Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 1.7e-249 865.5 432 100.0
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 2.0e-205 719.2 432 82.9
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 6.3e-204 714.1 432 83.3
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 8.2e-204 713.8 432 83.6
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 6.9e-203 710.7 438 82.4
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 9.1e-203 710.3 434 82.3
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 1.2e-202 709.9 434 82.0
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 2.0e-202 709.1 432 82.4
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 2.6e-202 708.8 396 88.1
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 4.5e-202 708.0 433 83.1
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 5.9e-202 707.6 432 82.9
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 1.0e-201 706.8 432 82.2
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 1.3e-201 706.4 432 82.4
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 1.7e-201 706.1 434 82.0
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 2.2e-201 705.7 396 87.9
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 2.9e-201 705.3 433 81.8
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 5.0e-201 704.5 434 81.8
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 8.5e-201 703.7 434 81.3
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 1.1e-200 703.4 396 86.4
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 1.1e-200 703.4 396 86.4
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 1.1e-200 703.4 432 82.2
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 1.1e-200 703.4 435 82.8
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 1.4e-200 703.0 434 81.8
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 1.4e-200 703.0 440 82.3
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 2.5e-200 702.2 433 81.8
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 3.2e-200 701.8 434 81.6
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 5.5e-200 701.0 432 81.2
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 9.4e-200 700.3 432 80.6
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 9.4e-200 700.3 432 81.0
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 2.7e-199 698.7 396 85.9
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 3.6e-199 698.4 435 81.4
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 3.6e-199 698.4 432 81.0
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 6.1e-199 697.6 432 81.5
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 6.1e-199 697.6 435 81.8
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 7.9e-199 697.2 432 81.7
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 1.0e-198 696.8 435 80.5
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 1.4e-198 696.4 432 81.2
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 1.4e-198 696.4 435 81.8
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 2.3e-198 695.7 396 86.6
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 3.0e-198 695.3 433 81.1
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 1.1e-197 693.3 432 80.3
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 1.1e-197 693.3 396 85.9
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 3.3e-197 691.8 401 84.8
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 9.7e-197 690.3 432 80.8
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 1.3e-196 689.9 433 79.9
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 1.7e-196 689.5 432 79.6
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 2.8e-196 688.7 432 79.6
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 4.8e-196 688.0 432 79.4
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 6.3e-196 687.6 432 80.1
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 8.2e-196 687.2 401 83.3
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 1.1e-195 686.8 394 85.3
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 1.1e-195 686.8 433 79.4
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 1.4e-195 686.4 386 85.5
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 1.4e-195 686.4 416 81.2
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 1.4e-195 686.4 432 80.3
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 1.8e-195 686.0 435 79.3
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 1.8e-195 686.0 423 79.7
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 3.1e-195 685.3 379 87.9
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 3.1e-195 685.3 434 79.7
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 5.3e-195 684.5 432 79.2
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 7.0e-195 684.1 432 80.3
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 9.1e-195 683.7 432 79.6
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 9.1e-195 683.7 396 84.8
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 1.5e-194 682.9 401 83.0
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 1.5e-194 682.9 397 84.4
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 2.6e-194 682.2 383 86.4
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 4.5e-194 681.4 432 80.8
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.0e-193 680.2 399 82.7
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 1.3e-193 679.9 396 84.8
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 1.7e-193 679.5 432 78.9
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 2.9e-193 678.7 435 78.6
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 6.5e-193 677.6 402 82.8
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 8.5e-193 677.2 409 82.2
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 1.4e-192 676.4 368 88.9
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 5.5e-192 674.5 433 79.9
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 5.5e-192 674.5 420 80.7
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 5.5e-192 674.5 388 83.2
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 2.7e-191 672.2 432 75.7
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 3.6e-191 671.8 368 89.1
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 1.0e-190 670.2 429 77.6
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 1.4e-190 669.8 432 76.6
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 1.8e-190 669.5 396 81.6
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 8.8e-190 667.2 432 76.2
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 2.0e-189 666.0 425 78.1
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 3.3e-189 665.2 432 75.7
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 7.4e-189 664.1 432 75.7
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 1.3e-188 663.3 385 83.9
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 1.4e-187 659.8 432 75.5
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 1.4e-187 659.8 444 74.1
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 1.8e-187 659.4 384 83.6
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 5.3e-187 657.9 432 75.2
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 5.3e-187 657.9 432 75.0
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 1.2e-186 656.8 399 82.2
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 1.2e-186 656.8 432 75.7
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 2.0e-186 656.0 432 75.7
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 2.6e-186 655.6 432 75.7
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 4.5e-186 654.8 432 76.9
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 1.3e-185 653.3 432 75.5
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 2.9e-185 652.1 433 75.3
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 6.5e-185 651.0 396 80.3
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 1.9e-184 649.4 437 78.0
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 7.2e-184 647.5 432 75.0
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 2.7e-183 645.6 442 74.4
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 2.7e-183 645.6 437 77.3
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 8.0e-183 644.0 376 83.2
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 3.1e-179 632.1 383 83.3
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 7.0e-179 630.9 496 66.3
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 1.2e-178 630.2 368 83.7
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 1.5e-176 623.2 409 74.3
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 3.2e-176 622.1 378 77.0
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 2.1e-175 619.4 392 76.3
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 9.8e-173 610.5 378 77.5
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 1.3e-169 600.1 409 71.1
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 5.0e-169 598.2 344 85.5
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 1.0e-158 563.9 409 67.7
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 2.3e-158 562.8 377 71.1
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 1.2e-154 550.4 337 77.7
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 1.0e-153 547.4 384 71.9
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 3.9e-153 545.4 343 80.2
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 2.5e-152 542.7 369 71.8
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 5.2e-150 535.0 360 73.6
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 1.2e-146 523.9 381 66.1
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 3.4e-141 505.8 288 84.7
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 9.6e-128 461.1 413 59.8
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 2.8e-127 459.5 299 75.9
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 1.6e-111 407.1 280 75.7
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 1.6e-111 407.1 267 77.5
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 1.7e-71 274.2 334 44.0
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 2.2e-71 273.9 358 42.5
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 1.1e-62 245.0 189 72.5
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 7.0e-54 215.7 118 87.3
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 1.9e-43 181.0 113 74.3
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 3.1e-33 147.1 84 81.0
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 8.3e-31 139.0 84 78.6
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 7.1e-30 136.0 84 76.2
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 1.9e-27 127.9 125 57.6
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 1.7e-23 114.8 57 89.5
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 1.4e-22 111.7 76 72.4
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 6.6e-20 102.8 71 71.8
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 4.4e-16 90.1 195 31.8
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 3.0e-12 77.4 70 64.3
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 1.8e-09 68.2 40 75.0
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 4.4e-08 63.5 66 51.5
BolC3t17202H Brassica oleracea HOM05D000003 ORTHO05D001498 2.4e-06 57.8 46 65.2


User provided reference genes

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