Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 1.3e-108 396.4 194 100.0
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 1.2e-98 363.2 194 88.1
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 5.1e-97 357.8 194 88.1
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 8.7e-97 357.1 194 86.1
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 4.3e-96 354.8 194 86.6
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 5.7e-96 354.4 194 86.1
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 7.4e-96 354.0 194 86.1
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 8.2e-95 350.5 194 85.1
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 1.1e-94 350.1 194 85.6
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 1.1e-94 350.1 194 85.1
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 1.1e-94 350.1 194 85.6
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 1.4e-94 349.7 194 84.5
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 1.4e-94 349.7 194 84.5
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 1.8e-94 349.4 194 84.5
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 1.8e-94 349.4 194 85.1
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 2.4e-94 349.0 214 78.5
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 3.1e-94 348.6 194 85.6
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 3.1e-94 348.6 194 84.5
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 3.1e-94 348.6 214 78.5
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 5.3e-94 347.8 194 85.1
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 5.3e-94 347.8 194 85.1
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 1.2e-93 346.7 194 84.0
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 2.0e-93 345.9 193 84.5
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 2.6e-93 345.5 194 83.5
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 2.6e-93 345.5 194 84.0
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 3.4e-93 345.1 194 83.0
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 3.4e-93 345.1 194 85.6
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 4.5e-93 344.7 194 82.5
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 4.5e-93 344.7 194 83.5
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 82.5
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 82.5
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 82.5
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.0e-92 343.6 194 83.0
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.0e-92 343.6 194 83.5
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 1.0e-92 343.6 194 82.5
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 1.0e-92 343.6 194 83.0
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 1.3e-92 343.2 194 84.0
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.3e-92 343.2 194 83.0
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 1.3e-92 343.2 194 83.5
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 1.3e-92 343.2 194 83.0
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 2.2e-92 342.4 194 83.0
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 2.2e-92 342.4 194 83.5
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 3.8e-92 341.7 194 82.5
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 5.0e-92 341.3 225 75.6
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 5.0e-92 341.3 194 84.0
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 5.0e-92 341.3 194 83.5
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 6.5e-92 340.9 194 83.5
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 8.5e-92 340.5 194 83.0
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.1e-91 340.1 194 81.4
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 1.1e-91 340.1 194 82.5
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 1.1e-91 340.1 194 83.0
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 1.9e-91 339.3 194 83.0
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 1.9e-91 339.3 194 82.5
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 3.2e-91 338.6 194 82.5
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 9.4e-91 337.0 194 83.0
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 1.2e-90 336.7 194 81.4
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 1.2e-90 336.7 194 82.0
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 3.6e-90 335.1 194 83.0
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 3.6e-90 335.1 200 79.0
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 7.9e-90 334.0 187 84.0
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 1.0e-89 333.6 194 80.4
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 1.8e-89 332.8 194 80.9
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 8.8e-89 330.5 188 81.9
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 1.1e-88 330.1 194 78.9
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 1.5e-88 329.7 194 80.9
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 2.0e-88 329.3 214 74.8
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 3.3e-88 328.6 194 79.9
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 9.7e-88 327.0 194 78.4
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 9.7e-88 327.0 195 79.5
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 2.2e-87 325.9 194 77.8
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 2.8e-87 325.5 194 77.8
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 4.8e-87 324.7 194 77.8
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 4.8e-87 324.7 194 77.3
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 1.1e-86 323.6 194 77.3
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 1.8e-86 322.8 194 77.3
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 2.4e-86 322.4 194 77.8
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 2.4e-86 322.4 187 80.2
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 6.9e-86 320.9 194 77.8
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 6.9e-86 320.9 194 77.8
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 6.9e-86 320.9 194 77.8
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 6.9e-86 320.9 235 68.5
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 2.0e-85 319.3 194 77.3
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 2.6e-85 318.9 194 80.4
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 1.0e-84 317.0 194 76.8
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 6.5e-84 314.3 194 75.3
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 7.2e-83 310.8 210 70.0
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 2.1e-82 309.3 178 80.3
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 8.8e-81 303.9 194 72.7
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.5e-80 303.1 174 81.6
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 4.4e-80 301.6 193 75.1
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 5.7e-80 301.2 274 58.8
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 1.7e-79 299.7 175 80.6
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 1.7e-79 299.7 194 74.2
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 4.8e-79 298.1 194 74.2
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 8.2e-79 297.4 210 69.0
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 2.4e-78 295.8 194 69.6
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 9.1e-78 293.9 194 69.6
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 1.2e-77 293.5 194 69.6
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 1.2e-77 293.5 297 53.5
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 2.6e-77 292.4 195 68.2
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 4.5e-77 291.6 194 69.6
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 5.9e-77 291.2 161 86.3
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 1.3e-76 290.0 160 86.2
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 2.9e-76 288.9 162 83.3
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 1.1e-75 287.0 283 55.5
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 4.5e-69 265.0 172 69.8
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 3.6e-58 228.8 120 90.0
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.2e-56 223.8 120 86.7
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 1.5e-56 223.4 134 77.6
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 2.0e-56 223.0 120 86.7
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 4.5e-53 211.8 178 55.6
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.9e-51 206.5 121 77.7
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 9.5e-51 204.1 114 86.0
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 5.7e-48 194.9 123 73.2
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 2.2e-47 193.0 123 71.5
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 2.9e-47 192.6 191 49.2
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 5.6e-43 178.3 114 72.8
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 1.6e-42 176.8 112 72.3
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 8.9e-41 171.0 99 79.8
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 2.0e-40 169.9 122 64.8
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 2.6e-40 169.5 173 49.1
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 3.7e-39 165.6 93 81.7
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 1.9e-38 163.3 89 88.8
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 1.4e-33 147.1 181 41.4
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 6.4e-31 138.3 88 75.0
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 6.4e-31 138.3 88 75.0
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 5.4e-30 135.2 76 78.9
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 7.1e-30 134.8 73 82.2
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 7.1e-30 134.8 73 82.2
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 7.1e-30 134.8 73 82.2
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 1.2e-29 134.0 73 80.8
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 2.7e-29 132.9 71 81.7
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 2.1e-26 123.2 64 85.9
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 4.3e-19 99.0 74 64.9
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.1e-18 96.7 59 79.7
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.6e-13 80.5 56 69.6
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.1e-13 80.1 94 47.9
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.3e-12 77.4 83 50.6
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.3e-12 77.4 83 50.6
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 2.5e-11 73.2 71 54.9
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 1.1e-09 67.8 56 60.7
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 6.9e-09 65.1 93 41.9


User provided reference genes

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