Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 4.7e-163 577.8 288 100.0
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 2.3e-130 469.2 285 82.5
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 5.2e-130 468.0 285 82.1
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 8.9e-130 467.2 286 82.5
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 7.5e-129 464.2 285 81.4
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 9.8e-129 463.8 286 81.5
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 5.4e-127 458.0 285 79.6
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 2.3e-125 452.6 284 80.6
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 3.0e-125 452.2 280 81.1
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 8.6e-125 450.7 305 76.7
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 3.3e-124 448.7 284 79.2
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 9.5e-124 447.2 286 78.7
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.2e-123 446.8 287 78.7
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 6.2e-123 444.5 285 78.9
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 1.1e-122 443.7 283 78.1
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 1.2e-121 440.3 284 77.1
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 4.9e-120 434.9 293 75.1
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 8.4e-120 434.1 271 79.3
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 7.1e-119 431.0 288 77.8
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 9.2e-119 430.6 305 72.5
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 4.6e-118 428.3 272 77.6
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 6.0e-118 427.9 273 79.5
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 1.8e-114 416.4 291 74.9
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 1.8e-114 416.4 276 78.3
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 3.4e-113 412.1 287 73.5
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 7.6e-113 411.0 291 73.5
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 1.7e-112 409.8 292 71.9
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 1.7e-112 409.8 290 72.8
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 2.9e-112 409.1 285 72.6
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 2.9e-112 409.1 290 72.8
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 2.9e-112 409.1 290 73.4
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 3.8e-112 408.7 296 70.3
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 1.1e-111 407.1 289 71.6
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 1.9e-111 406.4 291 71.8
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 3.2e-111 405.6 290 71.4
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 3.2e-111 405.6 283 72.4
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 3.2e-111 405.6 291 71.8
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 5.4e-111 404.8 283 71.7
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 9.3e-111 404.1 290 72.1
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 9.3e-111 404.1 290 72.4
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 1.6e-110 403.3 290 71.0
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 7.8e-110 401.0 297 69.0
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 7.8e-110 401.0 291 71.1
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 3.9e-109 398.7 287 69.7
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 1.9e-108 396.4 289 70.6
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 4.3e-108 395.2 287 70.0
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 4.3e-108 395.2 296 68.2
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 4.3e-108 395.2 291 68.0
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 5.6e-108 394.8 292 69.5
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 2.1e-107 392.9 293 68.6
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 3.6e-107 392.1 286 71.0
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 3.6e-107 392.1 289 69.2
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 1.4e-106 390.2 292 68.8
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 5.3e-106 388.3 283 69.6
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 5.3e-106 388.3 293 67.9
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 5.3e-106 388.3 290 69.7
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 6.9e-106 387.9 290 67.9
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 2.0e-105 386.3 290 68.3
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 7.6e-105 384.4 288 68.8
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 9.9e-105 384.0 294 67.0
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 1.3e-104 383.6 283 68.9
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 1.3e-104 383.6 273 72.9
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 1.3e-104 383.6 293 66.9
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 1.7e-104 383.3 293 67.2
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 2.9e-104 382.5 283 69.3
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 2.9e-104 382.5 285 68.8
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 3.8e-104 382.1 294 67.3
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 3.8e-104 382.1 297 65.7
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 6.4e-104 381.3 293 67.2
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 6.4e-104 381.3 290 66.9
