Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g11670 Coffea canephora HOM05D006561 ORTHO05D008097 5.3e-139 497.7 250 100.0
Rhsim06G0203200 Rhododendron simsii HOM05D006561 ORTHO05D008097 1.5e-88 330.1 248 64.5
MSTRG.15242 Avicennia marina HOM05D006561 ORTHO05D008097 2.5e-88 329.3 248 66.5
Migut.M00775 Erythranthe guttata HOM05D006561 ORTHO05D008097 2.1e-87 326.2 248 67.3
Hma1.2p1_0416F.1_g148410 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 3.6e-87 325.5 244 64.8
Dinv14944 Davidia involucrata HOM05D006561 ORTHO05D008097 5.2e-86 321.6 248 64.5
Oeu005397.1 Olea europaea HOM05D006561 ORTHO05D008097 5.2e-86 321.6 248 64.9
Cfa020616 Carpinus fangiana HOM05D006561 ORTHO05D008097 1.4e-83 313.5 248 62.9
CiPaw.11G166900 Carya illinoinensis HOM05D006561 ORTHO05D008097 3.2e-83 312.4 248 64.5
TAR627G0129 Trochodendron aralioides HOM05D006561 ORTHO05D008097 9.3e-83 310.8 252 61.9
CSS0025681 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 1.2e-82 310.5 244 62.3
CSS0029173 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 1.2e-82 310.5 244 62.3
Haze_09389 Corylus avellana HOM05D006561 ORTHO05D008097 2.7e-82 309.3 248 62.1
Nitab4.5_0002019g0020 Nicotiana tabacum HOM05D006561 ORTHO05D008097 7.8e-82 307.8 248 62.1
Nitab4.5_0000246g0010 Nicotiana tabacum HOM05D006561 ORTHO05D008097 6.6e-81 304.7 248 61.3
Aqoxy1G02303 Aquilegia oxysepala HOM05D006561 ORTHO05D008097 1.1e-80 303.9 233 61.8
PGSC0003DMG401012439 Solanum tuberosum HOM05D006561 ORTHO05D008097 1.5e-80 303.5 248 60.5
Manes.03G104900 Manihot esculenta HOM05D006561 ORTHO05D008097 2.5e-80 302.8 248 60.9
TWI38G0530 Tripterygium wilfordii HOM05D006561 ORTHO05D008097 2.5e-80 302.8 248 61.3
Gohir.D01G047500 Gossypium hirsutum HOM05D006561 ORTHO05D008097 4.8e-79 298.5 248 59.7
Gorai.002G067000 Gossypium raimondii HOM05D006561 ORTHO05D008097 4.8e-79 298.5 248 59.7
Gohir.A01G061000 Gossypium hirsutum HOM05D006561 ORTHO05D008097 6.2e-79 298.1 248 59.7
ClCG11G017750 Citrullus lanatus HOM05D006561 ORTHO05D008097 4.0e-78 295.4 248 59.3
Ciclev10009269m.g Citrus clementina HOM05D006561 ORTHO05D008097 5.3e-78 295.0 248 60.9
Thecc.07G098700 Theobroma cacao HOM05D006561 ORTHO05D008097 5.3e-78 295.0 267 55.4
Solyc07g062780.3 Solanum lycopersicum HOM05D006561 ORTHO05D008097 1.2e-77 293.9 249 59.4
Sopen07g031000 Solanum pennellii HOM05D006561 ORTHO05D008097 1.2e-77 293.9 249 59.8
unitig_747.g21579 Utricularia gibba HOM05D006561 ORTHO05D008097 1.2e-77 293.9 248 59.7
PSO675G8981 Papaver somniferum HOM05D006561 ORTHO05D008097 2.0e-77 293.1 248 55.6
Nn1g06395 Nelumbo nucifera HOM05D006561 ORTHO05D008097 2.6e-77 292.7 250 58.8
