Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 0.0e+00 1899.0 1007 100.0
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 0.0e+00 1142.5 1029 63.8
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 0.0e+00 1127.5 1052 60.4
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 0.0e+00 1115.5 1017 60.7
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 0.0e+00 1105.9 1021 61.0
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 0.0e+00 1105.9 1112 58.7
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 0.0e+00 1104.4 1031 61.5
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 0.0e+00 1102.8 960 66.8
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 0.0e+00 1097.8 1008 60.9
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 0.0e+00 1090.5 1008 60.6
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1087.4 1021 60.1
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 0.0e+00 1081.6 1087 58.0
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 0.0e+00 1080.9 911 65.9
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 0.0e+00 1077.8 1083 57.8
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1077.0 1019 59.1
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 0.0e+00 1075.1 1053 60.4
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 6.9e-312 1073.5 1189 53.0
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 6.9e-312 1073.5 1060 57.8
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 2.1e-311 1072.4 1000 60.1
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 1.3e-308 1063.1 1066 58.9
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 2.2e-308 1062.4 1067 57.8
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 4.9e-308 1061.2 1014 59.7
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 5.4e-307 1057.7 994 60.8
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 3.0e-305 1052.0 1089 58.0
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 1.1e-304 1050.0 1018 58.3
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 1.1e-304 1050.0 1057 57.0
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 1.9e-304 1049.3 1099 57.1
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 6.2e-303 1044.3 1056 57.1
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 1.4e-302 1043.1 1124 56.4
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 1.2e-301 1040.0 1016 58.2
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 1.7e-300 1036.2 1019 59.9
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 1.4e-299 1033.1 1054 57.5
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 4.1e-299 1031.6 1020 58.1
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 9.2e-299 1030.4 1048 57.6
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.2e-298 1030.0 1080 57.4
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 2.7e-298 1028.9 1025 60.5
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 3.5e-298 1028.5 1020 58.0
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 5.1e-297 1024.6 1025 60.2
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 6.6e-297 1024.2 1020 57.7
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 1.1e-296 1023.5 1092 55.8
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 3.3e-296 1021.9 1020 58.4
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 4.3e-296 1021.5 1018 59.0
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 5.6e-296 1021.1 1024 59.4
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 9.5e-296 1020.4 1092 54.9
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 1.1e-294 1016.9 1024 59.3
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 2.0e-293 1012.7 1051 57.0
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 3.4e-293 1011.9 1086 55.1
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 4.4e-293 1011.5 1061 56.9
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 7.6e-293 1010.7 1061 56.8
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 2.2e-292 1009.2 1020 58.2
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 2.2e-292 1009.2 1080 55.9
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 5.4e-291 1004.6 1021 58.3
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 9.2e-291 1003.8 1045 56.7
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 1.3e-289 1000.0 1025 57.0
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 4.2e-283 978.4 1028 58.4
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 3.9e-281 971.8 1034 56.4
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 5.6e-280 968.0 1056 55.5
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 8.1e-279 964.1 1058 54.0
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 1.2e-277 960.3 1016 55.1
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 4.9e-276 954.9 826 64.0
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 2.4e-275 952.6 1007 56.6
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 9.3e-275 950.7 1032 55.7
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 6.0e-274 948.0 1011 58.8
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 2.5e-272 942.6 1104 51.4
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 2.5e-272 942.6 992 59.2
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.5e-272 942.6 1062 54.5
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 4.3e-272 941.8 992 58.3
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 1.4e-270 936.8 1043 54.9
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 1.2e-269 933.7 1031 55.3
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 7.6e-269 931.0 780 65.5
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 7.6e-269 931.0 1030 54.3
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 1.9e-267 926.4 1015 54.5
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 8.7e-265 917.5 1032 54.4
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 3.3e-264 915.6 1159 49.2
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 2.0e-261 906.4 1047 53.4
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 3.4e-261 905.6 1031 54.1
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 5.8e-261 904.8 1044 52.4
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 3.9e-257 892.1 1166 50.0
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 5.1e-257 891.7 992 56.0
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 6.3e-255 884.8 977 52.1
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 9.3e-251 870.9 1029 52.4
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 1.2e-250 870.5 1061 51.9
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 1.2e-250 870.5 1014 54.2
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 6.7e-249 864.8 1029 52.6
