Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 2.0e-43 178.7 90 100.0
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 2.9e-34 148.3 89 85.4
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 8.3e-34 146.7 82 90.2
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 1.1e-33 146.4 84 88.1
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 1.4e-33 146.0 85 85.9
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 1.9e-33 145.6 89 82.0
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 1.9e-33 145.6 84 88.1
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 2.4e-33 145.2 87 82.8
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 3.2e-33 144.8 84 86.9
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 3.2e-33 144.8 82 89.0
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 4.1e-33 144.4 83 86.7
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 5.4e-33 144.1 82 87.8
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 5.4e-33 144.1 82 89.0
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 7.0e-33 143.7 79 89.9
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 1.2e-32 142.9 79 91.1
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 1.6e-32 142.5 79 91.1
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 2.1e-32 142.1 79 89.9
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 4.6e-32 141.0 88 84.1
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 6.0e-32 140.6 79 88.6
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 6.0e-32 140.6 80 88.8
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 6.0e-32 140.6 79 88.6
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 7.8e-32 140.2 82 89.0
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 7.8e-32 140.2 88 81.8
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 1.0e-31 139.8 79 87.3
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 1.3e-31 139.4 82 86.6
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 1.3e-31 139.4 79 88.6
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 5.1e-31 137.5 83 84.3
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 6.6e-31 137.1 86 80.2
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 8.6e-31 136.7 89 78.7
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 8.6e-31 136.7 84 82.1
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 8.6e-31 136.7 86 81.4
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 1.5e-30 136.0 83 81.9
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 1.5e-30 136.0 75 90.7
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 1.5e-30 136.0 75 90.7
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 1.9e-30 135.6 84 81.0
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 1.9e-30 135.6 79 87.3
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 2.5e-30 135.2 82 82.9
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 2.5e-30 135.2 82 82.9
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 2.5e-30 135.2 79 87.3
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 2.5e-30 135.2 79 87.3
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 3.3e-30 134.8 82 82.9
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 3.3e-30 134.8 79 87.3
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 3.3e-30 134.8 79 87.3
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 4.3e-30 134.4 89 76.4
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 4.3e-30 134.4 79 86.1
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 4.3e-30 134.4 79 86.1
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 5.6e-30 134.0 79 86.1
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 5.6e-30 134.0 83 80.7
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 7.3e-30 133.7 79 86.1
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 7.3e-30 133.7 79 84.8
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 7.3e-30 133.7 79 86.1
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 9.5e-30 133.3 79 84.8
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 9.5e-30 133.3 79 84.8
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 9.5e-30 133.3 81 82.7
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 9.5e-30 133.3 79 86.1
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 9.5e-30 133.3 80 85.0
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 1.6e-29 132.5 79 86.1
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 2.1e-29 132.1 79 86.1
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 2.1e-29 132.1 79 83.5
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 2.8e-29 131.7 85 77.6
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 3.6e-29 131.3 79 84.8
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 3.6e-29 131.3 79 84.8
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 3.6e-29 131.3 79 84.8
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 4.7e-29 131.0 79 83.5
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 4.7e-29 131.0 79 83.5
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 4.7e-29 131.0 79 83.5
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 4.7e-29 131.0 79 83.5
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 4.7e-29 131.0 79 83.5
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 4.7e-29 131.0 79 83.5
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 6.2e-29 130.6 79 83.5
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 6.2e-29 130.6 89 75.3
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 6.2e-29 130.6 79 84.8
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 6.2e-29 130.6 79 83.5
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 8.1e-29 130.2 80 81.2
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 1.1e-28 129.8 79 82.3
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 1.1e-28 129.8 79 82.3
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.1e-28 129.8 79 82.3
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 1.4e-28 129.4 79 83.5
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 1.8e-28 129.0 89 74.2
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 1.8e-28 129.0 79 82.3
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 2.3e-28 128.6 80 82.5
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 3.1e-28 128.3 82 80.5
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 5.2e-28 127.5 80 82.5
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 6.8e-28 127.1 81 77.8
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 8.9e-28 126.7 80 81.2
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 1.5e-27 125.9 79 83.5
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 1.5e-27 125.9 79 81.0
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 2.6e-27 125.2 79 78.5
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 3.4e-27 124.8 75 82.7
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 9.9e-27 123.2 80 82.5
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 9.9e-27 123.2 80 82.5
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 2.2e-26 122.1 87 75.9
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 2.2e-26 122.1 129 55.0
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 2.9e-26 121.7 80 78.8
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 2.9e-26 121.7 75 78.7
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 2.9e-26 121.7 79 77.2
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 3.2e-25 118.2 79 74.7
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 1.2e-24 116.3 79 70.9
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 2.7e-24 115.2 105 61.9
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 1.3e-23 112.8 79 69.6
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 5.1e-23 110.9 79 69.6
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 3.3e-22 108.2 79 70.9
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 6.2e-21 104.0 63 81.0
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 6.2e-21 104.0 79 68.4
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 4.2e-17 91.3 56 80.4
CAN.G395.47 Capsicum annuum HOM05D005526 ORTHO05D006802 1.7e-15 85.9 49 85.7
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 1.6e-13 79.3 70 58.6
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 9.9e-11 70.1 54 70.4
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 8.4e-10 67.0 41 78.0
COL.COLO4_12895 Corchorus olitorius HOM05D005526 ORTHO05D006802 2.3e-07 58.9 30 90.0


User provided reference genes

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