Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g01990 Coffea canephora HOM05D007625 ORTHO05D009738 5.2e-139 497.7 243 100.0
GSVIVG01017755001 Vitis vinifera HOM05D007625 ORTHO05D009738 2.4e-99 365.9 242 73.1
Rhsim02G0009500 Rhododendron simsii HOM05D007625 ORTHO05D009738 5.8e-98 361.3 246 72.0
TWI09G0101 Tripterygium wilfordii HOM05D007625 ORTHO05D009738 2.2e-97 359.4 242 71.9
CSS0007271 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 2.9e-97 359.0 243 71.6
Ciclev10005679m.g Citrus clementina HOM05D007625 ORTHO05D009738 8.4e-97 357.5 240 71.7
Actinidia00027 Actinidia chinensis HOM05D007625 ORTHO05D009738 1.1e-96 357.1 243 70.4
Atru.chr4.2832 Acer truncatum HOM05D007625 ORTHO05D009738 1.2e-95 353.6 240 70.8
Thecc.04G284200 Theobroma cacao HOM05D007625 ORTHO05D009738 2.1e-95 352.8 244 70.5
TAR633G2367 Trochodendron aralioides HOM05D007625 ORTHO05D009738 7.8e-95 350.9 242 71.5
arahy.Tifrunner.gnm1.ann1.96EVWK Arachis hypogaea HOM05D007625 ORTHO05D009738 6.6e-94 347.8 250 68.8
arahy.Tifrunner.gnm1.ann1.QKB3E6 Arachis hypogaea HOM05D007625 ORTHO05D009738 6.6e-94 347.8 250 68.4
Manes.03G194700 Manihot esculenta HOM05D007625 ORTHO05D009738 1.5e-93 346.7 244 71.3
SGA_v2.0_scaffold428G51521 Striga asiatica HOM05D007625 ORTHO05D009738 1.5e-93 346.7 240 68.8
BcaB06g25757 Brassica carinata HOM05D007625 ORTHO05D009738 1.9e-93 346.3 242 69.0
Duzib212G0442 Durio zibethinus HOM05D007625 ORTHO05D009738 9.6e-93 344.0 242 68.6
QL06p008815 Quercus lobata HOM05D007625 ORTHO05D009738 2.1e-92 342.8 243 71.2
Gohir.A09G239300 Gossypium hirsutum HOM05D007625 ORTHO05D009738 6.2e-92 341.3 244 67.2
Migut.N00092 Erythranthe guttata HOM05D007625 ORTHO05D009738 1.1e-91 340.5 241 67.6
CANSAT78G1499 Cannabis sativa HOM05D007625 ORTHO05D009738 1.4e-91 340.1 243 68.7
CARHR091770 Cardamine hirsuta HOM05D007625 ORTHO05D009738 2.4e-91 339.3 242 68.2
Thhalv10021369m.g Eutrema salsugineum HOM05D007625 ORTHO05D009738 2.4e-91 339.3 242 68.6
MBI18_g04687_MAGBIO Magnolia biondii HOM05D007625 ORTHO05D009738 2.4e-91 339.3 245 67.3
Prupe.1G137400 Prunus persica HOM05D007625 ORTHO05D009738 4.0e-91 338.6 242 69.4
Lj4g0027770 Lotus japonicus HOM05D007625 ORTHO05D009738 5.3e-91 338.2 243 68.3
RcHm_v2.0_Chr4g0422131 Rosa chinensis HOM05D007625 ORTHO05D009738 6.9e-91 337.8 245 66.1
FAN07G2640 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.5e-90 336.7 245 66.9
Lsat_1_v5_gn_5_53001 Lactuca sativa HOM05D007625 ORTHO05D009738 1.5e-90 336.7 238 69.3
Sp3g14890 Schrenkiella parvula HOM05D007625 ORTHO05D009738 2.0e-90 336.3 242 68.2
AL3G29430 Arabidopsis lyrata HOM05D007625 ORTHO05D009738 2.6e-90 335.9 242 66.9
Gohir.D09G240200 Gossypium hirsutum HOM05D007625 ORTHO05D009738 2.6e-90 335.9 246 67.1
Sabra10G0014200 Salix brachista HOM05D007625 ORTHO05D009738 2.6e-90 335.9 243 69.5
Aqoxy2G02997 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 3.4e-90 335.5 242 66.5
BraA05t22123Z Brassica rapa HOM05D007625 ORTHO05D009738 3.4e-90 335.5 262 64.5
Medtr4g119840 Medicago truncatula HOM05D007625 ORTHO05D009738 4.5e-90 335.1 243 67.1
Lalb_Chr13g0303611 Lupinus albus HOM05D007625 ORTHO05D009738 9.9e-90 334.0 243 67.1
BolC5t33727H Brassica oleracea HOM05D007625 ORTHO05D009738 2.2e-89 332.8 262 63.7
CSS0032939 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 2.9e-89 332.4 262 64.1
VMungo1215G1867 Vigna mungo HOM05D007625 ORTHO05D009738 2.9e-89 332.4 243 67.9
