Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 1.4e-110 402.9 194 100.0
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 4.6e-90 334.7 194 80.9
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 1.7e-87 326.2 194 77.3
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 2.2e-87 325.9 194 78.4
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 4.8e-87 324.7 194 76.8
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 6.9e-86 320.9 195 76.9
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 1.5e-85 319.7 237 66.2
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 5.9e-85 317.8 200 74.5
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.9e-84 315.5 192 75.0
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 8.5e-84 313.9 204 73.0
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.5e-84 313.9 192 75.5
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 1.4e-81 306.6 188 74.5
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 5.7e-80 301.2 200 72.5
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 5.3e-78 294.7 194 68.0
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 7.0e-78 294.3 228 63.6
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 7.0e-78 294.3 228 63.6
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 9.1e-78 293.9 192 70.8
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 1.2e-77 293.5 200 71.5
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 2.0e-77 292.7 194 71.1
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 3.5e-77 292.0 193 68.4
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 4.5e-77 291.6 178 76.4
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 1.7e-76 289.7 200 70.0
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 1.7e-76 289.7 200 69.5
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 2.2e-76 289.3 192 69.3
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 2.2e-76 289.3 192 70.3
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 2.9e-76 288.9 200 69.5
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 3.8e-76 288.5 192 67.7
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 6.5e-76 287.7 193 67.4
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 7.2e-75 284.3 192 68.2
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 9.4e-75 283.9 184 73.4
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 2.1e-74 282.7 192 68.2
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 2.1e-74 282.7 194 63.4
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 3.6e-74 282.0 192 63.5
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 6.1e-74 281.2 199 68.3
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 1.4e-73 280.0 195 68.2
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 4.0e-73 278.5 199 67.8
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.1e-72 276.9 194 62.4
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 1.5e-72 276.6 234 60.7
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 5.7e-72 274.6 194 63.9
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 1.3e-71 273.5 177 70.1
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 1.7e-71 273.1 203 64.0
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 2.8e-71 272.3 194 61.3
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 4.8e-71 271.6 192 64.6
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 1.8e-70 269.6 199 66.3
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 2.4e-70 269.2 195 63.1
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 4.1e-70 268.5 193 65.3
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 1.2e-69 266.9 192 60.4
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 1.2e-69 266.9 223 57.8
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 5.9e-69 264.6 203 63.1
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 1.7e-68 263.1 194 66.0
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 2.2e-68 262.7 238 56.7
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 5.0e-68 261.5 194 58.8
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 6.5e-68 261.2 205 62.9
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 6.5e-68 261.2 205 62.9
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.5e-67 260.0 194 63.4
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 1.5e-67 260.0 191 67.0
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 2.5e-67 259.2 205 62.9
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 4.2e-67 258.5 201 63.2
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 4.2e-67 258.5 194 64.9
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 5.5e-67 258.1 194 63.4
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 7.2e-67 257.7 196 63.3
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 9.4e-67 257.3 194 63.4
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 1.2e-66 256.9 194 59.3
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 1.6e-66 256.5 193 56.5
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 2.7e-66 255.8 208 58.7
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 3.6e-66 255.4 194 65.5
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 6.1e-66 254.6 193 59.1
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 8.0e-66 254.2 193 63.7
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 1.0e-65 253.8 193 57.0
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 1.0e-65 253.8 193 57.0
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 1.0e-65 253.8 193 57.0
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 2.3e-65 252.7 178 65.2
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 3.0e-65 252.3 192 59.4
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 5.2e-65 251.5 208 56.7
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 8.8e-65 250.8 168 69.6
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 2.6e-64 249.2 198 57.6
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 2.6e-64 249.2 192 67.2
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 2.6e-64 249.2 207 59.9
