Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 9.6e-136 486.9 255 100.0
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 8.7e-36 154.8 235 42.6
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 7.3e-35 151.8 236 41.9
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 4.8e-34 149.1 236 41.5
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 5.8e-32 142.1 240 40.4
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 1.3e-31 141.0 239 38.1
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 3.8e-31 139.4 239 37.7
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 4.3e-27 125.9 160 41.2
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 7.3e-27 125.2 231 36.8
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 8.1e-26 121.7 249 35.7
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 8.1e-26 121.7 166 41.0
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 1.8e-25 120.6 249 34.1
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 9.0e-25 118.2 264 32.2
HanXRQChr03g0089211 Helianthus annuus HOM05D004190 ORTHO05D004692 1.2e-24 117.9 232 34.5
Lsat_1_v5_gn_3_111560 Lactuca sativa HOM05D004190 ORTHO05D004692 6.4e-23 112.1 235 31.1
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 1.9e-22 110.5 229 34.5
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 3.5e-21 106.3 149 42.3
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 3.5e-21 106.3 222 36.9
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 1.3e-20 104.4 242 33.5
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 1.8e-20 104.0 241 32.4
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 1.8e-20 104.0 190 38.4
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 1.8e-20 104.0 246 34.1
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 2.3e-20 103.6 217 31.8
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 3.0e-20 103.2 162 35.2
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 3.0e-20 103.2 232 33.6
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 6.7e-20 102.1 222 34.2
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 6.7e-20 102.1 195 34.9
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 6.7e-20 102.1 219 34.7
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 8.7e-20 101.7 245 37.6
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 8.7e-20 101.7 217 34.1
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 8.7e-20 101.7 220 34.1
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 1.9e-19 100.5 193 35.2
Migut.N02470 Erythranthe guttata HOM05D004190 ORTHO05D004692 7.4e-19 98.6 160 40.6
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 7.4e-19 98.6 228 32.9
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 7.4e-19 98.6 238 33.2
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 7.4e-19 98.6 220 33.6
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 9.6e-19 98.2 222 34.2
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.3e-18 97.8 149 38.3
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 1.3e-18 97.8 150 46.7
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 1.6e-18 97.4 171 33.9
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 1.6e-18 97.4 211 39.3
ECA240G3776 Erigeron canadensis HOM05D004190 ORTHO05D000203 1.6e-18 97.4 218 35.8
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 1.6e-18 97.4 263 33.8
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 2.1e-18 97.1 152 36.8
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.1e-18 97.1 238 33.2
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 2.1e-18 97.1 264 28.8
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 2.8e-18 96.7 224 32.6
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 4.8e-18 95.9 159 36.5
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 6.2e-18 95.5 238 32.8
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 6.2e-18 95.5 181 35.4
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 8.1e-18 95.1 159 37.1
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.4e-17 94.4 149 36.9
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 1.4e-17 94.4 165 38.8
SGA_v2.0_scaffold177G39450 Striga asiatica HOM05D004190 ORTHO05D004692 1.4e-17 94.4 197 35.0
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 1.8e-17 94.0 216 34.7
CAN.G1733.1 Capsicum annuum HOM05D004190 ORTHO05D004692 3.1e-17 93.2 264 29.9
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 3.1e-17 93.2 215 33.0
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 4.0e-17 92.8 221 31.7
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 4.0e-17 92.8 221 31.7
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 5.3e-17 92.4 238 31.5
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 6.9e-17 92.0 165 33.3
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 9.0e-17 91.7 230 30.9
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 9.0e-17 91.7 168 36.3
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 1.2e-16 91.3 235 29.4
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.2e-16 91.3 221 31.2
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 1.5e-16 90.9 165 33.9
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 2.0e-16 90.5 221 29.0
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 2.0e-16 90.5 160 35.0
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 2.0e-16 90.5 160 35.0
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 2.0e-16 90.5 226 32.3
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 2.0e-16 90.5 160 35.0
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 2.0e-16 90.5 149 34.2
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 2.0e-16 90.5 245 31.4
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 2.6e-16 90.1 237 32.5
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.6e-16 90.1 215 31.6
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 4.5e-16 89.4 226 28.3
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 4.5e-16 89.4 229 31.4
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 5.8e-16 89.0 165 37.0
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 5.8e-16 89.0 219 33.8
Dinv08914 Davidia involucrata HOM05D004190 ORTHO05D004692 5.8e-16 89.0 133 37.6
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 7.6e-16 88.6 234 29.5
