Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 8.2e-82 307.0 154 100.0
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 1.9e-41 172.9 153 58.2
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 4.1e-41 171.8 154 58.4
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.1e-40 169.5 153 57.5
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 1.9e-38 162.9 149 57.0
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 2.1e-37 159.5 150 56.0
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 4.0e-36 155.2 154 55.2
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 1.2e-35 153.7 152 54.6
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 3.4e-35 152.1 148 56.8
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 9.9e-35 150.6 147 55.8
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 2.2e-34 149.4 155 51.6
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 2.9e-34 149.1 148 54.1
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 2.9e-34 149.1 134 57.5
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 6.4e-34 147.9 133 57.1
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 6.4e-34 147.9 124 59.7
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 6.4e-34 147.9 151 51.7
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 8.4e-34 147.5 147 52.4
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 1.9e-33 146.4 149 53.7
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 1.9e-33 146.4 147 52.4
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 2.4e-33 146.0 152 52.6
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 2.4e-33 146.0 157 49.7
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 2.4e-33 146.0 144 55.6
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 5.4e-33 144.8 141 56.7
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 5.4e-33 144.8 127 59.1
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 7.1e-33 144.4 135 54.8
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 7.1e-33 144.4 134 52.2
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 7.1e-33 144.4 138 56.5
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 9.2e-33 144.1 140 55.0
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 1.2e-32 143.7 148 56.1
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.6e-32 143.3 142 52.8
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.1e-32 142.9 145 53.1
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 2.1e-32 142.9 147 53.1
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 2.1e-32 142.9 161 50.3
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.7e-32 142.5 146 52.7
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 2.7e-32 142.5 146 54.1
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 4.6e-32 141.7 153 50.3
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 4.6e-32 141.7 140 54.3
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 4.6e-32 141.7 151 51.0
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 4.6e-32 141.7 142 52.1
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 7.8e-32 141.0 146 54.8
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 7.8e-32 141.0 140 52.1
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 7.8e-32 141.0 147 53.7
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 1.0e-31 140.6 147 52.4
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.3e-31 140.2 146 54.8
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.3e-31 140.2 145 52.4
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.3e-31 140.2 150 52.7
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 1.3e-31 140.2 150 52.7
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 1.3e-31 140.2 145 55.2
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 1.3e-31 140.2 148 54.1
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 1.3e-31 140.2 133 54.9
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 1.7e-31 139.8 160 49.4
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 2.3e-31 139.4 141 51.1
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 3.0e-31 139.0 153 50.3
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 3.9e-31 138.7 148 50.7
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 3.9e-31 138.7 153 52.3
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 5.1e-31 138.3 138 53.6
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 8.6e-31 137.5 146 54.1
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 8.6e-31 137.5 125 56.8
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 1.1e-30 137.1 153 49.7
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 1.9e-30 136.3 164 47.6
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 1.9e-30 136.3 163 46.6
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 2.5e-30 136.0 124 58.9
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 3.3e-30 135.6 139 50.4
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 4.3e-30 135.2 148 52.7
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 4.3e-30 135.2 148 50.0
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 9.6e-30 134.0 149 48.3
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 2.1e-29 132.9 142 50.0
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 2.8e-29 132.5 121 52.9
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 2.8e-29 132.5 169 47.3
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 3.6e-29 132.1 147 52.4
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 3.6e-29 132.1 147 51.0
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 4.7e-29 131.7 147 52.4
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 1.1e-28 130.6 142 53.5
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 1.1e-28 130.6 142 53.5
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.4e-28 130.2 125 55.2
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 1.4e-28 130.2 149 51.7
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 1.4e-28 130.2 153 48.4
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 1.8e-28 129.8 143 53.1
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 1.8e-28 129.8 143 53.1
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 1.8e-28 129.8 126 54.0
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.4e-28 129.4 146 51.4
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 3.1e-28 129.0 148 49.3
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 4.0e-28 128.6 126 57.1
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 5.2e-28 128.3 143 50.3
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 1.5e-27 126.7 156 43.6
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 2.6e-27 125.9 149 51.0
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 7.6e-27 124.4 149 48.3
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 7.6e-27 124.4 149 47.7
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 9.9e-27 124.0 147 46.9
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 1.3e-26 123.6 149 47.0
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 1.7e-26 123.2 144 48.6
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 1.7e-26 123.2 147 45.6
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 2.2e-26 122.9 90 66.7
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 2.9e-26 122.5 94 62.8
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 3.8e-26 122.1 142 49.3
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 3.8e-26 122.1 146 50.0
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 4.9e-26 121.7 134 50.7
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 4.9e-26 121.7 148 48.6
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 6.4e-26 121.3 144 49.3
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 6.4e-26 121.3 144 49.3
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 1.9e-25 119.8 144 51.4
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 1.9e-25 119.8 144 51.4
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 1.9e-25 119.8 144 51.4
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 1.9e-25 119.8 145 49.7
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 3.2e-25 119.0 127 48.8
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 3.2e-25 119.0 92 59.8
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 4.2e-25 118.6 124 50.0
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 7.1e-25 117.9 88 64.8
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 9.3e-25 117.5 142 48.6
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 2.7e-24 115.9 86 65.1
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 4.6e-24 115.2 94 57.4
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 6.0e-24 114.8 152 45.4
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 6.0e-24 114.8 87 62.1
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 7.8e-24 114.4 136 46.3
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 3.0e-23 112.5 148 43.9
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 5.1e-23 111.7 148 43.9
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 6.6e-23 111.3 127 48.0
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 1.1e-22 110.5 132 46.2
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 1.1e-22 110.5 132 46.2
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 4.3e-22 108.6 142 41.5
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 5.6e-22 108.2 140 48.6
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 7.3e-22 107.8 143 44.8
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 2.8e-21 105.9 75 68.0
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 4.8e-21 105.1 126 43.7
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 6.2e-21 104.8 142 40.8
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.1e-20 104.0 83 61.4
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 1.8e-20 103.2 149 43.0
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 1.8e-20 103.2 159 40.3
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 2.4e-20 102.8 117 49.6
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 2.4e-20 102.8 153 39.9
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 4.0e-20 102.1 127 44.1
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 5.3e-20 101.7 126 43.7
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 2.6e-19 99.4 152 37.5
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 7.6e-19 97.8 146 40.4
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 1.3e-18 97.1 121 45.5
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 2.2e-18 96.3 92 53.3
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 6.4e-18 94.7 150 41.3
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 3.5e-16 89.0 58 75.9
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 4.6e-16 88.6 134 41.0
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 6.0e-16 88.2 118 41.5
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 8.7e-15 84.3 133 40.6
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 5.6e-14 81.6 93 45.2
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 5.3e-12 75.1 146 38.4
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 1.5e-11 73.6 118 36.4
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 2.6e-11 72.8 66 57.6
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 4.5e-11 72.0 98 41.8
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.9e-10 69.3 142 34.5
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 2.9e-10 69.3 50 66.0
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 3.8e-10 68.9 104 40.4
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 1.4e-09 67.0 85 42.4
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 5.5e-09 65.1 71 46.5
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 2.1e-08 63.2 104 39.4
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 3.5e-08 62.4 43 67.4
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 4.6e-08 62.0 141 31.9
Hma1.2p1_0549F.1_g176960 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 1.9e-06 56.6 34 76.5
Solyc11g007810.3 Solanum lycopersicum HOM05D004569 ORTHO05D005333 3.3e-06 55.8 70 41.4


User provided reference genes

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