Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 0.0e+00 1639.4 825 100.0
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1077.0 825 65.7
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 6.0e-304 1047.3 794 66.2
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 5.1e-303 1044.3 817 65.0
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 2.8e-301 1038.5 816 64.3
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 4.7e-301 1037.7 815 63.8
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 1.8e-300 1035.8 816 64.5
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 3.7e-298 1028.1 816 63.6
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 3.2e-297 1025.0 818 63.4
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 1.2e-296 1023.1 816 64.0
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 3.0e-295 1018.5 816 63.8
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 8.6e-295 1016.9 789 65.5
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 1.9e-294 1015.8 818 63.1
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 2.5e-294 1015.4 818 63.0
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 3.3e-294 1015.0 821 63.3
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 9.6e-294 1013.4 817 62.7
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 8.9e-292 1006.9 821 63.6
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 8.9e-292 1006.9 815 63.7
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 2.6e-291 1005.4 820 62.2
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 5.8e-291 1004.2 817 63.8
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 1.3e-290 1003.0 814 62.0
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.2e-290 1002.3 817 63.8
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 3.8e-290 1001.5 816 63.5
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 1.9e-289 999.2 795 63.5
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.4e-289 998.8 817 63.5
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 9.3e-289 996.9 815 62.6
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 2.1e-288 995.7 806 64.5
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 3.5e-288 995.0 795 63.1
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 1.0e-287 993.4 839 60.8
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 5.6e-286 987.6 815 62.1
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 6.2e-285 984.2 828 60.9
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 8.1e-285 983.8 814 63.3
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.3e-284 981.1 817 63.2
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 2.0e-283 979.2 796 62.7
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 3.4e-283 978.4 814 61.9
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 4.4e-283 978.0 793 62.5
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.3e-282 976.5 732 67.1
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 1.3e-282 976.5 817 61.2
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 1.7e-282 976.1 815 61.3
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.1e-281 973.4 817 60.6
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 5.1e-279 964.5 817 61.0
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 5.6e-278 961.1 821 59.2
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 2.1e-277 959.1 811 61.5
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 2.8e-277 958.7 797 61.7
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 3.1e-276 955.3 824 58.6
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 9.0e-276 953.7 813 59.5
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 1.7e-274 949.5 820 60.1
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 2.9e-274 948.7 840 57.7
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 2.9e-274 948.7 796 59.4
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 2.9e-274 948.7 825 59.2
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 7.1e-273 944.1 806 61.3
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 7.1e-273 944.1 803 61.8
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 3.5e-272 941.8 814 60.0
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 3.5e-272 941.8 815 59.9
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 4.3e-270 934.9 806 60.3
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 1.6e-269 932.9 740 62.2
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.7e-269 931.8 817 60.7
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 1.4e-268 929.9 807 59.4
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 2.4e-268 929.1 810 59.1
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 1.5e-267 926.4 783 60.3
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 1.5e-267 926.4 827 58.4
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 4.5e-267 924.9 799 59.8
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 4.5e-267 924.9 828 58.6
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 1.3e-266 923.3 812 57.3
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 8.4e-266 920.6 738 63.6
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 3.0e-263 912.1 808 59.0
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 6.7e-263 911.0 879 56.4
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 5.3e-260 901.4 874 54.0
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 5.8e-259 897.9 820 56.2
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 2.1e-256 889.4 821 59.0
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 9.0e-252 874.0 817 55.6
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 1.2e-251 873.6 823 55.0
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 1.2e-251 873.6 818 55.5
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 1.0e-250 870.5 817 55.3
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 2.9e-250 869.0 822 55.5
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 3.2e-249 865.5 822 55.2
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 5.5e-249 864.8 823 54.9
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 7.2e-249 864.4 817 55.1
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 1.2e-248 863.6 819 54.8
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 5.7e-246 854.7 819 54.5
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 3.1e-244 849.0 845 53.3
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 3.1e-244 849.0 735 58.8
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 3.2e-241 839.0 843 55.5
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 9.7e-238 827.4 819 54.3
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 1.7e-237 826.6 816 53.4
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 3.8e-234 815.5 800 53.0
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 2.4e-220 769.6 603 64.3
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.0e-218 761.9 618 64.2
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.0e-218 761.9 618 64.2
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.5e-214 750.4 591 65.1
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.9e-210 736.1 620 62.6
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 7.5e-206 721.5 785 49.8
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 3.5e-203 712.6 619 60.1
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 1.6e-200 703.7 789 49.2
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 4.0e-191 672.5 716 49.3
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 3.2e-188 662.9 623 55.7
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 1.6e-187 660.6 828 45.3
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 6.4e-181 638.6 766 46.1
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 6.2e-168 595.5 720 46.0
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 9.0e-167 591.7 484 63.6
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 1.6e-152 544.3 544 53.9
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 5.3e-151 539.3 403 65.5
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 4.1e-143 513.1 466 55.6
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 2.0e-142 510.8 394 67.3
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 3.9e-138 496.5 552 48.4
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.3e-135 486.1 395 64.6
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 9.7e-129 465.3 807 36.3
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.1e-123 447.6 344 64.5
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 1.0e-122 445.3 339 64.3
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.8e-122 444.5 341 64.8
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 3.3e-121 440.3 778 35.1
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 1.5e-108 398.3 672 35.6
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 4.4e-105 386.7 475 48.4
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.4e-95 355.1 456 42.1
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 8.0e-83 312.8 276 58.7
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 1.1e-79 302.4 244 62.7
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 4.3e-76 290.4 294 54.8
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 2.7e-70 271.2 856 27.8
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.5e-68 265.4 323 45.2
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.1e-67 261.5 304 46.4
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 3.6e-67 260.8 377 45.9
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.4e-66 258.8 183 66.1
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.7e-62 244.6 198 62.1
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 3.9e-53 214.2 234 46.2
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 1.1e-50 206.1 176 63.1
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.4e-50 205.7 172 64.5
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 4.5e-49 200.7 172 64.5
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.4e-47 193.7 144 63.9
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 2.3e-45 188.3 233 50.2
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 3.0e-45 188.0 164 57.3
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 2.6e-41 174.9 237 45.6
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.7e-40 172.2 131 66.4
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.3e-37 161.8 214 40.7
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 1.0e-24 119.8 133 48.1
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 2.2e-19 102.1 114 43.0
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 9.1e-18 96.7 818 21.3
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 1.5e-12 79.3 400 21.8
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 1.7e-08 65.9 78 42.3
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 5.0e-08 64.3 96 35.4
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.0e-08 64.3 51 62.7


User provided reference genes

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