ECA234G0004 Erigeron canadensis HOM05D006561 ORTHO05D008097 5.8e-77 291.6 248 59.3
Potri.011G141200 Populus trichocarpa HOM05D006561 ORTHO05D008097 7.6e-77 291.2 252 61.1
Peaxi162Scf00069g01837 Petunia axillaris HOM05D006561 ORTHO05D008097 1.3e-76 290.4 239 61.5
Thhalv10021394m.g Eutrema salsugineum HOM05D006561 ORTHO05D008097 2.9e-76 289.3 248 59.3
Sed0026268 Sechium edule HOM05D006561 ORTHO05D008097 6.4e-76 288.1 248 58.1
Eucgr.F01175 Eucalyptus grandis HOM05D006561 ORTHO05D008097 1.1e-75 287.3 249 58.2
HanXRQChr10g0302511 Helianthus annuus HOM05D006561 ORTHO05D008097 1.1e-75 287.3 248 56.0
Lsat_1_v5_gn_5_127501 Lactuca sativa HOM05D006561 ORTHO05D008097 1.1e-75 287.3 248 59.3
Sp3g13360 Schrenkiella parvula HOM05D006561 ORTHO05D008097 1.6e-74 283.5 248 58.9
GSVIVG01014276001 Vitis vinifera HOM05D006561 ORTHO05D008097 1.6e-74 283.5 220 61.8
Atru.chr2.2390 Acer truncatum HOM05D006561 ORTHO05D008097 2.1e-74 283.1 248 55.6
Sabra11G0126800 Salix brachista HOM05D006561 ORTHO05D008097 2.1e-74 283.1 231 61.0
BcaB06g29539 Brassica carinata HOM05D006561 ORTHO05D008097 2.7e-74 282.7 248 57.3
CsaV3_4G033370 Cucumis sativus L. HOM05D006561 ORTHO05D008097 2.7e-74 282.7 244 57.0
THA.LOC104818093 Tarenaya hassleriana HOM05D006561 ORTHO05D008097 6.0e-74 281.6 249 59.0
vmacro11896 Vaccinium macrocarpon HOM05D006561 ORTHO05D008097 6.0e-74 281.6 318 47.5
A05p34300 Brassica napus HOM05D006561 ORTHO05D008097 7.9e-74 281.2 248 56.9
DCAR_017121 Daucus carota HOM05D006561 ORTHO05D008097 7.9e-74 281.2 240 55.4
RcHm_v2.0_Chr5g0032331 Rosa chinensis HOM05D006561 ORTHO05D008097 1.8e-73 280.0 252 56.3
C05p52080 Brassica napus HOM05D006561 ORTHO05D008097 2.3e-73 279.6 248 56.9
SGA_v2.0_scaffold34G13795 Striga asiatica HOM05D006561 ORTHO05D008097 3.0e-73 279.3 208 68.3
AT3G15150 Arabidopsis thaliana HOM05D006561 ORTHO05D008097 3.9e-73 278.9 248 58.1
BolC5t33893H Brassica oleracea HOM05D006561 ORTHO05D008097 8.7e-73 277.7 248 56.5
Cpa.g.sc80.2 Carica papaya HOM05D006561 ORTHO05D008097 8.7e-73 277.7 248 57.3
Sc16g0007290 Simmondsia chinensis HOM05D006561 ORTHO05D008097 8.7e-73 277.7 249 55.0
PGR083G2053 Punica granatum HOM05D006561 ORTHO05D008097 1.1e-72 277.3 240 55.8
Carub.0003s1480 Capsella rubella HOM05D006561 ORTHO05D008097 4.3e-72 275.4 239 57.7
BraA05t22251Z Brassica rapa HOM05D006561 ORTHO05D008097 9.6e-72 274.2 255 55.3
CAN.G162.30 Capsicum annuum HOM05D006561 ORTHO05D008097 9.6e-72 274.2 207 62.8
CARHR090130 Cardamine hirsuta HOM05D006561 ORTHO05D008097 9.6e-72 274.2 248 57.7
FvH4_3g19260 Fragaria vesca HOM05D006561 ORTHO05D008097 1.3e-71 273.9 252 55.2