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 6.4e-104 381.3 293 67.6
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 1.4e-103 380.2 284 67.6
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 1.4e-103 380.2 293 66.6
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 1.9e-103 379.8 280 68.2
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 2.4e-103 379.4 295 65.4
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 7.1e-103 377.9 274 71.5
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.1e-102 376.3 312 65.1
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 1.3e-101 373.6 327 62.7
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.1e-100 370.5 312 64.4
Lsat_1_v5_gn_3_69700 Lactuca sativa HOM05D005614 ORTHO05D006759 2.5e-100 369.4 233 81.5
Os02g0125800 Oryza sativa ssp. japonica HOM05D005614 ORTHO05D006759 7.4e-100 367.9 287 64.1
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 2.8e-99 365.9 302 65.2
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 3.1e-98 362.5 252 73.4
SalBow7G1071 Salvia bowleyana HOM05D005614 ORTHO05D006759 4.0e-98 362.1 255 74.9
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 1.3e-96 357.1 269 67.7
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.3e-96 357.1 250 73.2
Zm00001eb208710 Zea mays HOM05D005614 ORTHO05D006759 1.7e-96 356.7 279 64.2
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 1.1e-95 354.0 246 74.0
EL10Ac1g01047 Beta vulgaris HOM05D005614 ORTHO05D006759 3.2e-95 352.4 252 73.4
Hund27024 Selenicereus undatus HOM05D005614 ORTHO05D006759 7.9e-94 347.8 247 73.3
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 4.3e-92 342.0 290 63.4
Manes.02G162200 Manihot esculenta HOM05D005614 ORTHO05D006759 7.1e-87 324.7 242 70.2
Mapoly0044s0012 Marchantia polymorpha HOM05D005614 ORTHO05D006759 7.9e-86 321.2 296 53.7
Nitab4.5_0000003g0570 Nicotiana tabacum HOM05D005614 ORTHO05D006759 4.3e-84 315.5 230 74.8
Duzib093G1836 Durio zibethinus HOM05D005614 ORTHO05D006759 2.1e-83 313.2 270 64.1
Pp3c2_3680 Physcomitrium patens HOM05D005614 ORTHO05D006759 6.3e-83 311.6 293 54.9
Gohir.D05G236900 Gossypium hirsutum HOM05D005614 ORTHO05D006759 1.1e-82 310.8 201 76.1
SGA_v2.0_scaffold31G12915 Striga asiatica HOM05D005614 ORTHO05D006759 6.9e-82 308.1 207 79.2
MELO3C008774.2 Cucumis melo HOM05D005614 ORTHO05D006759 8.5e-80 301.2 199 76.9
Nn8g39974 Nelumbo nucifera HOM05D005614 ORTHO05D006759 3.0e-77 292.7 227 67.8
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 2.5e-76 289.7 250 63.2
Peaxi162Scf00689g00225 Petunia axillaris HOM05D005614 ORTHO05D006759 3.3e-76 289.3 212 73.1
Eucgr.G01112 Eucalyptus grandis HOM05D005614 ORTHO05D006759 7.7e-73 278.1 215 68.4
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 2.2e-72 276.6 222 64.9
Oeu022164.1 Olea europaea HOM05D005614 ORTHO05D006759 2.5e-71 273.1 149 84.6
vmacro00825 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 4.5e-65 252.3 227 64.3
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 1.7e-64 250.4 306 45.4
MBI03_g33030_MAGBIO Magnolia biondii HOM05D005614 ORTHO05D006759 2.9e-64 249.6 252 56.3
FAN24G3468 Fragaria x ananassa HOM05D005614 ORTHO05D006759 7.9e-62 241.5 382 44.0
Sabra05G0133300 Salix brachista HOM05D005614 ORTHO05D006759 3.0e-61 239.6 288 49.7
CDE06G0499 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 1.9e-55 220.3 189 63.5
Haze_00457 Corylus avellana HOM05D005614 ORTHO05D006759 1.4e-53 214.2 178 66.9
TPR.G24041 Trifolium pratense HOM05D005614 ORTHO05D006759 1.2e-49 201.1 175 64.0
TPR.G40310 Trifolium pratense HOM05D001808 ORTHO05D001747 9.4e-47 191.4 111 77.5
Lj4A622G15 Lonicera japonica HOM05D005614 ORTHO05D006759 8.0e-46 188.3 95 93.7
CDE12G0551 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 1.4e-45 187.6 105 83.8
Psat5g132360 Pisum sativum HOM05D005614 ORTHO05D006759 3.4e-44 183.0 164 62.2
TWI75G0111 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 2.2e-43 180.3 199 55.8
Psat5g132400 Pisum sativum HOM05D005614 ORTHO05D006759 7.0e-42 175.3 110 72.7
SEGI_11087 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 1.1e-39 167.9 96 81.2
Cre03.g172050 Chlamydomonas reinhardtii HOM05D005614 ORTHO05D006759 1.3e-35 154.5 285 35.4
Lj4A622G16 Lonicera japonica HOM05D005614 ORTHO05D006759 4.1e-34 149.4 120 70.0
SEGI_10746 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 1.0e-29 134.8 144 51.4
MCO01G384 Micromonas commoda HOM05D005614 ORTHO05D006759 5.2e-29 132.5 245 35.5
Haze_00458 Corylus avellana HOM05D005614 ORTHO05D006759 8.9e-29 131.7 75 80.0
Cfa025530 Carpinus fangiana HOM05D005614 ORTHO05D006759 6.4e-27 125.6 334 29.0
SMO358G0086 Selaginella moellendorffii HOM05D005614 ORTHO05D006759 1.2e-25 121.3 159 45.3
QL09p036498 Quercus lobata HOM05D005614 ORTHO05D006759 2.0e-25 120.6 70 82.9
PRCOL_00005856 Prasinoderma coloniale HOM05D005614 ORTHO05D006759 2.3e-24 117.1 138 42.0
CAN.G964.16 Capsicum annuum HOM05D005614 ORTHO05D006759 3.1e-21 106.7 95 65.3
RhsimUnG0102200 Rhododendron simsii HOM05D005614 ORTHO05D006759 8.1e-14 82.0 84 59.5
Rhsim02G0185400 Rhododendron simsii HOM05D005614 ORTHO05D006759 4.0e-13 79.7 81 60.5
Ca_31116_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 5.2e-13 79.3 94 55.3
Rhsim03G0117800 Rhododendron simsii HOM05D005614 ORTHO05D006759 7.8e-09 65.5 86 46.5
TPR.G32 Trifolium pratense HOM05D005614 ORTHO05D006759 7.8e-09 65.5 31 80.6
SalBow3G3353 Salvia bowleyana HOM05D005614 ORTHO05D006759 4.3e-07 59.7 67 53.7


User provided reference genes

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