Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g11200 Coffea canephora HOM05D005381 ORTHO05D006674 9.7e-107 390.2 202 100.0
Dinv32755 Davidia involucrata HOM05D005381 ORTHO05D006674 5.0e-63 245.0 205 66.8
CSS0041314 Camellia sinensis var. sinensis HOM05D005381 ORTHO05D006674 3.3e-62 242.3 205 66.3
CSS0008106 Camellia sinensis var. sinensis HOM05D005381 ORTHO05D006674 9.5e-62 240.7 205 65.9
Haze_23841 Corylus avellana HOM05D005381 ORTHO05D006674 9.5e-62 240.7 209 65.1
CiPaw.14G080100 Carya illinoinensis HOM05D005381 ORTHO05D006674 2.3e-60 236.1 205 63.9
SalBow3G2811 Salvia bowleyana HOM05D005381 ORTHO05D006674 1.7e-58 229.9 204 61.8
Rhsim13G0093900 Rhododendron simsii HOM05D005381 ORTHO05D006674 3.7e-58 228.8 202 67.3
Peaxi162Scf00270g00915 Petunia axillaris HOM05D005381 ORTHO05D006674 6.4e-58 228.0 171 70.8
Gohir.D03G133900 Gossypium hirsutum HOM05D005381 ORTHO05D006674 8.3e-58 227.6 202 62.9
Gorai.003G141000 Gossypium raimondii HOM05D005381 ORTHO05D006674 4.1e-57 225.3 200 63.0
Nitab4.5_0000650g0150 Nicotiana tabacum HOM05D005381 ORTHO05D006674 4.1e-57 225.3 225 58.2
QL01p022359 Quercus lobata HOM05D005381 ORTHO05D006674 9.2e-57 224.2 204 62.3
Manes.04G021900 Manihot esculenta HOM05D005381 ORTHO05D006674 1.2e-56 223.8 205 62.4
vmacro03193 Vaccinium macrocarpon HOM05D005381 ORTHO05D006674 2.7e-56 222.6 205 61.0
Nitab4.5_0003701g0010 Nicotiana tabacum HOM05D005381 ORTHO05D006674 3.5e-56 222.2 225 56.4
Gohir.A03G034400 Gossypium hirsutum HOM05D005381 ORTHO05D006674 7.8e-56 221.1 210 60.0
Atru.chr3.3638 Acer truncatum HOM05D005381 ORTHO05D006674 1.3e-55 220.3 204 61.8
Oeu002863.1 Olea europaea HOM05D005381 ORTHO05D006674 1.7e-55 219.9 250 54.8
Thecc.09G339700 Theobroma cacao HOM05D005381 ORTHO05D006674 2.3e-55 219.5 205 63.4
Migut.D02217 Erythranthe guttata HOM05D005381 ORTHO05D006674 3.9e-55 218.8 201 62.2
SGA_v2.0_scaffold97G29223 Striga asiatica HOM05D005381 ORTHO05D006674 1.5e-54 216.9 204 61.3
Potri.009G013000 Populus trichocarpa HOM05D005381 ORTHO05D006674 4.3e-54 215.3 205 59.0
COL.COLO4_18342 Corchorus olitorius HOM05D005381 ORTHO05D006674 5.6e-54 214.9 207 59.9
DCAR_018815 Daucus carota HOM05D005381 ORTHO05D006674 9.5e-54 214.2 202 62.4
TPR.G15543 Trifolium pratense HOM05D005381 ORTHO05D006674 9.5e-54 214.2 202 59.9
Duzib168G0972 Durio zibethinus HOM05D005381 ORTHO05D006674 1.2e-53 213.8 205 62.0
Lalb_Chr01g0004271 Lupinus albus HOM05D005381 ORTHO05D006674 1.2e-53 213.8 226 56.6
Aqoxy5G04136 Aquilegia oxysepala HOM05D005381 ORTHO05D006674 2.8e-53 212.6 207 58.0
GSVIVG01025178001 Vitis vinifera HOM05D005381 ORTHO05D006674 3.6e-53 212.2 203 61.6
