Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 0.0e+00 2026.5 1119 100.0
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 0.0e+00 1192.9 1150 61.4
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 0.0e+00 1166.4 1145 61.3
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1150.2 1165 60.7
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 0.0e+00 1137.1 1143 59.8
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 0.0e+00 1115.1 1130 56.7
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 0.0e+00 1089.3 1160 57.1
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 0.0e+00 1085.9 1133 57.6
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 0.0e+00 1077.0 1172 56.1
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 1.3e-309 1066.6 1204 55.9
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 3.3e-305 1052.0 944 60.8
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 4.3e-305 1051.6 1146 56.5
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 2.7e-299 1032.3 1146 56.5
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 1.7e-298 1029.6 1146 56.4
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 3.0e-298 1028.9 881 62.8
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 1.4e-295 1020.0 1136 56.5
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 2.9e-285 985.7 1160 54.1
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 4.9e-285 984.9 1217 50.9
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 6.7e-282 974.5 1198 53.7
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 1.0e-277 960.7 1174 53.3
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 2.9e-277 959.1 1173 53.0
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 6.5e-277 958.0 1195 52.0
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 1.9e-276 956.4 1205 54.9
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 9.3e-276 954.1 978 61.6
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 3.5e-275 952.2 1071 55.2
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 6.7e-274 948.0 1171 52.6
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 2.8e-272 942.6 1174 51.1
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 6.3e-272 941.4 1159 52.6
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 2.4e-271 939.5 1192 52.3
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 3.4e-270 935.6 1163 51.4
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 1.1e-268 930.6 1182 49.7
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 2.7e-267 926.0 1167 52.2
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 3.6e-267 925.6 1180 51.4
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 6.1e-267 924.9 1191 49.0
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 3.0e-266 922.5 1166 50.3
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 3.9e-266 922.2 1037 54.0
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 2.2e-264 916.4 1153 51.9
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 2.6e-262 909.4 1166 52.8
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 2.6e-262 909.4 1158 51.4
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 5.9e-262 908.3 1138 50.2
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 3.2e-260 902.5 957 55.0
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 3.9e-258 895.6 1227 47.8
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 1.5e-257 893.6 1153 52.4
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 4.4e-257 892.1 1190 51.8
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 4.8e-256 888.6 1177 48.9
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 2.4e-255 886.3 1180 49.7
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 2.6e-254 882.9 1177 52.6
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.3e-253 880.6 1212 50.8
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 1.3e-253 880.6 1149 52.7
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 1.7e-253 880.2 1151 49.3
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 2.5e-252 876.3 1176 48.4
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 3.2e-252 875.9 1151 49.3
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 4.2e-252 875.5 1164 49.3
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 3.6e-251 872.5 1149 52.6
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 3.0e-250 869.4 1147 50.1
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 6.7e-250 868.2 1153 49.7
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 8.2e-248 861.3 1219 49.8
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 4.1e-247 859.0 1153 51.1
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 2.6e-246 856.3 1165 49.3
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 1.0e-245 854.4 1274 48.0
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 8.5e-245 851.3 1169 48.2
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 3.2e-244 849.4 1055 53.6
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 1.2e-243 847.4 1150 49.5
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 2.1e-243 846.7 1159 50.6
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 8.0e-243 844.7 1156 49.3
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 5.7e-241 838.6 1152 49.0
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.3e-240 837.4 1112 51.3
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 2.2e-240 836.6 1203 51.5
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 9.1e-239 831.2 1156 48.2
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 5.0e-237 825.5 1154 47.9
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 7.2e-236 821.6 1183 48.4
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 1.6e-235 820.5 1164 47.9
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 2.7e-235 819.7 1158 48.0
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 2.3e-234 816.6 1148 48.8
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 3.7e-232 809.3 1148 49.0
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 2.3e-229 800.0 1150 47.8
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 2.9e-229 799.7 1183 46.9
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 2.6e-225 786.6 1156 47.1
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 1.8e-223 780.4 1161 46.2
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 1.8e-223 780.4 1156 47.0
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 1.2e-222 777.7 1155 48.0
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 7.8e-222 775.0 1155 46.1
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 1.1e-220 771.2 1155 48.3
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 1.5e-220 770.8 1145 46.3
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 3.4e-217 759.6 1155 45.6
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 3.4e-217 759.6 1150 45.0
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 2.9e-216 756.5 1168 45.9
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 2.9e-216 756.5 1148 45.6
