO05D005396 1.3e-11 72.8 66 51.5
Hma1.2p1_3213F.1_g334020 Hydrangea macrophylla HOM05D000246 ORTHO05D005396 1.3e-11 72.8 66 51.5
Sp1g09640 Schrenkiella parvula HOM05D000246 ORTHO05D005396 1.3e-11 72.8 75 46.7
Hund06556 Selenicereus undatus HOM05D000246 ORTHO05D005396 1.3e-11 72.8 70 48.6
CAN.G798.21 Capsicum annuum HOM05D000246 ORTHO05D005396 2.3e-11 72.0 75 45.3
Cc02_g22770 Coffea canephora HOM05D000246 ORTHO05D005396 2.3e-11 72.0 70 48.6
Peaxi162Scf00011g00639 Petunia axillaris HOM05D000246 ORTHO05D005396 2.3e-11 72.0 75 45.3
Atru.chr6.554 Acer truncatum HOM05D000246 ORTHO05D005396 2.9e-11 71.6 70 48.6
Ah.01g020570 Amaranthus hybridus HOM05D000246 ORTHO05D005396 2.9e-11 71.6 74 47.3
Nitab4.5_0001744g0020 Nicotiana tabacum HOM05D000246 ORTHO05D005396 2.9e-11 71.6 75 48.0
Solyc01g103960.3 Solanum lycopersicum HOM05D000246 ORTHO05D005396 2.9e-11 71.6 75 45.3
Sopen01g046350 Solanum pennellii HOM05D000246 ORTHO05D005396 2.9e-11 71.6 75 45.3
TWI59G0870 Tripterygium wilfordii HOM05D000246 ORTHO05D005396 2.9e-11 71.6 75 46.7
BcaC07g38599 Brassica carinata HOM05D000246 ORTHO05D005396 3.9e-11 71.2 69 47.8
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 3.9e-11 71.2 69 47.8
A08p33740 Brassica napus HOM05D000246 ORTHO05D005396 3.9e-11 71.2 69 47.8
C08p14030 Brassica napus HOM05D000246 ORTHO05D005396 3.9e-11 71.2 69 47.8
BolC8t49040H Brassica oleracea HOM05D000246 ORTHO05D005396 3.9e-11 71.2 69 47.8
COL.COLO4_11772 Corchorus olitorius HOM05D000246 ORTHO05D005396 3.9e-11 71.2 70 47.1
Thhalv10006602m.g Eutrema salsugineum HOM05D000246 ORTHO05D005396 3.9e-11 71.2 75 45.3
Lsat_1_v5_gn_9_121000 Lactuca sativa HOM05D000246 ORTHO05D005396 3.9e-11 71.2 70 47.1
Oeu032246.1 Olea europaea HOM05D000246 ORTHO05D005396 3.9e-11 71.2 65 52.3
Prupe.4G271400 Prunus persica HOM05D000246 ORTHO05D005396 3.9e-11 71.2 70 50.0
AL2G15560 Arabidopsis lyrata HOM05D000246 ORTHO05D005396 5.0e-11 70.9 71 47.9
BcaNung06375 Brassica carinata HOM05D000246 ORTHO05D005396 5.0e-11 70.9 75 45.3
BraA08t35290Z Brassica rapa HOM05D000246 ORTHO05D005396 5.0e-11 70.9 69 47.8
Glyma.08G188100 Glycine max HOM05D000246 ORTHO05D005396 5.0e-11 70.9 70 47.1
Nn2g14796 Nelumbo nucifera HOM05D000246 ORTHO05D005396 5.0e-11 70.9 70 48.6
PGR042G0910 Punica granatum HOM05D000246 ORTHO05D005396 5.0e-11 70.9 70 47.1
AL1G21910 Arabidopsis lyrata HOM05D000246 ORTHO05D005396 6.6e-11 70.5 75 45.3
AT1G10930 Arabidopsis thaliana HOM05D000246 ORTHO05D005396 6.6e-11 70.5 75 45.3
Lalb_Chr20g0123591 Lupinus albus HOM05D000246 ORTHO05D005396 6.6e-11 70.5 70 48.6
Manes.10G122800 Manihot esculenta HOM05D000246 ORTHO05D005396 6.6e-11 70.5 70 48.6
VMungo0540G2260 Vigna mungo HOM05D000246 ORTHO05D005396 6.6e-11 70.5 70 47.1
Carub.0002s0433 Capsella rubella HOM05D000246 ORTHO05D005396 8.6e-11 70.1 75 48.0