Medtr4g059550 Medicago truncatula HOM05D005381 ORTHO05D006674 6.2e-53 211.5 200 58.0
Prupe.6G100600 Prunus persica HOM05D005381 ORTHO05D006674 6.2e-53 211.5 203 60.6
Solyc11g069340.2 Solanum lycopersicum HOM05D005381 ORTHO05D006674 6.2e-53 211.5 240 53.3
MD03G1116700 Malus domestica HOM05D005381 ORTHO05D006674 8.1e-53 211.1 203 60.6
Cpa.g.sc898.4 Carica papaya HOM05D005381 ORTHO05D006674 1.1e-52 210.7 200 61.0
Ca_05253_v3 Cicer arietinum L. HOM05D005381 ORTHO05D006674 1.1e-52 210.7 202 59.4
CANSAT54G1801 Cannabis sativa HOM05D005381 ORTHO05D006674 1.4e-52 210.3 169 68.6
FvH4_3g32530 Fragaria vesca HOM05D005381 ORTHO05D006674 1.8e-52 209.9 209 60.3
FAN11G2629 Fragaria x ananassa HOM05D005381 ORTHO05D006674 1.8e-52 209.9 209 60.3
arahy.Tifrunner.gnm1.ann1.7B6ACI Arachis hypogaea HOM05D005381 ORTHO05D006674 2.3e-52 209.5 213 57.7
arahy.Tifrunner.gnm1.ann1.I533MD Arachis hypogaea HOM05D005381 ORTHO05D006674 2.3e-52 209.5 214 58.4
CAN.G631.20 Capsicum annuum HOM05D005381 ORTHO05D006674 4.0e-52 208.8 236 51.7
Aqoxy1G01625 Aquilegia oxysepala HOM05D005381 ORTHO05D006674 6.8e-52 208.0 207 57.0
Eucgr.J00934 Eucalyptus grandis HOM05D005381 ORTHO05D006674 6.8e-52 208.0 205 59.5
Sabra09G0008300 Salix brachista HOM05D005381 ORTHO05D006674 6.8e-52 208.0 213 57.3
VMungo1127G2043 Vigna mungo HOM05D005381 ORTHO05D006674 8.9e-52 207.6 142 75.4
Nn2g10776 Nelumbo nucifera HOM05D005381 ORTHO05D006674 1.2e-51 207.2 205 58.5
Glyma.12G068100 Glycine max HOM05D005381 ORTHO05D006674 2.0e-51 206.5 202 59.4
FAN21G0488 Fragaria x ananassa HOM05D005381 ORTHO05D006674 5.8e-51 204.9 205 59.5
MD11G1134700 Malus domestica HOM05D005381 ORTHO05D006674 9.9e-51 204.1 205 59.0
Sopen11g028060 Solanum pennellii HOM05D005381 ORTHO05D006674 1.7e-50 203.4 240 50.4
Ciclev10027798m.g Citrus clementina HOM05D005381 ORTHO05D006674 3.7e-50 202.2 204 58.3
Glyma.11G147200 Glycine max HOM05D005381 ORTHO05D006674 3.7e-50 202.2 202 57.9
ClCG02G021120 Citrullus lanatus HOM05D005381 ORTHO05D006674 1.4e-49 200.3 124 80.6
FAN25G3738 Fragaria x ananassa HOM05D005381 ORTHO05D006674 1.9e-49 199.9 210 60.0
AUR62024992 Chenopodium quinoa HOM05D005381 ORTHO05D006674 3.2e-49 199.1 203 57.1
Lsat_1_v5_gn_6_46081 Lactuca sativa HOM05D005381 ORTHO05D006674 7.1e-49 198.0 116 84.5
Phvul.011G078600 Phaseolus vulgaris HOM05D005381 ORTHO05D006674 7.1e-49 198.0 121 84.3
AUR62039627 Chenopodium quinoa HOM05D005381 ORTHO05D006674 9.2e-49 197.6 203 57.6
Hma1.2p1_1031F.1_g249980 Hydrangea macrophylla HOM05D005381 ORTHO05D006674 9.2e-49 197.6 131 77.9
TAR636G1890 Trochodendron aralioides HOM05D005381 ORTHO05D006674 9.2e-49 197.6 156 68.6
