Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 1.4e-232 809.3 417 100.0
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 2.5e-205 718.8 414 88.6
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 1.6e-204 716.1 414 87.9
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 1.9e-202 709.1 414 87.0
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 7.4e-202 707.2 414 85.7
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 3.8e-198 694.9 414 86.2
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 1.0e-195 686.8 411 84.2
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 1.5e-194 682.9 411 84.2
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 2.0e-194 682.6 417 83.2
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 2.5e-194 682.2 414 83.1
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 2.5e-194 682.2 409 84.4
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 2.5e-194 682.2 410 84.1
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.3e-194 681.8 417 83.5
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 3.3e-194 681.8 411 84.2
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 5.7e-194 681.0 416 83.7
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 9.7e-194 680.2 409 83.9
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 9.7e-194 680.2 417 83.0
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 1.7e-193 679.5 411 83.2
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 1.7e-193 679.5 409 84.1
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 2.2e-193 679.1 411 83.2
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.8e-193 678.7 411 84.2
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 4.8e-193 677.9 411 83.5
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 1.4e-192 676.4 415 82.9
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 1.2e-191 673.3 410 82.9
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 1.2e-191 673.3 411 82.5
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 2.0e-191 672.5 411 82.2
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 2.0e-191 672.5 411 82.5
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 2.6e-191 672.2 411 82.2
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 3.4e-191 671.8 411 82.2
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 5.9e-191 671.0 411 82.7
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 5.9e-191 671.0 417 83.0
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 5.9e-191 671.0 429 80.7
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 1.0e-190 670.2 413 82.8
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 1.7e-190 669.5 442 78.1
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.8e-190 668.3 411 81.3
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 5.0e-190 667.9 411 81.0
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 6.5e-190 667.5 411 81.3
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 6.5e-190 667.5 411 82.0
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.4e-189 666.4 411 81.3
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 3.2e-189 665.2 411 82.7
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 3.2e-189 665.2 411 82.7
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 4.2e-189 664.8 411 81.8
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 5.5e-189 664.5 411 82.5
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 5.5e-189 664.5 422 80.6
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 7.2e-189 664.1 411 82.5
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 9.4e-189 663.7 411 81.8
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 2.1e-188 662.5 414 80.9
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 2.1e-188 662.5 411 81.3
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 4.7e-188 661.4 411 81.0
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.0e-187 660.2 411 81.0
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.4e-187 659.8 409 80.9
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 3.0e-187 658.7 409 80.7
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 3.0e-187 658.7 411 80.0
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 5.1e-187 657.9 419 80.7
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 8.8e-187 657.1 414 80.9
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 1.5e-186 656.4 411 80.0
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 1.5e-186 656.4 411 80.3
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 3.3e-186 655.2 411 80.0
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 3.3e-186 655.2 411 80.3
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 3.3e-186 655.2 411 80.8
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 7.4e-186 654.1 411 80.3
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 1.3e-185 653.3 411 80.0
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 1.7e-185 652.9 411 79.6
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 1.7e-185 652.9 411 80.0
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 2.2e-185 652.5 411 79.6
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 2.2e-185 652.5 411 79.6
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 2.2e-185 652.5 411 80.0
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 3.7e-185 651.7 411 79.8
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 1.4e-184 649.8 415 79.8
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 3.1e-184 648.7 411 79.6
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 5.9e-183 644.4 411 79.3
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 2.2e-182 642.5 410 79.3
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 2.5e-181 639.0 411 77.6
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 2.5e-181 639.0 423 77.3
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 2.5e-181 639.0 423 77.3
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 2.5e-181 639.0 411 78.6
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 4.2e-181 638.3 423 77.1
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 9.4e-181 637.1 411 78.1
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 2.0e-178 629.4 412 78.4
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 1.3e-177 626.7 407 79.1
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.8e-177 625.5 411 77.6
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.3e-174 616.7 408 77.2
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 2.9e-174 615.5 435 73.6
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 4.2e-173 611.7 411 75.7
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 4.4e-170 601.7 418 73.0
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 3.7e-169 598.6 414 69.6
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 4.8e-169 598.2 412 73.1
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 8.3e-169 597.4 413 74.3
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 8.3e-169 597.4 412 73.3
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 3.5e-167 592.0 367 81.5
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.0e-166 590.5 371 80.3
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.7e-166 589.7 403 75.9
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 1.4e-160 570.1 411 69.3
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 3.1e-160 568.9 410 72.7
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 2.0e-159 566.2 411 71.3
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 2.9e-158 562.4 409 72.4
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 3.6e-156 555.4 368 78.0
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 1.2e-154 550.4 323 85.8
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 6.4e-153 544.7 403 66.5
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 9.2e-152 540.8 415 68.2
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.5e-146 523.5 398 64.8
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 2.6e-146 522.7 482 61.6
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 4.6e-143 511.9 408 67.2
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 1.2e-140 503.8 405 59.5
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 3.1e-139 499.2 406 60.3
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 4.6e-135 485.3 303 78.9
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 7.8e-135 484.6 282 85.8
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.1e-134 481.9 282 85.5
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 4.1e-128 462.2 257 90.3
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 9.2e-128 461.1 293 79.5
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 1.2e-114 417.5 256 79.7
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 5.8e-114 415.2 314 68.2
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 2.8e-108 396.4 313 66.8
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.4e-107 394.0 288 69.1
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 2.1e-100 370.2 292 69.2
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.1e-99 367.9 284 66.9
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 6.9e-99 365.2 415 47.7
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 2.5e-85 320.1 200 83.0
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 5.7e-85 318.9 191 84.3
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.7e-79 300.1 238 64.3
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.2e-74 284.6 173 83.2
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 7.7e-74 282.0 182 76.9
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.7e-71 272.7 199 67.3
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 8.5e-65 251.9 400 37.0
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.6e-63 247.7 204 64.2
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.5e-58 229.9 131 86.3
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.3e-57 228.0 405 33.6
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 6.5e-57 225.7 318 38.4
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 8.8e-54 215.3 217 55.3
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.5e-49 199.1 126 77.0
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 4.2e-48 196.4 121 76.9
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.2e-46 189.5 197 57.9
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.3e-41 174.9 157 63.1
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 5.6e-40 169.5 102 79.4
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.0e-38 163.3 174 56.3
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 3.5e-34 150.2 411 30.2
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.3e-33 147.5 111 66.7
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.5e-32 144.1 83 81.9
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.1e-31 141.0 80 83.8
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 4.0e-30 136.7 107 59.8
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 3.2e-27 127.1 115 62.6
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 5.4e-19 99.8 99 58.6
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 7.1e-19 99.4 153 40.5
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 6.0e-18 96.3 51 90.2
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 1.1e-16 92.0 128 48.4
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 3.3e-16 90.5 143 42.7
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 3.1e-14 84.0 146 41.1
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 2.6e-13 80.9 59 76.3
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.2e-12 77.8 50 76.0
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 3.9e-09 67.0 40 82.5
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.6e-09 66.2 70 55.7
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.9e-08 64.7 57 59.6
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 4.3e-08 63.5 101 41.6


User provided reference genes

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