Nitab4.5_0008546g0020 Nicotiana tabacum HOM05D000246 ORTHO05D005396 8.6e-11 70.1 69 50.7
Carub.0001s1051 Capsella rubella HOM05D000246 ORTHO05D005396 1.1e-10 69.7 75 44.0
MD07G1057400 Malus domestica HOM05D000246 ORTHO05D005396 1.1e-10 69.7 70 48.6
arahy.Tifrunner.gnm1.ann1.P64QHW Arachis hypogaea HOM05D000246 ORTHO05D005396 1.5e-10 69.3 70 47.1
arahy.Tifrunner.gnm1.ann1.V2A8TE Arachis hypogaea HOM05D000246 ORTHO05D005396 1.5e-10 69.3 70 47.1
CARHR011150 Cardamine hirsuta HOM05D000246 ORTHO05D005396 1.5e-10 69.3 69 46.4
COL.COLO4_11770 Corchorus olitorius HOM05D000246 ORTHO05D005396 1.5e-10 69.3 70 45.7
Migut.B00814 Erythranthe guttata HOM05D000246 ORTHO05D005396 1.5e-10 69.3 75 44.0
Sp2g03660 Schrenkiella parvula HOM05D000246 ORTHO05D005396 1.5e-10 69.3 75 45.3
BcaB07g31246 Brassica carinata HOM05D000246 ORTHO05D005396 1.9e-10 68.9 75 45.3
A09p17030 Brassica napus HOM05D000246 ORTHO05D005396 1.9e-10 68.9 75 45.3
C08p48440 Brassica napus HOM05D000246 ORTHO05D005396 1.9e-10 68.9 75 45.3
BraA09t37338Z Brassica rapa HOM05D000246 ORTHO05D005396 1.9e-10 68.9 75 45.3
Zm00001eb231860 Zea mays HOM05D000246 ORTHO05D005396 1.9e-10 68.9 75 44.0
BcaC04g22293 Brassica carinata HOM05D000246 ORTHO05D005396 2.5e-10 68.6 75 45.3
C09p21060 Brassica napus HOM05D000246 ORTHO05D005396 2.5e-10 68.6 75 45.3
BolC9t55007H Brassica oleracea HOM05D000246 ORTHO05D005396 2.5e-10 68.6 75 45.3
Cpa.g.sc31.53 Carica papaya HOM05D000246 ORTHO05D005396 2.5e-10 68.6 70 48.6
ECA234G4461 Erigeron canadensis HOM05D000246 ORTHO05D005396 2.5e-10 68.6 69 47.8
FvH4_5g28920 Fragaria vesca HOM05D000246 ORTHO05D005396 2.5e-10 68.6 75 46.7
HanXRQChr10g0298131 Helianthus annuus HOM05D000246 ORTHO05D005396 2.5e-10 68.6 70 47.1
Lj6g0022943 Lotus japonicus HOM05D000246 ORTHO05D005396 2.5e-10 68.6 70 48.6
SGA_v2.0_scaffold110G31337 Striga asiatica HOM05D000246 ORTHO05D005396 2.5e-10 68.6 75 44.0
Lj5C254G21 Lonicera japonica HOM05D000246 ORTHO05D005396 3.3e-10 68.2 70 47.1
TAR624G1231 Trochodendron aralioides HOM05D000246 ORTHO05D005396 3.3e-10 68.2 75 44.0
Glyma.12G170000 Glycine max HOM05D000246 ORTHO05D005396 4.3e-10 67.8 70 45.7
PSO017G1629 Papaver somniferum HOM05D000246 ORTHO05D005396 4.3e-10 67.8 74 44.6
Phvul.006G216200 Phaseolus vulgaris HOM05D000246 ORTHO05D005396 4.3e-10 67.8 70 47.1
A09p64760 Brassica napus HOM05D000246 ORTHO05D005396 5.6e-10 67.4 75 44.0
Lsat_1_v5_gn_5_105701 Lactuca sativa HOM05D000246 ORTHO05D005396 5.6e-10 67.4 70 45.7
BcaNung06376 Brassica carinata HOM05D000246 ORTHO05D005396 7.3e-10 67.0 75 44.0
BolC8t52382H Brassica oleracea HOM05D000246 ORTHO05D005396 7.3e-10 67.0 75 44.0
BraA09t41819Z Brassica rapa HOM05D000246 ORTHO05D005396 7.3e-10 67.0 75 44.0
CARHR051950 Cardamine hirsuta HOM05D000246 ORTHO05D005396 7.3e-10 67.0 69 47.8
