Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 0.0e+00 1522.7 803 100.0
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 5.8e-288 994.2 797 65.1
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 8.2e-282 973.8 783 64.5
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 1.2e-280 969.9 783 64.2
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 5.9e-280 967.6 778 64.8
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 2.9e-279 965.3 791 65.0
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 5.5e-278 961.1 800 64.2
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 6.1e-277 957.6 768 65.6
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 1.1e-275 953.4 772 63.1
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 4.3e-275 951.4 781 64.8
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 1.6e-274 949.5 781 64.7
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 3.7e-274 948.3 800 63.9
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 9.0e-273 943.7 765 65.6
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 2.0e-272 942.6 791 62.6
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 1.0e-271 940.3 773 63.0
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 1.0e-271 940.3 789 62.0
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 8.5e-271 937.2 802 62.0
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 2.5e-270 935.6 782 62.8
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 1.2e-269 933.3 770 63.5
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 1.8e-268 929.5 791 61.7
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 3.0e-268 928.7 798 60.8
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 5.1e-268 927.9 782 63.0
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 6.7e-268 927.5 784 62.1
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 1.5e-267 926.4 794 61.6
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 3.3e-267 925.2 781 62.5
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 5.7e-267 924.5 794 62.2
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 1.7e-266 922.9 793 61.4
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 1.4e-265 919.8 780 62.7
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 5.3e-265 917.9 772 62.3
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 3.4e-264 915.2 788 61.0
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 3.4e-264 915.2 787 60.5
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 1.0e-263 913.7 776 60.3
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 1.3e-263 913.3 800 61.0
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 5.0e-263 911.4 780 59.7
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.1e-262 910.2 781 60.6
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.1e-262 910.2 781 60.6
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 3.2e-262 908.7 797 60.9
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 2.3e-260 902.5 778 61.8
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 3.9e-260 901.7 792 60.2
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 5.1e-260 901.4 775 61.4
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 2.0e-259 899.4 779 60.7
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 3.3e-259 898.7 811 59.1
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 4.4e-259 898.3 788 59.9
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 2.8e-258 895.6 788 60.3
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 9.1e-257 890.6 788 61.3
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.9e-256 887.9 788 60.4
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 1.7e-255 886.3 786 60.3
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 5.0e-255 884.8 782 59.7
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.5e-254 883.2 788 60.7
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 2.5e-254 882.5 782 59.3
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 1.2e-253 880.2 803 58.7
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 2.1e-253 879.4 803 57.9
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 6.7e-252 874.4 776 58.8
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.5e-251 873.2 793 59.6
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 1.5e-251 873.2 783 59.5
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 2.6e-251 872.5 796 57.4
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 4.4e-251 871.7 770 60.5
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 5.7e-251 871.3 779 59.7
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 1.3e-250 870.2 815 60.5
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 3.7e-250 868.6 779 59.4
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 3.7e-250 868.6 801 58.4
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 8.2e-250 867.5 778 59.6
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 3.1e-249 865.5 787 57.8
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 7.0e-249 864.4 773 59.1
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 3.5e-248 862.1 797 58.1
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 4.5e-248 861.7 992 49.6
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 1.6e-240 836.6 773 56.5
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 1.7e-239 833.2 754 60.2
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 1.2e-235 820.5 779 55.7
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 2.0e-235 819.7 777 56.2
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 4.4e-235 818.5 789 55.5
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 6.3e-234 814.7 777 55.3
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 1.7e-231 806.6 778 54.5
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.9e-230 803.1 763 54.9
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 3.3e-230 802.4 821 53.0
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 1.2e-229 800.4 770 55.3
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 4.7e-229 798.5 769 56.0
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 4.0e-228 795.4 775 55.9
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 2.0e-227 793.1 784 54.6
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 5.7e-227 791.6 785 53.4
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 8.3e-226 787.7 745 58.3
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 4.1e-225 785.4 954 47.7
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 7.0e-225 784.6 771 53.6
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 2.0e-224 783.1 774 54.4
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 2.7e-224 782.7 774 54.4
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 4.6e-224 781.9 676 62.4
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 1.4e-220 770.4 780 52.8
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 3.2e-217 759.2 790 51.5
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 4.1e-217 758.8 878 48.7
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 3.5e-216 755.7 685 59.1
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 3.3e-214 749.2 779 54.9
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 4.9e-210 735.3 645 60.2
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 8.6e-207 724.5 736 52.0
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 4.3e-206 722.2 794 50.8
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 1.5e-203 713.8 785 50.7
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 6.0e-184 648.7 544 62.5
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 1.4e-180 637.5 646 55.9
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 4.6e-168 595.9 636 54.6
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 3.0e-167 593.2 759 45.3
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 8.7e-167 591.7 605 54.9
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 1.1e-161 574.7 764 44.2
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 5.5e-161 572.4 798 42.0
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 3.0e-151 540.0 774 41.5
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 5.9e-139 499.2 426 61.0
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 4.5e-123 446.4 436 53.9
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.4e-116 424.1 670 39.7
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 7.3e-105 386.0 480 44.6
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 1.4e-103 381.7 763 35.5
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 8.9e-103 379.0 470 46.6
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.4e-102 376.7 484 44.2
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 2.1e-91 341.3 320 57.2
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 6.8e-87 326.2 331 57.4
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 8.1e-80 302.8 297 58.2
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 1.7e-77 295.0 1019 27.0
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 8.4e-77 292.7 268 59.3
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 8.1e-72 276.2 198 65.7
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 8.1e-64 249.6 283 52.7
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 2.5e-57 228.0 160 68.1
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 1.6e-56 225.3 230 56.1
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 5.3e-55 220.3 297 39.7
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 1.5e-54 218.8 410 36.3
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 1.5e-49 202.2 159 59.7
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 6.3e-48 196.8 124 75.8
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 2.4e-47 194.9 788 25.9
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 3.1e-47 194.5 176 55.7
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 1.8e-34 152.1 174 52.9
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 7.2e-28 130.2 290 36.2
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.1e-25 122.9 280 31.4
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.1e-23 114.4 102 57.8
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 1.0e-21 109.8 95 64.2
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 7.2e-20 103.6 191 33.0
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 8.0e-19 100.1 124 46.8
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 3.3e-17 94.7 64 71.9
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 5.0e-13 80.9 169 32.5
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 1.4e-10 72.8 64 48.4
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 5.2e-10 70.9 155 29.0
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 6.8e-10 70.5 106 34.0
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 3.7e-08 64.7 38 68.4
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 2.4e-07 62.0 184 29.3
SHI12859 Sapria himalayana HOM05D005074 ORTHO05D023363 4.1e-07 61.2 48 50.0
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 5.9e-06 57.4 69 44.9


User provided reference genes

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