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 6.7e-249 864.8 1029 52.6
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 2.4e-246 856.3 1030 50.8
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 1.3e-244 850.5 1121 49.8
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 3.8e-244 849.0 1028 50.9
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 3.8e-244 849.0 898 57.9
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 4.2e-243 845.5 1030 51.5
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 9.7e-240 834.3 714 64.3
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 1.6e-234 817.0 1043 49.4
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 1.6e-234 817.0 1043 49.4
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 1.7e-228 797.0 977 50.5
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 1.5e-227 793.9 1037 49.5
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 5.5e-227 792.0 1037 49.4
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 4.0e-225 785.8 1042 50.0
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 5.2e-225 785.4 874 58.0
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.5e-224 783.9 598 69.6
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 2.7e-221 773.1 1026 49.2
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 2.7e-221 773.1 1026 49.2
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 3.8e-220 769.2 1026 48.8
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 4.2e-219 765.8 1033 50.9
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 5.5e-219 765.4 620 66.5
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 1.6e-210 737.3 1057 46.5
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 2.6e-208 729.9 1047 48.1
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 2.6e-208 729.9 1047 48.1
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 1.2e-202 711.1 828 51.3
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 8.9e-201 704.9 678 59.4
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 1.0e-196 691.4 831 50.2
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 6.0e-189 665.6 530 67.9
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 1.0e-188 664.8 835 48.1
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 5.6e-187 659.1 843 47.7
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 1.1e-179 634.8 820 49.3
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 9.5e-179 631.7 961 44.3
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 1.1e-177 628.2 433 75.8
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 1.9e-166 590.9 863 45.4
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 2.9e-159 567.0 1075 42.0
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 9.0e-153 545.4 954 41.3
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 7.6e-152 542.3 365 74.0
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 4.2e-150 536.6 364 74.5
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 3.0e-148 530.4 971 38.6
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 5.9e-136 489.6 494 58.1
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 1.4e-134 485.0 838 42.4
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 6.9e-129 466.1 1043 35.6
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 3.9e-124 450.3 353 69.1
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 5.7e-123 446.4 734 42.6
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 3.3e-115 420.6 358 61.5
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.1e-105 389.0 336 65.2
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 1.3e-98 365.5 478 47.5
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 5.9e-96 356.7 551 43.2
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.0e-91 341.7 374 54.5
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 2.3e-68 265.0 378 43.4
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 7.5e-67 260.0 256 53.5
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 2.7e-64 251.5 430 42.1
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 7.8e-64 250.0 543 43.1
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 7.8e-64 250.0 543 43.1
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 2.5e-62 245.0 271 56.1
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 1.5e-59 235.7 298 44.6
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 1.4e-52 212.6 156 68.6
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.2e-51 209.5 262 50.8
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 1.1e-49 203.0 609 29.2
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 2.1e-48 198.7 154 66.9
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.5e-46 192.6 330 43.0
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 4.3e-46 191.0 166 62.7
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.8e-44 185.7 129 69.0
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 1.2e-43 183.0 176 58.5
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.6e-43 181.8 154 59.1
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 2.2e-42 178.7 113 78.8
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 6.7e-39 167.2 136 67.6
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 9.6e-38 163.3 276 37.3
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 1.4e-33 149.4 100 72.0
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 1.6e-32 146.0 136 56.6
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 5.1e-31 141.0 398 37.9
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 2.2e-26 125.6 75 82.7
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 1.4e-25 122.9 75 81.3
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 1.9e-25 122.5 85 72.9
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 2.6e-19 102.1 465 29.0
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 2.1e-16 92.4 112 45.5
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 3.0e-15 88.6 50 80.0
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 6.7e-15 87.4 158 36.7
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 1.5e-14 86.3 84 52.4
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 2.5e-14 85.5 50 76.0
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 7.4e-14 84.0 104 52.9
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 1.0e-10 73.6 50 68.0
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 2.9e-10 72.0 89 43.8
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 1.1e-09 70.1 108 45.4
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 1.9e-09 69.3 60 58.3
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 4.7e-08 64.7 47 66.0


User provided reference genes

Program Settings