FvH4_4g17960 Fragaria vesca HOM05D007625 ORTHO05D009738 3.8e-89 332.0 245 66.1
MD13G1169000 Malus domestica HOM05D007625 ORTHO05D009738 3.8e-89 332.0 241 67.6
Glyma.07G247900 Glycine max HOM05D007625 ORTHO05D009738 4.9e-89 331.6 244 66.0
PGR031G0588 Punica granatum HOM05D007625 ORTHO05D009738 8.4e-89 330.9 243 66.3
BcaNung06438 Brassica carinata HOM05D007625 ORTHO05D009738 1.1e-88 330.5 237 67.1
Psat4g025880 Pisum sativum HOM05D007625 ORTHO05D009738 1.1e-88 330.5 243 65.8
Ca_21505_v3 Cicer arietinum L. HOM05D007625 ORTHO05D009738 2.4e-88 329.3 243 66.7
ECA240G3588 Erigeron canadensis HOM05D007625 ORTHO05D009738 3.2e-88 328.9 240 67.1
C05p49750 Brassica napus HOM05D007625 ORTHO05D009738 7.1e-88 327.8 253 65.6
Phvul.003G105100 Phaseolus vulgaris HOM05D007625 ORTHO05D009738 1.2e-87 327.0 244 66.0
Hund20557 Selenicereus undatus HOM05D007625 ORTHO05D009738 3.5e-87 325.5 242 68.2
FAN12G4294 Fragaria x ananassa HOM05D007625 ORTHO05D009738 4.6e-87 325.1 245 64.9
Potri.010G024900 Populus trichocarpa HOM05D007625 ORTHO05D009738 6.0e-87 324.7 234 69.2
PSO017G7039 Papaver somniferum HOM05D007625 ORTHO05D009738 1.0e-86 323.9 243 65.8
Rhsim02G0010500 Rhododendron simsii HOM05D007625 ORTHO05D009738 1.3e-86 323.6 226 70.4
HanXRQChr03g0080751 Helianthus annuus HOM05D007625 ORTHO05D009738 6.7e-86 321.2 243 63.4
DCAR_027078 Daucus carota HOM05D007625 ORTHO05D009738 3.3e-85 318.9 247 64.4
TPR.G3171 Trifolium pratense HOM05D007625 ORTHO05D009738 1.6e-84 316.6 245 62.9
Hma1.2p1_1567F.1_g291060 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 2.1e-84 316.2 211 73.0
Gorai.006G263200 Gossypium raimondii HOM05D007625 ORTHO05D009738 2.8e-84 315.8 228 67.1
AT3G16565 Arabidopsis thaliana HOM05D007625 ORTHO05D009738 6.2e-84 314.7 276 58.3
FAN17G2144 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.8e-83 313.2 271 59.4
SalBow5G0239 Salvia bowleyana HOM05D007625 ORTHO05D009738 9.0e-83 310.8 247 62.3
FAN12G1696 Fragaria x ananassa HOM05D007625 ORTHO05D009738 7.6e-82 307.8 238 63.4
Dinv44384 Davidia involucrata HOM05D007625 ORTHO05D005073 5.5e-80 301.6 239 63.6
vmacro15237 Vaccinium macrocarpon HOM05D007625 ORTHO05D009738 1.6e-79 300.1 241 63.9
Hma1.2p1_0078F.1_g040640 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 3.5e-79 298.9 211 70.6
ATR0796G164 Amborella trichopoda HOM05D007625 ORTHO05D009738 7.9e-79 297.7 243 61.3
Os01g0120400 Oryza sativa ssp. japonica HOM05D007625 ORTHO05D009738 2.8e-76 289.3 241 57.7
Pp3c1_7890 Physcomitrium patens HOM05D007625 ORTHO05D009738 2.2e-73 279.6 243 60.9
Eucgr.B01310 Eucalyptus grandis HOM05D007625 ORTHO05D009738 1.1e-72 277.3 228 61.4
Nn3g21433 Nelumbo nucifera HOM05D007625 ORTHO05D009738 4.2e-72 275.4 245 56.7
Lj3A816T27 Lonicera japonica HOM05D007625 ORTHO05D009738 3.0e-70 269.2 203 67.5
Lj3A819G38 Lonicera japonica HOM05D007625 ORTHO05D009738 9.0e-67 257.7 260 55.4
SMO002G0002 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 1.4e-62 243.8 243 50.6
SMO356G0461 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 3.0e-62 242.7 243 50.6
Cpa.g.sc16.167 Carica papaya HOM05D007625 ORTHO05D009738 3.9e-62 242.3 193 63.2
Aa31LG8G3700 Aethionema arabicum HOM05D007625 ORTHO05D009738 2.5e-61 239.6 233 56.2
Carub.0003s1629 Capsella rubella HOM05D007625 ORTHO05D009738 7.4e-61 238.0 160 69.4
AUR62035873 Chenopodium quinoa HOM05D007625 ORTHO05D009738 2.8e-60 236.1 194 62.4