MELO3C025617.2 Cucumis melo HOM05D006561 ORTHO05D008097 1.6e-71 273.5 252 54.4
MBI02_g25404_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 1.6e-71 273.5 248 56.5
Hund17607 Selenicereus undatus HOM05D006561 ORTHO05D008097 1.6e-71 273.5 248 56.0
FAN25G3572 Fragaria x ananassa HOM05D006561 ORTHO05D008097 3.6e-71 272.3 252 55.2
Lj8A153G39 Lonicera japonica HOM05D006561 ORTHO05D008097 4.8e-71 271.9 207 66.7
ATR0602G252 Amborella trichopoda HOM05D006561 ORTHO05D008097 8.1e-71 271.2 248 52.4
FAN11G0360 Fragaria x ananassa HOM05D006561 ORTHO05D008097 8.1e-71 271.2 252 54.8
EL10Ac4g08253 Beta vulgaris HOM05D006561 ORTHO05D008097 1.1e-70 270.8 248 55.6
AL3G27540 Arabidopsis lyrata HOM05D006561 ORTHO05D008097 3.1e-70 269.2 248 57.7
AUR62019482 Chenopodium quinoa HOM05D006561 ORTHO05D008097 5.3e-70 268.5 248 54.4
Duzib213G1006 Durio zibethinus HOM05D006561 ORTHO05D008097 9.0e-70 267.7 248 54.8
CANSAT35G0349 Cannabis sativa HOM05D006561 ORTHO05D008097 2.0e-69 266.5 248 54.4
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 9.9e-69 264.2 233 58.4
SHI39306 Sapria himalayana HOM05D006561 ORTHO05D008097 2.2e-68 263.1 233 54.5
SHI39545 Sapria himalayana HOM05D006561 ORTHO05D008097 2.2e-68 263.1 233 54.5
Prupe.4G174000 Prunus persica HOM05D006561 ORTHO05D008097 4.9e-68 261.9 210 61.4
AUR62036152 Chenopodium quinoa HOM05D006561 ORTHO05D008097 2.7e-66 256.1 248 52.0
Lalb_Chr25g0286221 Lupinus albus HOM05D006561 ORTHO05D008097 2.7e-66 256.1 248 52.8
Phvul.005G029100 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 6.0e-66 255.0 248 52.0
MD03G1235300 Malus domestica HOM05D006561 ORTHO05D008097 1.8e-65 253.4 232 56.0
VMungo1080G0633 Vigna mungo HOM05D006561 ORTHO05D008097 3.0e-65 252.7 248 51.2
Ca_03532_v3 Cicer arietinum L. HOM05D006561 ORTHO05D008097 2.5e-64 249.6 239 52.3
HPP92_024567 Vanilla planifolia HOM05D006561 ORTHO05D008097 3.3e-64 249.2 294 47.6
Glyma.13G273500 Glycine max HOM05D006561 ORTHO05D008097 4.3e-64 248.8 248 50.4
MBI02_g44100_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 2.8e-63 246.1 224 56.2
TPR.G7947 Trifolium pratense HOM05D006561 ORTHO05D008097 6.2e-63 245.0 239 49.8
Zm00001eb295840 Zea mays HOM05D006561 ORTHO05D008097 1.1e-62 244.2 238 51.3
arahy.Tifrunner.gnm1.ann1.RM2LTG Arachis hypogaea HOM05D006561 ORTHO05D008097 1.4e-62 243.8 234 51.7
Psat0s1402g0080 Pisum sativum HOM05D006561 ORTHO05D008097 1.8e-62 243.4 239 49.4
Medtr2g078640 Medicago truncatula HOM05D006561 ORTHO05D008097 2.9e-60 236.1 239 48.5
Phvul.005G075200 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 2.5e-59 233.0 206 53.9
Ah.06g184730 Amaranthus hybridus HOM05D006561 ORTHO05D008097 2.8e-55 219.5 246 49.2
