Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 0.0e+00 2337.4 1173 100.0
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 0.0e+00 1135.6 1178 54.6
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 0.0e+00 1081.2 1200 52.1
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 3.2e-311 1072.0 1163 51.5
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 1.2e-310 1070.1 1156 53.6
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 2.8e-307 1058.9 1172 51.6
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 7.7e-305 1050.8 1185 51.1
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 1.7e-304 1049.7 1189 50.2
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 1.8e-301 1039.6 1171 50.8
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 2.6e-300 1035.8 1196 50.6
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 1.7e-296 1023.1 1185 49.9
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 3.2e-295 1018.8 1149 50.7
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 1.4e-290 1003.4 1159 50.6
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 9.1e-290 1000.7 1223 48.7
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 1.6e-289 1000.0 1180 50.5
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 8.0e-286 987.6 1183 49.0
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 1.4e-285 986.9 1230 47.1
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 1.5e-284 983.4 1193 48.4
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 7.5e-284 981.1 1175 49.5
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 9.8e-284 980.7 1189 49.4
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 2.9e-280 969.1 1168 48.3
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 1.5e-279 966.8 1162 48.5
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 1.9e-279 966.5 1203 48.3
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 3.2e-279 965.7 1184 47.0
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 1.8e-277 959.9 1178 48.8
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 4.0e-277 958.7 1053 51.9
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 1.2e-276 957.2 1195 48.9
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 5.4e-274 948.3 1186 48.7
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 3.8e-272 942.2 1195 47.5
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 3.0e-269 932.6 1173 46.9
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 3.5e-265 919.1 1192 45.9
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 4.3e-263 912.1 1198 45.4
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 2.8e-262 909.4 1175 47.1
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 4.0e-261 905.6 1041 49.2
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 8.9e-261 904.4 1167 46.5
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 7.5e-260 901.4 1172 45.7
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 6.0e-257 891.7 1173 46.1
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 5.0e-256 888.6 1257 44.2
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 6.6e-256 888.3 1123 47.7
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 1.9e-255 886.7 1170 45.6
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 1.6e-254 883.6 994 51.2
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 3.6e-254 882.5 1168 46.3
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 1.4e-253 880.6 996 51.7
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 6.8e-253 878.2 1162 45.0
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 1.2e-252 877.5 1252 43.6
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 5.8e-252 875.2 1270 43.9
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 1.3e-251 874.0 1056 48.7
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 6.4e-251 871.7 1005 49.5
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.9e-250 870.2 1249 43.2
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 4.6e-249 865.5 1164 44.4
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 6.0e-249 865.1 1194 44.3
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 3.0e-248 862.8 1205 43.7
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 8.6e-248 861.3 1172 44.9
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 1.1e-247 860.9 1199 44.5
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 5.6e-247 858.6 1059 46.9
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.2e-246 857.4 1173 44.8
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 1.6e-246 857.1 1207 43.6
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.1e-246 856.7 1169 44.7
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 1.1e-245 854.4 1245 44.2
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 1.8e-245 853.6 1216 42.9
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 5.8e-244 848.6 1247 42.0
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 1.1e-242 844.3 1169 46.2
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 1.1e-242 844.3 1169 46.2
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 3.5e-241 839.3 1287 41.1
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 8.6e-240 834.7 1184 43.8
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 1.5e-239 833.9 990 48.8
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 7.3e-239 831.6 1165 44.2
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 8.1e-238 828.2 1175 44.3
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 2.4e-237 826.6 1043 47.6
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 5.2e-237 825.5 1043 47.7
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 9.9e-236 821.2 1193 43.8
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 9.9e-236 821.2 1256 42.2
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 2.7e-233 813.1 1168 43.6
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 7.8e-233 811.6 991 48.8
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 1.0e-232 811.2 1164 43.1
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 1.3e-232 810.8 1168 42.6
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 4.3e-231 805.8 1169 43.5
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.9e-227 793.1 1240 41.4
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 7.1e-226 788.5 1225 41.4
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 3.0e-224 783.1 1194 42.9
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 3.0e-224 783.1 1166 43.5
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.1e-223 781.2 633 62.7
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 2.1e-222 776.9 1258 41.1
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 3.4e-220 769.6 1178 42.1
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 5.8e-220 768.8 1114 44.2
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 1.7e-219 767.3 1162 42.2
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 3.2e-218 763.1 1030 45.2
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 4.2e-218 762.7 1162 42.3
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 9.3e-218 761.5 1036 45.2
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 7.9e-217 758.4 1035 44.3
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 2.5e-215 753.4 1060 43.8
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 1.6e-214 750.7 1022 45.1
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 1.4e-205 721.1 985 43.8
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 1.5e-204 717.6 1094 41.6
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 6.9e-197 692.2 623 58.4
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 2.0e-196 690.6 979 43.5
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 4.5e-196 689.5 668 53.6
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 1.7e-195 687.6 846 48.1
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 2.9e-195 686.8 881 44.9
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 3.7e-190 669.8 1028 42.1
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 4.5e-188 662.9 946 45.1
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 2.8e-182 643.7 990 41.8
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 2.4e-181 640.6 664 53.8
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 3.1e-181 640.2 630 52.5
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 4.2e-178 629.8 830 45.7
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 9.4e-170 602.1 1164 36.9
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.8e-166 590.5 793 45.4
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 5.0e-163 579.7 1038 37.8
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 8.0e-161 572.4 643 50.1
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 2.0e-151 541.2 497 58.4
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 2.6e-135 487.6 691 44.0
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.4e-133 481.1 744 42.2
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.2e-132 478.8 429 58.5
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 2.0e-111 408.3 658 40.0
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 4.2e-109 400.6 1069 31.2
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 1.0e-107 396.0 1088 32.1
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 7.6e-103 379.8 317 60.9
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 4.2e-101 374.0 327 60.6
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 3.0e-91 341.3 798 33.7
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 9.0e-88 329.7 955 31.1
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 2.0e-87 328.6 955 31.0
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 2.5e-85 321.6 294 59.2
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 4.3e-82 310.8 313 54.0
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 7.2e-77 293.5 257 57.2
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 3.7e-65 254.6 409 38.9
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 5.9e-63 247.3 356 41.0
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.5e-45 189.5 495 33.9
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 6.8e-43 180.6 601 30.0
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 2.9e-33 148.7 268 35.8
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 5.2e-27 127.9 528 24.6
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 7.8e-23 114.0 227 33.5
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 1.1e-21 110.2 284 28.9
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 9.9e-18 97.1 304 31.6
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 4.0e-11 75.1 57 64.9
SHI12870 Sapria himalayana HOM05D005064 ORTHO05D006611 4.9e-09 68.2 116 37.9
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 1.6e-07 63.2 119 37.8
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 3.0e-06 58.9 81 43.2


User provided reference genes

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