CDE12G0709 Ceratophyllum demersum HOM05D007625 ORTHO05D009738 6.3e-60 235.0 245 51.8
AagrBONN_evm.TU.Sc2ySwM_228.2358 Anthoceros agrestis HOM05D007625 ORTHO05D009738 1.7e-57 226.9 185 59.5
Glyma.17G026200 Glycine max HOM05D007625 ORTHO05D009738 6.5e-57 224.9 342 41.5
Sc19g0005180 Simmondsia chinensis HOM05D007625 ORTHO05D009738 2.8e-52 209.5 242 48.8
EL10Ac3g06592 Beta vulgaris HOM05D007625 ORTHO05D009738 5.0e-49 198.7 242 46.7
Zm00001eb334800 Zea mays HOM05D007625 ORTHO05D009738 1.1e-45 187.6 179 53.1
MCO16G322 Micromonas commoda HOM05D007625 ORTHO05D009738 3.5e-42 176.0 233 43.8
unitig_0.g621 Utricularia gibba HOM05D007625 ORTHO05D009738 1.5e-29 134.0 154 50.0
BcaB03g15776 Brassica carinata HOM05D007625 ORTHO05D009738 2.3e-25 120.2 103 64.1
Hma1.2p1_0785F.1_g217410 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 4.4e-21 105.9 66 72.7
Cpa.g.c47082 Carica papaya HOM05D007625 ORTHO05D009738 2.5e-16 90.1 83 61.4
Medtr4g123440 Medicago truncatula HOM05D007625 ORTHO05D009738 2.3e-14 83.6 130 42.3
Aqoxy2G02999 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 3.1e-14 83.2 59 64.4
MD16G1169600 Malus domestica HOM05D007625 ORTHO05D009738 1.7e-12 77.4 105 42.9
Glyma.19G060100 Glycine max HOM05D007625 ORTHO05D009738 3.5e-10 69.7 82 48.8
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 8.6e-09 65.1 245 29.0
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 1.5e-08 64.3 238 27.3
Nn6g31779 Nelumbo nucifera HOM05D001816 ORTHO05D002001 1.9e-08 63.9 236 28.0
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 2.5e-08 63.5 233 26.2
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 3.3e-08 63.2 245 29.0
CiPaw.05G091200 Carya illinoinensis HOM05D001816 ORTHO05D002001 3.3e-08 63.2 234 28.2
BcaB05g22693 Brassica carinata HOM05D001816 ORTHO05D002001 4.3e-08 62.8 231 27.3
AL6G33900 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 5.6e-08 62.4 231 27.3
Haze_02022 Corylus avellana HOM05D001816 ORTHO05D002001 5.6e-08 62.4 229 27.1
BNapus_Darmor_BZH_scaffold_38p00390 Brassica napus HOM05D001816 ORTHO05D002001 7.3e-08 62.0 230 27.4
DCAR_022835 Daucus carota HOM05D001816 ORTHO05D002001 7.3e-08 62.0 239 28.9
AT5G22800 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 9.5e-08 61.6 236 28.0
SGA_v2.0_scaffold32G13329 Striga asiatica HOM05D001816 ORTHO05D002001 9.5e-08 61.6 236 28.4
BcaC03g13917 Brassica carinata HOM05D001816 ORTHO05D002001 1.2e-07 61.2 230 27.4
C02p11280 Brassica napus HOM05D001816 ORTHO05D002001 1.2e-07 61.2 230 27.4
BolC2t07196H Brassica oleracea HOM05D001816 ORTHO05D002001 1.2e-07 61.2 230 27.4
BraA02t05688Z Brassica rapa HOM05D001816 ORTHO05D002001 1.2e-07 61.2 230 27.4
vmacro17274 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 1.6e-07 60.8 244 28.7
Actinidia20551 Actinidia chinensis HOM05D001816 ORTHO05D002001 2.8e-07 60.1 221 28.5
Aqoxy6G01808 Aquilegia oxysepala HOM05D001816 ORTHO05D002001 2.8e-07 60.1 229 26.6
Carub.0006s2052 Capsella rubella HOM05D001816 ORTHO05D002001 2.8e-07 60.1 230 27.8
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 2.8e-07 60.1 233 26.2
Cfa005345 Carpinus fangiana HOM05D001816 ORTHO05D002001 3.6e-07 59.7 230 28.3
Eucgr.I01492 Eucalyptus grandis HOM05D001816 ORTHO05D002001 3.6e-07 59.7 232 27.6
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 3.6e-07 59.7 233 25.8
Thhalv10012575m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 4.7e-07 59.3 223 26.9
