Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 2355.5 1318 100.0
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1926.8 1318 77.0
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1889.8 1318 76.3
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1889.0 1304 76.8
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1872.1 1318 75.4
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1864.4 1318 75.6
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1832.4 1318 74.4
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1815.4 1318 73.0
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1798.9 1318 72.7
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1793.5 1318 73.3
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1793.1 1322 73.1
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1780.4 1318 72.8
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1779.6 1318 71.8
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1769.2 1318 72.2
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1767.7 1318 72.2
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1767.7 1318 72.2
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1766.1 1318 72.8
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1766.1 1318 72.2
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1760.3 1318 72.2
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1757.3 1550 65.6
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1752.6 1318 70.8
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1752.3 1318 70.3
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1751.1 1318 70.2
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1741.1 1318 72.3
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1735.7 1318 70.3
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1731.5 1366 69.8
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1731.1 1436 66.9
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1721.4 1318 71.5
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1721.1 1318 70.7
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1718.7 1318 71.3
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1714.1 1318 69.5
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1706.8 1318 70.9
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1704.9 1318 69.4
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1689.1 1318 70.4
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1687.9 1318 69.0
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1682.2 1318 69.6
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1681.8 1318 70.3
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1675.2 1318 68.0
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1674.4 1318 67.4
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1673.7 1341 69.5
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1666.7 1333 69.6
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1666.7 1318 67.2
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1666.4 1333 69.6
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1666.4 1360 68.5
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1665.6 1344 68.7
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1664.8 1262 71.6
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1657.5 1318 68.1
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1653.3 1318 67.8
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1652.5 1304 69.0
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1645.2 1326 67.5
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1637.5 1318 65.9
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1628.6 1318 67.0
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1625.1 1211 71.6
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1616.3 1211 71.0
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1611.7 1371 64.5
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1597.0 1318 66.1
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1581.2 1304 66.7
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1577.4 1318 66.5
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1575.8 1318 66.5
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1575.5 1318 64.9
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1573.5 1318 63.9
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1564.7 1402 62.1
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1564.3 1318 64.6
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1563.5 1319 65.2
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1562.7 1319 65.2
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1561.6 1319 65.1
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1551.6 1338 64.3
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1545.0 1318 64.6
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1540.8 1318 63.4
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1531.9 1318 62.5
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1520.4 1304 63.4
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1513.0 1318 64.0
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1511.1 1371 63.6
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1473.0 1255 64.1
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1447.2 1304 61.3
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1246.1 1318 53.6
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 1110.5 1319 48.4
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 0.0e+00 1088.6 1315 47.6
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 9.0e-312 1074.7 1026 60.3
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 2.2e-308 1062.8 1063 54.7
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 3.1e-302 1042.3 1060 56.1
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 5.8e-301 1038.1 903 64.2
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 2.2e-292 1009.6 744 71.4
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 4.8e-287 991.9 760 70.4
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 4.5e-285 985.3 1317 45.1
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.4e-275 953.7 889 58.9
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 8.7e-273 944.5 768 66.5
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 5.1e-265 918.7 1254 47.6
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 1.2e-253 880.9 1103 49.1
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 1.8e-246 857.1 669 68.8
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 1.0e-244 851.3 732 63.9
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 6.1e-242 842.0 791 61.1
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 1.7e-239 833.9 762 58.1
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 2.2e-236 823.5 631 68.9
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 4.2e-235 819.3 631 68.6
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 6.7e-233 812.0 725 59.6
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.8e-222 777.3 594 70.9
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.8e-222 777.3 594 70.9
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 8.3e-215 751.9 631 66.1
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 5.9e-205 719.2 1270 37.7
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 7.8e-205 718.8 558 70.3
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 1.6e-194 684.5 735 54.6
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 3.5e-181 640.2 591 60.9
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 1.7e-167 594.7 1380 32.9
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 2.7e-157 560.8 350 82.3
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.1e-150 538.9 376 74.2
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 1.3e-143 515.4 524 57.6
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 3.2e-142 510.8 436 67.0
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 2.9e-135 487.6 1378 30.7
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 6.5e-135 486.5 296 83.8
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.0e-132 479.2 383 66.8
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 4.8e-130 470.3 1350 30.4
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 6.1e-125 453.4 455 56.9
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 3.5e-120 437.6 1335 28.4
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 3.8e-119 434.1 244 88.9
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.3e-116 424.9 222 95.0
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 6.7e-116 423.3 264 82.6
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 4.1e-113 414.1 395 58.7
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 1.5e-110 405.6 224 90.2
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 2.4e-105 388.3 854 35.9
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 1.0e-103 382.9 318 65.4
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 6.6e-95 353.6 187 94.1
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 6.0e-88 330.5 436 48.4
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 7.8e-88 330.1 223 78.0
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 1.3e-82 312.8 234 69.2
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 9.6e-62 243.4 126 95.2
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 2.8e-53 215.3 140 81.4
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 1.4e-49 203.0 139 78.4
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 1.1e-46 193.4 168 60.7
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 3.1e-44 185.3 170 58.8
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 4.8e-37 161.4 87 93.1
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 4.9e-34 151.4 106 75.5
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 8.4e-34 150.6 165 55.8
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 2.7e-32 145.6 114 66.7
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 3.5e-32 145.2 226 42.5
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.1e-30 140.2 72 90.3
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 3.6e-24 118.6 141 46.1
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 1.7e-21 109.8 64 84.4
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 1.7e-21 109.8 64 81.2
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 3.7e-21 108.6 106 58.5
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 3.7e-21 108.6 100 62.0
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 3.2e-17 95.5 89 59.6
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 9.7e-14 84.0 77 59.7
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 1.3e-13 83.6 89 53.9
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 1.7e-13 83.2 77 58.4
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 1.4e-12 80.1 70 61.4
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 1.1e-09 70.5 63 63.5
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 2.7e-08 65.9 61 63.9
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 3.6e-08 65.5 56 67.9
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 8.0e-08 64.3 208 28.8
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 8.8e-07 60.8 33 90.9


User provided reference genes

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