Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 0.0e+00 1374.8 705 100.0
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 8.5e-251 870.5 687 65.9
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 4.0e-248 861.7 712 64.5
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 1.2e-241 840.1 685 63.9
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 4.4e-239 831.6 689 62.1
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 8.3e-238 827.4 740 59.5
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 2.8e-233 812.4 680 62.6
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 8.9e-232 807.4 704 61.4
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 7.5e-231 804.3 684 61.8
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 8.3e-230 800.8 686 60.3
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 9.2e-229 797.3 702 61.0
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 1.2e-228 797.0 680 61.8
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 3.0e-227 792.3 702 60.7
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 1.6e-225 786.6 712 59.1
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 4.4e-223 778.5 702 59.8
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 6.4e-222 774.6 704 58.7
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 6.4e-222 774.6 687 60.4
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 1.1e-221 773.9 704 58.7
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 1.4e-221 773.5 657 59.7
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 3.2e-221 772.3 699 58.5
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 1.2e-220 770.4 732 57.2
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 4.6e-220 768.5 704 58.0
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 6.0e-220 768.1 709 58.3
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 7.8e-220 767.7 707 58.6
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 1.2e-217 760.4 707 56.7
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 2.1e-217 759.6 681 57.9
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 9.2e-213 744.2 658 58.8
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 6.0e-212 741.5 684 56.0
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 6.6e-211 738.0 716 55.4
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 1.1e-210 737.3 716 55.0
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 1.5e-210 736.9 656 58.7
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 1.9e-210 736.5 708 55.2
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 2.5e-210 736.1 716 54.9
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 7.3e-210 734.6 673 56.6
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 4.7e-209 731.9 657 56.9
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 4.7e-209 731.9 707 56.0
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 4.0e-208 728.8 704 56.7
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 9.9e-207 724.2 710 54.8
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 1.1e-205 720.7 669 56.8
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 1.9e-205 719.9 562 67.6
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 4.2e-205 718.8 711 54.0
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 4.2e-205 718.8 744 53.6
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 5.4e-205 718.4 669 57.0
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 1.0e-203 714.1 709 54.6
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 2.3e-203 713.0 855 48.7
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 3.0e-203 712.6 712 54.9
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 2.5e-202 709.5 710 54.5
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 5.6e-202 708.4 709 54.3
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 1.6e-201 706.8 698 53.4
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 2.8e-201 706.1 717 53.8
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 8.1e-201 704.5 713 54.1
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 1.1e-200 704.1 704 54.4
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 1.4e-200 703.7 668 55.7
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 1.8e-200 703.4 698 53.7
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.8e-200 703.4 710 53.7
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 1.2e-199 700.7 693 53.5
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 5.8e-199 698.4 691 53.8
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 1.7e-198 696.8 642 58.6
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 6.4e-198 694.9 690 55.8
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 2.4e-197 693.0 703 52.2
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 2.4e-197 693.0 703 52.8
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 2.4e-197 693.0 676 54.3
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 4.2e-197 692.2 735 52.1
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 7.1e-197 691.4 696 53.6
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 9.3e-197 691.0 678 53.4
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.2e-196 690.6 658 55.5
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 3.5e-196 689.1 657 55.3
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 4.6e-196 688.7 676 55.9
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 4.6e-196 688.7 639 56.2
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 2.3e-195 686.4 687 53.1
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 5.1e-195 685.3 692 52.2
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 1.9e-194 683.3 704 52.3
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 9.6e-194 681.0 707 52.5
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 2.1e-193 679.9 704 51.4
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 1.4e-192 677.2 662 54.4
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 2.4e-192 676.4 653 53.4
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 4.0e-192 675.6 682 53.4
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 9.0e-192 674.5 690 51.2
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 1.2e-191 674.1 718 52.6
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 3.8e-190 669.1 717 50.9
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 2.4e-189 666.4 632 55.5
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 6.0e-188 661.8 691 50.7
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 1.0e-187 661.0 707 50.4
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 6.7e-187 658.3 692 50.4
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 8.7e-187 657.9 692 50.4
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 1.1e-186 657.5 708 53.1
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 2.1e-185 653.3 683 54.2
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 3.7e-185 652.5 703 50.6
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 3.1e-184 649.4 705 50.1
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 1.8e-179 633.6 703 49.6
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 8.7e-179 631.3 1055 38.9
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 4.3e-178 629.0 671 51.0
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 3.7e-169 599.4 713 48.4
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.7e-166 590.5 610 53.0
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 5.0e-166 589.0 610 53.0
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.1e-162 577.8 683 50.5
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.2e-151 541.2 638 46.1
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 3.0e-147 526.6 612 45.6
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 2.5e-141 506.9 476 56.1
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 2.1e-124 450.7 390 62.1
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 3.2e-120 436.8 708 40.4
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 2.0e-106 391.0 376 56.1
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 1.2e-98 365.2 661 38.1
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 7.8e-95 352.4 573 37.3
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.7e-94 351.3 677 37.2
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 1.9e-93 347.8 649 36.4
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 2.5e-93 347.4 313 59.7
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 9.6e-93 345.5 620 36.8
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 4.3e-77 293.5 588 33.8
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.4e-75 288.5 370 43.2
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 2.4e-72 277.7 238 58.4
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 2.2e-52 211.5 596 29.2
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 2.5e-48 198.0 206 49.5
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 2.8e-44 184.5 168 56.5
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 1.4e-43 182.2 631 25.5
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 9.1e-35 152.9 604 26.8
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 2.6e-34 151.4 670 23.7
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.5e-24 119.0 217 37.3
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 3.2e-24 117.9 111 54.1
PRCOL_00005763 Prasinoderma coloniale HOM05D005942 ORTHO05D007209 2.7e-23 114.8 461 25.2
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 8.0e-23 113.2 142 45.1
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.5e-21 109.0 159 42.1
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 7.0e-19 100.1 120 45.8
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 1.3e-17 95.9 150 42.0
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 5.5e-16 90.5 92 51.1
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 1.4e-14 85.9 73 58.9
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 3.1e-11 74.7 69 53.6
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 3.1e-11 74.7 188 31.4
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 1.2e-10 72.8 104 37.5
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 2.9e-09 68.2 73 47.9
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.4e-06 59.3 54 51.9


User provided reference genes

Program Settings