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 3.7e-216 756.1 1155 44.6
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 1.2e-214 751.1 1143 47.5
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 1.3e-213 747.7 1136 46.0
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.7e-213 747.3 781 55.6
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 3.0e-213 746.5 1150 46.1
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 3.9e-213 746.1 1001 49.2
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 1.1e-212 744.6 1149 46.4
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 2.5e-212 743.4 792 54.9
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.2e-211 741.1 801 58.4
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 1.4e-210 737.6 1147 47.2
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 1.4e-210 737.6 1257 44.6
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 2.3e-210 736.9 1164 44.4
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 1.7e-208 730.7 1142 45.5
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 3.7e-208 729.6 1147 43.9
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 1.4e-207 727.6 1243 44.3
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 2.1e-206 723.8 1151 45.7
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 3.5e-206 723.0 1137 45.9
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 3.5e-206 723.0 1137 45.9
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 3.5e-206 723.0 1154 45.2
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 6.0e-206 722.2 1137 46.1
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 2.5e-196 690.3 1144 43.6
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 7.3e-196 688.7 860 54.9
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 3.5e-190 669.8 926 47.3
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 6.9e-178 629.0 1068 43.7
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 1.8e-173 614.4 1132 42.0
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 5.3e-170 602.8 1143 40.8
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 7.1e-167 592.4 1028 42.2
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 7.1e-167 592.4 1158 39.1
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 1.8e-157 561.2 1151 39.4
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 4.4e-140 503.4 536 53.9
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 3.0e-133 480.7 1055 36.9
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 2.6e-132 477.6 1040 36.6
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 2.9e-128 464.2 1133 35.2
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 8.5e-128 462.6 870 40.0
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 4.4e-124 450.3 1157 34.8
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 5.9e-121 439.9 1173 35.5
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 5.0e-104 383.6 1201 31.1
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.0e-101 375.9 1179 31.8
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.1e-95 355.9 1186 34.1
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 5.6e-95 353.6 324 59.0
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 6.8e-85 320.1 414 46.4
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 9.6e-79 299.7 963 32.0
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 3.8e-75 287.7 681 38.5
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 3.3e-71 274.6 473 41.4
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 1.1e-69 269.6 907 29.4
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 2.0e-68 265.4 1081 29.5
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 2.2e-67 261.9 1039 28.5
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 1.1e-66 259.6 888 29.1
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 7.9e-65 253.4 840 29.2
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 7.9e-65 253.4 895 29.5
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 3.0e-64 251.5 337 45.1
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 7.6e-60 236.9 1033 28.3
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 2.3e-56 225.3 901 28.9
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 6.7e-56 223.8 210 57.1
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 1.5e-55 222.6 385 41.8
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 3.3e-55 221.5 451 39.5
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 4.0e-53 214.5 930 28.2
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 2.9e-51 208.4 570 31.6
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 8.7e-48 196.8 888 27.9
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 2.5e-47 195.3 224 52.2
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 4.1e-45 188.0 439 34.9
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 1.5e-44 186.0 1127 25.6
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 6.1e-41 174.1 212 49.5
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 1.8e-40 172.6 168 54.2
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 2.5e-39 168.7 661 28.4
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 2.5e-39 168.7 265 43.0
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 5.7e-39 167.5 881 24.7
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 7.4e-39 167.2 760 27.8
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 1.6e-38 166.0 699 26.8
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 9.4e-34 150.2 1077 24.6
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 3.6e-33 148.3 834 25.5
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 1.0e-32 146.7 921 25.2
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 9.1e-29 133.7 332 47.6
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 2.2e-27 129.0 1041 23.2
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 1.4e-26 126.3 111 55.0
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 9.7e-23 113.6 174 47.7
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 2.4e-21 109.0 129 42.6
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 4.5e-20 104.8 173 33.5
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 1.1e-18 100.1 351 39.9
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 8.0e-17 94.0 82 54.9
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 5.2e-16 91.3 90 51.1
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 3.3e-15 88.6 153 39.9
Atru.chr11.323 Acer truncatum HOM05D001849 ORTHO05D004075 7.0e-13 80.9 514 24.7
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 2.0e-12 79.3 133 42.1
Nitab4.5_0004322g0030 Nicotiana tabacum HOM05D001849 ORTHO05D004075 3.2e-10 72.0 64 56.2
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 7.2e-10 70.9 88 39.8
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 8.0e-09 67.4 71 50.7
Glyma.16G010466 Glycine max HOM05D001849 ORTHO05D004075 3.7e-06 58.5 36 72.2


User provided reference genes

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