Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 0.0e+00 1111.7 567 100.0
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 9.0e-259 896.7 570 80.4
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 6.4e-257 890.6 569 80.1
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 2.5e-253 878.6 567 80.1
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 3.3e-253 878.2 573 79.1
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 7.3e-253 877.1 569 79.1
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.1e-252 875.5 576 78.3
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 4.8e-252 874.4 568 79.0
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 2.4e-251 872.1 569 80.0
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.2e-250 869.8 570 78.8
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 2.6e-250 868.6 568 79.0
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 1.3e-249 866.3 569 77.9
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 1.7e-249 865.9 568 78.5
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 1.7e-249 865.9 569 78.2
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 3.8e-249 864.8 579 77.2
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 3.8e-249 864.8 569 80.7
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 1.1e-248 863.2 571 78.3
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.4e-248 862.8 569 78.0
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 1.6e-247 859.4 570 78.1
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 2.1e-247 859.0 568 78.3
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 2.1e-247 859.0 569 80.0
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 2.7e-247 858.6 570 77.4
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 6.0e-247 857.4 569 78.0
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 5.1e-246 854.4 572 77.4
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 3.3e-245 851.7 571 77.8
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 3.3e-245 851.7 588 76.4
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 9.6e-245 850.1 570 76.8
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 1.6e-244 849.4 568 77.5
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 2.1e-244 849.0 573 77.3
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 4.8e-244 847.8 569 79.3
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 6.2e-244 847.4 569 77.3
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 3.1e-243 845.1 569 78.7
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 4.0e-243 844.7 570 79.1
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 5.3e-243 844.3 570 79.1
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 1.2e-242 843.2 582 76.1
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 2.0e-242 842.4 571 76.2
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 3.4e-242 841.6 582 75.9
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 3.4e-242 841.6 573 77.0
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 3.4e-242 841.6 631 71.6
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 4.5e-242 841.3 576 76.2
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 9.9e-242 840.1 570 76.3
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 9.9e-242 840.1 571 76.0
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 1.3e-241 839.7 573 75.9
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 3.2e-240 835.1 574 76.8
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 4.2e-240 834.7 550 78.0
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 1.6e-239 832.8 566 74.6
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 2.7e-239 832.0 572 77.4
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 3.5e-239 831.6 570 76.3
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 1.0e-238 830.1 589 74.4
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 3.0e-238 828.6 569 76.3
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 3.9e-238 828.2 566 75.4
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 8.7e-238 827.0 571 74.4
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 5.6e-237 824.3 569 76.1
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 7.4e-237 823.9 574 75.6
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 1.3e-236 823.2 575 75.3
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 1.6e-236 822.8 568 75.4
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 2.1e-236 822.4 578 74.6
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 4.0e-235 818.1 529 79.6
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 1.2e-234 816.6 569 75.7
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 2.9e-233 812.0 568 74.3
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 2.1e-231 805.8 573 74.2
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 1.0e-230 803.5 578 74.4
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 1.8e-230 802.7 572 72.0
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.5e-229 799.7 576 73.4
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.9e-229 799.3 574 71.8
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 3.3e-229 798.5 735 61.1
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 5.7e-229 797.7 574 71.8
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 5.7e-229 797.7 574 71.8
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 7.4e-229 797.3 574 71.8
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 7.7e-226 787.3 571 72.3
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 3.8e-225 785.0 576 71.5
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.4e-224 783.1 601 68.6
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 2.1e-223 779.2 560 72.7
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 1.4e-222 776.5 553 73.1
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 2.3e-222 775.8 673 64.5
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 8.8e-222 773.9 576 71.2
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.4e-219 766.5 562 71.5
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 4.1e-219 765.0 566 72.1
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 6.9e-219 764.2 582 71.6
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 7.7e-218 760.8 589 69.6
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 1.3e-217 760.0 567 70.5
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 3.8e-217 758.4 570 69.8
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 3.2e-216 755.4 587 69.3
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 1.2e-215 753.4 567 69.8
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 1.6e-215 753.1 504 76.0
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 2.7e-215 752.3 518 75.9
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 6.1e-215 751.1 569 68.4
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 5.7e-213 744.6 572 70.8
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 2.2e-212 742.7 558 71.0
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 1.8e-211 739.6 590 66.1
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 1.8e-211 739.6 569 67.3
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 7.0e-211 737.6 516 74.6
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 2.6e-210 735.7 580 67.6
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 6.1e-207 724.5 576 67.5
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 2.0e-205 719.5 561 68.6
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 9.7e-205 717.2 580 65.3
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 8.2e-204 714.1 563 67.3
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 8.2e-204 714.1 563 67.3
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 8.2e-204 714.1 563 67.3
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 1.4e-203 713.4 563 66.4
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 3.1e-203 712.2 561 68.1
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 1.0e-201 707.2 563 66.1
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 4.2e-200 701.8 571 68.8
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 1.0e-198 697.2 560 65.9
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 3.0e-198 695.7 569 66.4
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 9.1e-187 657.5 567 63.7
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 8.6e-185 651.0 488 68.9
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 7.8e-178 627.9 416 76.4
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 9.5e-176 620.9 591 60.4
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 1.4e-147 527.3 383 71.3
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 7.3e-136 488.4 500 54.6
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 7.3e-136 488.4 500 54.6
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 7.3e-136 488.4 500 54.6
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 8.1e-135 485.0 583 50.4
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 2.9e-132 476.5 596 50.8
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 6.7e-129 465.3 480 57.3
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 6.2e-127 458.8 349 69.1
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 9.3e-123 444.9 261 82.0
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 3.1e-86 323.6 243 72.0
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 4.2e-83 313.2 352 53.1
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 9.4e-83 312.0 333 57.4
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 2.7e-82 310.5 195 79.0
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 1.8e-81 307.8 238 68.9
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 3.0e-81 307.0 552 42.2
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 1.2e-77 295.0 161 89.4
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 6.1e-74 282.7 163 85.3
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 4.9e-71 273.1 194 73.7
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 1.1e-70 271.9 165 85.5
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 8.0e-66 255.8 272 52.6
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 9.8e-64 248.8 423 40.0
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 1.5e-56 224.9 142 77.5
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 7.8e-53 212.6 169 69.8
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 3.3e-51 207.2 413 38.7
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.1e-49 202.2 134 74.6
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 1.5e-48 198.4 179 62.0
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 5.6e-43 179.9 114 78.9
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 3.1e-41 174.1 600 30.0
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 5.8e-40 169.9 122 78.7
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 1.7e-39 168.3 146 63.7
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 8.6e-36 156.0 154 57.8
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 1.3e-28 132.1 76 84.2
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 1.1e-25 122.5 156 47.4
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 2.6e-24 117.9 83 69.9
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 4.9e-23 113.6 78 70.5
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 6.4e-23 113.2 121 52.9
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 7.1e-22 109.8 58 93.1
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 8.1e-18 96.3 183 35.5
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.4e-17 94.7 67 77.6
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 4.0e-17 94.0 70 74.3
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 3.4e-16 90.9 68 72.1
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 1.1e-14 85.9 92 51.1
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 3.2e-14 84.3 150 36.0
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.0e-12 79.3 58 79.3
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 2.3e-12 78.2 87 44.8
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 1.2e-08 65.9 50 76.0
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 1.3e-07 62.4 63 50.8
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 4.9e-07 60.5 63 49.2
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 4.9e-07 60.5 65 60.0
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 3.2e-06 57.8 36 83.3


User provided reference genes

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