Lalb_Chr08g0246781 Lupinus albus HOM05D001816 ORTHO05D002001 4.7e-07 59.3 231 26.0
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 4.7e-07 59.3 233 25.3
CSS0006826 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 6.2e-07 58.9 241 28.6
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 6.2e-07 58.9 245 28.6
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 8.0e-07 58.5 252 26.6
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 8.0e-07 58.5 238 25.2
Lj9C403T6 Lonicera japonica HOM05D001816 ORTHO05D002001 8.0e-07 58.5 225 27.1
Pp3c27_7320 Physcomitrium patens HOM05D001816 ORTHO05D002001 8.0e-07 58.5 232 27.2
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 1.1e-06 58.2 252 26.6
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 1.1e-06 58.2 252 24.2
Dinv41898 Davidia involucrata HOM05D001816 ORTHO05D002001 1.1e-06 58.2 240 26.7
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 1.1e-06 58.2 245 26.9
PGR142G1779 Punica granatum HOM05D001816 ORTHO05D002001 1.4e-06 57.8 226 28.3
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 1.4e-06 57.8 233 26.2
Sabra09G0109800 Salix brachista HOM05D001816 ORTHO05D002001 1.8e-06 57.4 232 26.3
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 1.8e-06 57.4 245 26.5
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 2.3e-06 57.0 233 27.0
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 2.3e-06 57.0 233 27.0
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 2.3e-06 57.0 269 26.4
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 2.3e-06 57.0 233 25.8
TPR.G38581 Trifolium pratense HOM05D001816 ORTHO05D002001 2.3e-06 57.0 229 26.6
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 3.1e-06 56.6 240 26.7
Glyma.04G001600 Glycine max HOM05D001816 ORTHO05D002001 3.1e-06 56.6 229 27.1
Aa31LG2G15270 Aethionema arabicum HOM05D001816 ORTHO05D002001 4.0e-06 56.2 226 27.4
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 4.0e-06 56.2 231 25.1
Solyc01g111990.3 Solanum lycopersicum HOM05D001816 ORTHO05D002001 4.0e-06 56.2 232 28.0
Sopen01g054040 Solanum pennellii HOM05D001816 ORTHO05D002001 4.0e-06 56.2 232 28.0
FvH4_2g16070 Fragaria vesca HOM05D001816 ORTHO05D002001 5.2e-06 55.8 235 28.1
FAN24G0316 Fragaria x ananassa HOM05D001816 ORTHO05D002001 5.2e-06 55.8 235 28.1
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 5.2e-06 55.8 263 24.0
MCO11G803 Micromonas commoda HOM05D001816 ORTHO05D002001 5.2e-06 55.8 222 25.2
arahy.Tifrunner.gnm1.ann1.1BU1FJ Arachis hypogaea HOM05D001816 ORTHO05D002001 6.8e-06 55.5 229 27.1
arahy.Tifrunner.gnm1.ann1.X97WXI Arachis hypogaea HOM05D001816 ORTHO05D002001 6.8e-06 55.5 229 27.1
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 6.8e-06 55.5 267 24.7
Ca_15279_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 8.9e-06 55.1 234 26.1
MELO3C013645.2 Cucumis melo HOM05D001816 ORTHO05D002001 8.9e-06 55.1 241 28.6
FAN15G3397 Fragaria x ananassa HOM05D001816 ORTHO05D002001 8.9e-06 55.1 239 26.8
FAN20G1974 Fragaria x ananassa HOM05D001816 ORTHO05D002001 8.9e-06 55.1 226 27.4
Glyma.06G001100 Glycine max HOM05D001816 ORTHO05D002001 8.9e-06 55.1 229 26.6
MD10G1133000 Malus domestica HOM05D001816 ORTHO05D002001 8.9e-06 55.1 234 26.5
PRCOL_00002617 Prasinoderma coloniale HOM05D001816 ORTHO05D002001 8.9e-06 55.1 223 27.4


User provided reference genes

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