THA.LOC104800610 Tarenaya hassleriana HOM05D005381 ORTHO05D006674 1.6e-48 196.8 208 56.7
MBI10_g13354_MAGBIO Magnolia biondii HOM05D005381 ORTHO05D006674 2.1e-48 196.4 264 47.7
EL10Ac9g22502 Beta vulgaris HOM05D005381 ORTHO05D006674 3.5e-48 195.7 204 59.3
PSO339G1100 Papaver somniferum HOM05D005381 ORTHO05D006674 4.6e-48 195.3 208 55.8
Psat7g224200 Pisum sativum HOM05D005381 ORTHO05D006674 4.6e-48 195.3 202 56.4
PSO063G6738 Papaver somniferum HOM05D005381 ORTHO05D006674 7.8e-48 194.5 209 56.0
Lj3g0020359 Lotus japonicus HOM05D005381 ORTHO05D006674 1.0e-47 194.1 124 79.8
CsaV3_6G013880 Cucumis sativus L. HOM05D005381 ORTHO05D006674 2.3e-47 193.0 175 60.6
Aa31LG5G7770 Aethionema arabicum HOM05D005381 ORTHO05D006674 8.6e-47 191.0 205 54.6
Lalb_Chr19g0137331 Lupinus albus HOM05D005381 ORTHO05D006674 8.6e-47 191.0 138 71.7
RcHm_v2.0_Chr5g0059591 Rosa chinensis HOM05D005381 ORTHO05D006674 8.6e-47 191.0 210 56.2
HanXRQChr13g0403491 Helianthus annuus HOM05D005381 ORTHO05D006674 5.6e-46 188.3 142 71.8
ATR0115G037 Amborella trichopoda HOM05D005381 ORTHO05D006674 9.6e-46 187.6 245 50.6
HPP92_012655 Vanilla planifolia HOM05D005381 ORTHO05D006674 9.6e-46 187.6 170 60.0
PGR119G0002 Punica granatum HOM05D005381 ORTHO05D006674 1.6e-45 186.8 203 56.2
TAR636G1844 Trochodendron aralioides HOM05D005381 ORTHO05D006674 1.6e-45 186.8 150 66.7
MELO3C025769.2 Cucumis melo HOM05D005381 ORTHO05D006674 3.6e-45 185.7 161 64.6
CDE02G3164 Ceratophyllum demersum HOM05D005381 ORTHO05D006674 4.7e-45 185.3 226 50.9
Lj2A1029T35 Lonicera japonica HOM05D005381 ORTHO05D006674 4.7e-45 185.3 219 54.3
CDE08G1578 Ceratophyllum demersum HOM05D005381 ORTHO05D006674 6.2e-45 184.9 200 55.0
unitig_899.g14913 Utricularia gibba HOM05D005381 ORTHO05D006674 1.1e-44 184.1 162 63.0
ECA233G6150 Erigeron canadensis HOM05D005381 ORTHO05D006674 1.4e-44 183.7 204 53.4
Sed0021600 Sechium edule HOM05D005381 ORTHO05D006674 4.0e-44 182.2 127 71.7
SEGI_24136 Sequoiadendron giganteum HOM05D005381 ORTHO05D006674 3.4e-43 179.1 210 51.4
Zm00001eb089580 Zea mays HOM05D005381 ORTHO05D006674 1.3e-42 177.2 162 61.1
Ah.01g002840 Amaranthus hybridus HOM05D005381 ORTHO05D006674 1.7e-42 176.8 210 50.5
Hund08141 Selenicereus undatus HOM05D005381 ORTHO05D006674 2.9e-42 176.0 215 53.0
AL4G21570 Arabidopsis lyrata HOM05D005381 ORTHO05D006674 4.9e-42 175.3 208 54.3
BraA07t29607Z Brassica rapa HOM05D005381 ORTHO05D006674 6.4e-42 174.9 204 55.4
A07p19020 Brassica napus HOM05D005381 ORTHO05D006674 2.4e-41 172.9 204 53.4
C04p22930 Brassica napus HOM05D005381 ORTHO05D006674 4.2e-41 172.2 204 54.9
