Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 4.1e-59 231.1 109 100.0
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 2.0e-29 132.5 157 47.8
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 9.1e-27 123.6 169 42.6
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 3.5e-26 121.7 125 51.2
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 1.0e-25 120.2 169 40.8
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 1.3e-25 119.8 163 42.9
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 5.0e-25 117.9 148 44.6
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 6.5e-25 117.5 169 42.0
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.5e-25 117.5 148 44.6
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 2.5e-24 115.5 146 45.2
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.6e-23 112.8 163 40.5
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 2.1e-23 112.5 169 40.8
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 2.8e-23 112.1 169 40.8
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 3.6e-23 111.7 172 39.5
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.1e-23 110.9 170 38.2
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 8.0e-23 110.5 169 37.9
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 8.0e-23 110.5 169 37.9
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 8.0e-23 110.5 73 67.1
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 1.0e-22 110.2 161 39.8
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 1.8e-22 109.4 161 39.8
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 3.0e-22 108.6 72 68.1
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 3.0e-22 108.6 144 41.0
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 4.0e-22 108.2 169 38.5
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 5.2e-22 107.8 81 64.2
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 5.2e-22 107.8 81 64.2
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 6.8e-22 107.5 169 37.3
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 6.8e-22 107.5 163 39.9
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 6.8e-22 107.5 146 43.2
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 6.8e-22 107.5 166 39.8
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 6.8e-22 107.5 72 63.9
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 6.8e-22 107.5 163 39.9
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 1.2e-21 106.7 163 41.1
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 1.5e-21 106.3 170 36.5
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.0e-21 105.9 169 37.3
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 2.6e-21 105.5 151 42.4
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 3.4e-21 105.1 163 39.3
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 3.4e-21 105.1 161 41.0
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.4e-21 105.1 170 37.6
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 4.4e-21 104.8 169 37.9
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 4.4e-21 104.8 163 39.3
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 5.7e-21 104.4 160 40.0
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 5.7e-21 104.4 166 38.0
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 7.5e-21 104.0 72 66.7
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 7.5e-21 104.0 163 39.9
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 9.8e-21 103.6 163 38.7
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 4.9e-20 101.3 116 44.0
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 4.9e-20 101.3 163 39.9
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 4.9e-20 101.3 72 59.7
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 4.9e-20 101.3 169 37.9
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 8.3e-20 100.5 80 60.0
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 1.4e-19 99.8 169 36.1
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 1.4e-19 99.8 163 37.4
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 1.8e-19 99.4 82 58.5
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.8e-19 99.4 80 58.8
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 1.8e-19 99.4 72 61.1
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 1.8e-19 99.4 169 38.5
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 5.4e-19 97.8 169 34.9
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 5.4e-19 97.8 169 37.3
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 7.0e-19 97.4 70 58.6
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 7.0e-19 97.4 169 36.7
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 9.2e-19 97.1 81 54.3
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 1.2e-18 96.7 158 39.2
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.6e-18 96.3 155 39.4
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 1.6e-18 96.3 165 38.2
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 1.6e-18 96.3 157 38.2
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 2.7e-18 95.5 138 40.6
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.7e-18 95.5 138 41.3
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.7e-18 95.5 156 38.5
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 2.7e-18 95.5 156 38.5
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 2.7e-18 95.5 163 36.8
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 3.5e-18 95.1 167 37.7
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 3.5e-18 95.1 151 35.1
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 5.9e-18 94.4 158 35.4
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 5.9e-18 94.4 136 40.4
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 5.9e-18 94.4 71 62.0
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 5.9e-18 94.4 169 33.7
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 5.9e-18 94.4 62 59.7
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 7.8e-18 94.0 170 34.7
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 7.8e-18 94.0 170 34.7
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 7.8e-18 94.0 170 34.7
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 7.8e-18 94.0 170 34.7
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 7.8e-18 94.0 170 34.7
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.0e-17 93.6 80 56.2
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 1.0e-17 93.6 155 38.7
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.0e-17 93.6 138 39.9
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 1.0e-17 93.6 155 36.1
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.3e-17 93.2 69 60.9
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.3e-17 93.2 169 36.1
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.7e-17 92.8 69 59.4
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.7e-17 92.8 69 59.4
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 2.3e-17 92.4 169 33.7
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 2.3e-17 92.4 138 41.3
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 2.9e-17 92.0 151 37.1
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 3.8e-17 91.7 158 34.8
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 3.8e-17 91.7 155 37.4
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 5.0e-17 91.3 138 40.6
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 6.6e-17 90.9 80 58.8
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 8.6e-17 90.5 180 32.8
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 1.5e-16 89.7 164 36.6
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.5e-16 89.7 158 36.1
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.9e-16 89.4 158 35.4
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 1.9e-16 89.4 78 53.8
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 2.5e-16 89.0 158 36.1
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.3e-16 88.6 158 35.4
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 3.3e-16 88.6 155 36.8
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 4.3e-16 88.2 49 75.5
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 5.6e-16 87.8 49 79.6
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 9.5e-16 87.0 63 65.1
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.6e-15 86.3 158 36.1
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 2.8e-15 85.5 67 61.2
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 2.8e-15 85.5 50 76.0
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 3.6e-15 85.1 50 72.0
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 3.6e-15 85.1 138 37.0
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 3.6e-15 85.1 137 35.8
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 6.1e-15 84.3 138 38.4
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 8.0e-15 84.0 49 71.4
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 1.8e-14 82.8 71 57.7
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 1.8e-14 82.8 138 37.0
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 3.0e-14 82.0 155 33.5
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 4.0e-14 81.6 141 34.0
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 5.2e-14 81.3 71 56.3
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 5.2e-14 81.3 146 34.2
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 5.2e-14 81.3 63 58.7
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 6.8e-14 80.9 57 63.2
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 6.8e-14 80.9 57 63.2
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 8.9e-14 80.5 137 35.0
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.5e-13 79.7 49 67.3
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 1.3e-12 76.6 48 68.8
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 1.3e-12 76.6 68 55.9
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 1.1e-11 73.6 61 54.1
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 3.9e-09 65.1 47 66.0
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 8.6e-09 63.9 49 55.1
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 1.8e-06 56.2 61 41.0


User provided reference genes

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