Eucgr.G00562 Eucalyptus grandis HOM05D000246 ORTHO05D005396 9.5e-10 66.6 69 46.4
FAN18G0190 Fragaria x ananassa HOM05D000246 ORTHO05D005396 9.5e-10 66.6 75 45.3
MBI17_g20812_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005396 9.5e-10 66.6 70 45.7
Medtr2g006440 Medicago truncatula HOM05D000246 ORTHO05D005396 1.2e-09 66.2 70 47.1
ATR0071G007 Amborella trichopoda HOM05D000246 ORTHO05D005396 1.6e-09 65.9 69 47.8
Ca_00062_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005396 1.6e-09 65.9 70 47.1
Thhalv10023226m.g Eutrema salsugineum HOM05D000246 ORTHO05D005396 1.6e-09 65.9 75 44.0
FAN04G2409 Fragaria x ananassa HOM05D000246 ORTHO05D005396 1.6e-09 65.9 70 47.1
FAN13G0468 Fragaria x ananassa HOM05D000246 ORTHO05D005396 1.6e-09 65.9 70 47.1
Os04g0433800 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005396 1.6e-09 65.9 75 44.0
SEGI_22596 Sequoiadendron giganteum HOM05D000246 ORTHO05D005396 1.6e-09 65.9 69 43.5
RcHm_v2.0_Chr2g0101731 Rosa chinensis HOM05D000246 ORTHO05D015415 2.8e-09 65.1 67 50.7
RcHm_v2.0_Chr4g0402091 Rosa chinensis HOM05D002478 ORTHO05D015415 2.8e-09 65.1 67 50.7
CDE04G3613 Ceratophyllum demersum HOM05D000246 ORTHO05D005396 3.6e-09 64.7 75 42.7
CDE08G1044 Ceratophyllum demersum HOM05D000246 ORTHO05D005396 3.6e-09 64.7 75 42.7
TPR.G40202 Trifolium pratense HOM05D000246 ORTHO05D015415 3.6e-09 64.7 65 49.2
MD07G1056800 Malus domestica HOM05D000246 ORTHO05D005396 4.7e-09 64.3 72 47.2
RcHm_v2.0_Chr7g0221231 Rosa chinensis HOM05D000246 ORTHO05D005396 4.7e-09 64.3 65 49.2
Mapoly0070s0053 Marchantia polymorpha HOM05D000246 ORTHO05D005396 6.2e-09 63.9 65 46.2
SEGI_30936 Sequoiadendron giganteum HOM05D000246 ORTHO05D015415 8.0e-09 63.5 69 43.5
unitig_8.g4526 Utricularia gibba HOM05D000246 ORTHO05D005396 1.0e-08 63.2 66 42.4
Aa31LG1G3940 Aethionema arabicum HOM05D000246 ORTHO05D005396 1.8e-08 62.4 75 42.7
HPP92_004440 Vanilla planifolia HOM05D000246 ORTHO05D005396 1.8e-08 62.4 70 41.4
Psat1g222120 Pisum sativum HOM05D000246 ORTHO05D005396 3.1e-08 61.6 75 41.3
Dinv24306 Davidia involucrata HOM05D000246 ORTHO05D005396 1.2e-07 59.7 96 36.5
MSTRG.16508 Avicennia marina HOM05D000246 ORTHO05D005396 1.5e-07 59.3 70 38.6
TPR.G23583 Trifolium pratense HOM05D000246 ORTHO05D005396 2.0e-07 58.9 71 45.1
PSO724G0359 Papaver somniferum HOM05D000246 ORTHO05D015415 2.6e-07 58.5 76 44.7
SHI16631 Sapria himalayana HOM05D000246 ORTHO05D005396 3.4e-07 58.2 53 52.8
SMO116G0385 Selaginella moellendorffii HOM05D000246 ORTHO05D005396 3.4e-07 58.2 66 40.9
PSO729G0088 Papaver somniferum HOM05D000246 ORTHO05D015415 1.3e-06 56.2 75 42.7
AagrBONN_evm.TU.Sc2ySwM_344.3354 Anthoceros agrestis HOM05D000246 ORTHO05D005396 2.9e-06 55.1 70 40.0


User provided reference genes

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