BolC4t23787H Brassica oleracea HOM05D005381 ORTHO05D006674 1.2e-40 170.6 204 51.5
Thhalv10016347m.g Eutrema salsugineum HOM05D005381 ORTHO05D006674 2.1e-40 169.9 202 53.0
Sp4g11270 Schrenkiella parvula HOM05D005381 ORTHO05D006674 4.6e-40 168.7 205 52.7
Carub.0004s0939 Capsella rubella HOM05D005381 ORTHO05D006674 7.8e-40 167.9 204 50.0
CARHR121390 Cardamine hirsuta HOM05D005381 ORTHO05D006674 3.0e-39 166.0 202 49.5
Actinidia07132 Actinidia chinensis HOM05D005381 ORTHO05D006674 2.5e-38 162.9 96 84.4
AT2G28450 Arabidopsis thaliana HOM05D005381 ORTHO05D006674 7.3e-38 161.4 207 51.7
Mapoly0078s0012 Marchantia polymorpha HOM05D005381 ORTHO05D006674 4.8e-37 158.7 168 54.2
SMO340G0204 Selaginella moellendorffii HOM05D005381 ORTHO05D006674 4.4e-35 152.1 129 62.0
CBR_g8736 Chara braunii HOM05D005381 ORTHO05D006674 2.4e-33 146.4 132 56.8
AagrBONN_evm.TU.Sc2ySwM_228.3233 Anthoceros agrestis HOM05D005381 ORTHO05D006674 9.3e-33 144.4 119 58.8
Pp3c10_16370 Physcomitrium patens HOM05D005381 ORTHO05D006674 1.2e-32 144.1 151 55.0
Actinidia24096 Actinidia chinensis HOM05D005381 ORTHO05D006674 6.0e-32 141.7 153 56.9
Duzib170G0010 Durio zibethinus HOM05D005381 ORTHO05D006674 2.6e-27 126.3 83 77.1
BcaC01g02792 Brassica carinata HOM05D005381 ORTHO05D006674 4.2e-25 119.0 117 57.3
C03p60310 Brassica napus HOM05D005381 ORTHO05D006674 4.2e-25 119.0 117 57.3
C03p60360 Brassica napus HOM05D005381 ORTHO05D006674 4.2e-25 119.0 117 57.3
C03p60390 Brassica napus HOM05D005381 ORTHO05D006674 4.2e-25 119.0 117 57.3
BolC3t18293H Brassica oleracea HOM05D005381 ORTHO05D006674 4.2e-25 119.0 117 57.3
BolC3t18299H Brassica oleracea HOM05D005381 ORTHO05D006674 4.2e-25 119.0 117 57.3
BolC3t18296H Brassica oleracea HOM05D005381 ORTHO05D006674 1.0e-23 114.4 118 56.8
FAN16G3073 Fragaria x ananassa HOM05D005381 ORTHO05D006674 1.0e-23 114.4 155 51.0
Thecc.03G060700 Theobroma cacao HOM05D005381 ORTHO05D006674 1.1e-20 104.4 67 79.1
Cre02.g101950 Chlamydomonas reinhardtii HOM05D005381 ORTHO05D006674 2.7e-16 89.7 187 33.2
BcaC01g02790 Brassica carinata HOM05D005381 ORTHO05D006674 3.0e-15 86.3 99 52.5
Actinidia28419 Actinidia chinensis HOM05D005381 ORTHO05D006674 9.6e-14 81.3 107 48.6
BcaC01g02789 Brassica carinata HOM05D005381 ORTHO05D006674 6.2e-13 78.6 101 50.5
Sc06g0010080 Simmondsia chinensis HOM05D005381 ORTHO05D006674 3.3e-06 56.2 105 37.1
VMungo1080G0616 Vigna mungo HOM05D005216 ORTHO05D006453 5.7e-06 55.5 110 33.6
Phvul.005G161800 Phaseolus vulgaris HOM05D005216 ORTHO05D006453 9.7e-06 54.7 110 33.6


User provided reference genes

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