MD11G1255800 Malus domestica HOM05D006561 ORTHO05D008097 4.8e-55 218.8 191 58.6
Lj3g0026269 Lotus japonicus HOM05D006561 ORTHO05D008097 4.5e-53 212.2 200 50.0
PSO541G4753 Papaver somniferum HOM05D006561 ORTHO05D008097 2.3e-49 199.9 184 56.0
arahy.Tifrunner.gnm1.ann1.YD6KBQ Arachis hypogaea HOM05D006561 ORTHO05D008097 7.4e-48 194.9 233 45.1
AagrBONN_evm.TU.Sc2ySwM_228.4556 Anthoceros agrestis HOM05D006561 ORTHO05D008097 2.2e-44 183.3 275 37.5
Actinidia12544 Actinidia chinensis HOM05D006561 ORTHO05D008097 1.9e-43 180.3 181 50.3
Actinidia07498 Actinidia chinensis HOM05D006561 ORTHO05D008097 1.5e-40 170.6 119 65.5
Mapoly0096s0048 Marchantia polymorpha HOM05D006561 ORTHO05D008097 7.4e-40 168.3 243 34.2
Pp3c22_18560 Physcomitrium patens HOM05D006561 ORTHO05D008097 9.7e-40 167.9 223 39.9
QL08p023698 Quercus lobata HOM05D006561 ORTHO05D008097 4.8e-39 165.6 116 65.5
Hma1.2p1_0416F.1_g148400 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 5.3e-38 162.2 137 60.6
CDE08G0579 Ceratophyllum demersum HOM05D006561 ORTHO05D008097 4.5e-37 159.1 149 54.4
CBR_g861 Chara braunii HOM05D006561 ORTHO05D008097 8.5e-36 154.8 231 32.9
FAN16G3278 Fragaria x ananassa HOM05D006561 ORTHO05D008097 1.2e-34 151.0 561 25.0
SMO143G0268 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 6.1e-34 148.7 222 37.8
Haze_09400 Corylus avellana HOM05D006561 ORTHO05D008097 5.2e-33 145.6 132 59.8
SMO265G0056 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 2.8e-31 139.8 180 41.1
QL08p023707 Quercus lobata HOM05D006561 ORTHO05D008097 1.4e-30 137.5 132 56.8
arahy.Tifrunner.gnm1.ann1.YKS4T6 Arachis hypogaea HOM05D006561 ORTHO05D008097 3.7e-23 112.8 133 43.6
Nn5g27383 Nelumbo nucifera HOM05D006561 ORTHO05D008097 3.7e-23 112.8 107 56.1
Pp3c23_10880 Physcomitrium patens HOM05D006561 ORTHO05D008097 1.7e-15 87.4 113 36.3
PRCOL_00000682 Prasinoderma coloniale HOM05D006561 ORTHO05D008097 7.7e-13 78.6 216 29.2
Pp3c20_12000 Physcomitrium patens HOM05D006561 ORTHO05D008097 2.9e-12 76.6 105 33.3
Mapoly0066s0041 Marchantia polymorpha HOM05D006561 ORTHO05D008097 8.6e-12 75.1 89 39.3
Haze_09398 Corylus avellana HOM05D006561 ORTHO05D008097 2.2e-07 60.5 59 59.3
Os05g0563500 Oryza sativa ssp. japonica HOM05D006561 ORTHO05D008097 3.7e-07 59.7 81 38.3
Nn2g11894 Nelumbo nucifera HOM05D001060 ORTHO05D008097 8.3e-07 58.5 115 35.7
Haze_09393 Corylus avellana HOM05D006561 ORTHO05D008097 1.1e-06 58.2 112 39.3
Pp3c23_16570 Physcomitrium patens HOM05D006561 ORTHO05D309072 1.1e-06 58.2 63 39.7


User provided reference genes

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