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 1.3e-63 246.9 210 55.2
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 4.8e-63 245.0 208 57.2
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 4.8e-63 245.0 195 62.1
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 8.3e-63 244.2 207 59.9
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 1.1e-62 243.8 222 51.4
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 2.4e-62 242.7 182 58.8
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 1.6e-61 240.0 178 62.9
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 7.7e-61 237.7 192 58.9
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 5.0e-60 235.0 192 59.4
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 5.0e-60 235.0 261 46.7
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 3.2e-59 232.3 192 56.2
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 7.2e-59 231.1 192 58.9
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 7.2e-59 231.1 191 61.8
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 9.4e-59 230.7 194 56.7
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 1.4e-57 226.9 194 57.7
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 5.2e-57 224.9 192 51.6
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.2e-56 223.8 210 53.8
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 3.4e-56 222.2 193 56.0
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 1.3e-55 220.3 192 55.2
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 2.2e-55 219.5 192 54.7
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 3.7e-55 218.8 170 61.8
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 1.8e-54 216.5 192 51.6
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 7.7e-53 211.1 175 60.0
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 1.7e-52 209.9 192 50.0
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 5.0e-52 208.4 193 50.3
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 6.6e-52 208.0 135 76.3
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 1.5e-51 206.8 193 54.4
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 6.1e-50 201.4 192 45.8
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 5.2e-49 198.4 156 62.8
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 1.4e-46 190.3 162 60.5
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 2.5e-43 179.5 122 65.6
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 4.3e-43 178.7 132 67.4
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 4.7e-42 175.3 204 42.2
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 6.8e-41 171.4 127 61.4
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 1.3e-39 167.2 192 44.3
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 2.9e-39 166.0 192 46.4
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 9.2e-38 161.0 204 38.2
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 4.6e-37 158.7 130 60.0
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 1.7e-36 156.8 132 58.3
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 8.6e-36 154.5 98 72.4
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 1.6e-34 150.2 114 64.0
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 3.1e-33 146.0 199 43.2
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 8.3e-31 137.9 104 66.3
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.9e-30 136.7 138 52.9
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 1.2e-29 134.0 98 63.3
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 3.5e-29 132.5 94 68.1
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.6e-29 132.1 98 68.4
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 2.5e-27 126.3 94 53.2
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.5e-27 126.3 101 63.4
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.3e-25 119.8 101 62.4
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 9.9e-24 114.4 75 77.3
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 1.3e-23 114.0 70 77.1
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 1.7e-20 103.6 68 76.5
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.0e-20 102.8 71 66.2
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 3.9e-20 102.4 105 45.7
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 5.6e-19 98.6 68 64.7
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 7.3e-19 98.2 100 51.0
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 9.6e-19 97.8 102 45.1
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 2.4e-17 93.2 62 62.9
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.2e-16 90.9 66 57.6
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 1.5e-16 90.5 79 45.6
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 3.2e-14 82.8 63 60.3
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 2.3e-12 76.6 48 66.7
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 2.5e-11 73.2 155 31.6
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 7.3e-11 71.6 117 34.2
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.6e-10 70.5 47 61.7
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 6.2e-10 68.6 43 67.4
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 3.1e-09 66.2 41 70.7
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 6.9e-09 65.1 41 68.3
GSVIVG01018600001 Vitis vinifera HOM05D004774 ORTHO05D005514 6.9e-09 65.1 54 53.7
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 3.4e-08 62.8 109 38.5
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.5e-08 62.4 60 58.3
GSVIVG01034583001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.8e-08 62.0 52 51.9
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 6.4e-07 58.5 48 64.6
A03p16490 Brassica napus HOM05D037327 ORTHO05D005514 8.4e-07 58.2 34 61.8
MD02G1234500 Malus domestica HOM05D004774 ORTHO05D005514 1.4e-06 57.4 40 55.0
Haze_27325 Corylus avellana HOM05D004044 ORTHO05D004841 7.1e-06 55.1 102 27.5
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 7.1e-06 55.1 48 62.5


User provided reference genes

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