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 7.6e-16 88.6 255 29.4
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 7.6e-16 88.6 221 29.9
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 7.6e-16 88.6 254 32.7
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 1.3e-15 87.8 165 37.6
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 2.2e-15 87.0 193 34.2
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 2.9e-15 86.7 150 34.0
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 3.8e-15 86.3 173 30.1
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 4.9e-15 85.9 180 35.6
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 6.5e-15 85.5 221 32.6
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 1.1e-14 84.7 225 28.9
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 2.5e-14 83.6 220 29.1
Oeu002349.1 Olea europaea HOM05D004190 ORTHO05D004692 2.5e-14 83.6 121 43.8
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 2.5e-14 83.6 224 32.1
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 3.2e-14 83.2 245 29.4
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 3.2e-14 83.2 148 33.8
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 5.5e-14 82.4 223 30.9
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 5.5e-14 82.4 159 39.0
Dinv22804 Davidia involucrata HOM05D004190 ORTHO05D004692 5.5e-14 82.4 246 31.7
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 7.1e-14 82.0 152 33.6
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 9.3e-14 81.6 168 34.5
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 9.3e-14 81.6 236 30.1
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 1.2e-13 81.3 225 30.7
SGA_v2.0_scaffold295G47507 Striga asiatica HOM05D004190 ORTHO05D004692 1.6e-13 80.9 187 35.3
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 4.6e-13 79.3 145 37.9
PGSC0003DMG400006228 Solanum tuberosum HOM05D004190 ORTHO05D004692 4.6e-13 79.3 159 35.8
TWI31G1174 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 6.0e-13 79.0 108 41.7
unitig_8.g3659 Utricularia gibba HOM05D004190 ORTHO05D004692 6.0e-13 79.0 98 46.9
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 2.3e-12 77.0 161 31.7
Oeu002348.1 Olea europaea HOM05D004190 ORTHO05D004692 3.0e-12 76.6 132 34.1
CAN.G745.27 Capsicum annuum HOM05D004190 ORTHO05D004692 3.9e-12 76.3 130 43.1
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 3.9e-12 76.3 164 39.6
CAN.G1733.2 Capsicum annuum HOM05D004190 ORTHO05D004692 1.5e-11 74.3 176 33.5
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 1.9e-11 73.9 66 54.5
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 1.9e-11 73.9 132 34.1
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 1.9e-11 73.9 132 34.1
MELO3C020629.2 Cucumis melo HOM05D004190 ORTHO05D004692 2.5e-11 73.6 238 27.7
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 3.3e-11 73.2 144 36.1
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 4.3e-11 72.8 84 44.0
AUR62001782 Chenopodium quinoa HOM05D004190 ORTHO05D004692 5.7e-11 72.4 240 28.8
AUR62009570 Chenopodium quinoa HOM05D004190 ORTHO05D004692 5.7e-11 72.4 240 28.8
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 5.7e-11 72.4 176 29.0
DCAR_002216 Daucus carota HOM05D002742 ORTHO05D002959 9.6e-11 71.6 139 34.5
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 1.6e-10 70.9 165 27.9
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 1.6e-10 70.9 165 27.9
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 2.1e-10 70.5 172 27.9
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 2.1e-10 70.5 160 27.5
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 3.7e-10 69.7 152 34.2
CARHR155230 Cardamine hirsuta HOM05D004190 ORTHO05D004692 6.3e-10 68.9 193 28.0
Haze_24100 Corylus avellana HOM05D004190 ORTHO05D004692 8.2e-10 68.6 309 26.2
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 1.1e-09 68.2 120 41.7
CAN.G745.25 Capsicum annuum HOM05D004190 ORTHO05D004692 1.4e-09 67.8 133 35.3
QL01p031797 Quercus lobata HOM05D004190 ORTHO05D004692 1.8e-09 67.4 337 24.9
Sopen00g012630 Solanum pennellii HOM05D004190 ORTHO05D004692 2.4e-09 67.0 82 43.9
Sopen01g043570 Solanum pennellii HOM05D004190 ORTHO05D004692 2.4e-09 67.0 82 43.9
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 4.1e-09 66.2 221 25.8
CSS0021452 Camellia sinensis var. sinensis HOM05D004190 ORTHO05D004692 1.2e-08 64.7 120 35.0
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 2.6e-08 63.5 75 48.0
PSO384G2347 Papaver somniferum HOM05D066734 ORTHO05D004692 2.6e-08 63.5 87 46.0
Aqoxy4G00226 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 3.4e-08 63.2 92 38.0
Actinidia24234 Actinidia chinensis HOM05D004190 ORTHO05D004692 4.5e-08 62.8 121 36.4
PSO339G5001 Papaver somniferum HOM05D066734 ORTHO05D004692 5.8e-08 62.4 107 41.1
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 5.8e-08 62.4 101 37.6
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 7.6e-08 62.0 55 47.3
Sabra09G0021900 Salix brachista HOM05D004190 ORTHO05D004692 7.6e-08 62.0 207 29.5
PGSC0003DMG400042312 Solanum tuberosum HOM05D004190 ORTHO05D018124 7.6e-08 62.0 158 31.6
BcaB05g23553 Brassica carinata HOM05D004190 ORTHO05D004692 1.0e-07 61.6 146 33.6
SEGI_38205 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 1.3e-07 61.2 192 29.2
Solyc10g049990.1 Solanum lycopersicum HOM05D004190 ORTHO05D018124 1.7e-07 60.8 133 36.8
Phvul.002G155600 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 2.2e-07 60.5 89 39.3
Manes.01G173566 Manihot esculenta HOM05D065945 ORTHO05D004692 2.9e-07 60.1 85 38.8
SEGI_27640 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 2.9e-07 60.1 187 29.9
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 5.0e-07 59.3 68 45.6
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 5.0e-07 59.3 81 43.2
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 8.4e-07 58.5 65 52.3
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 1.1e-06 58.2 55 52.7
TWI09G1536 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.1e-06 58.2 120 31.7
GSVIVG01024953001 Vitis vinifera HOM05D004190 ORTHO05D004692 1.1e-06 58.2 72 38.9
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 1.4e-06 57.8 75 45.3
Lj1P258T42 Lonicera japonica HOM05D004190 ORTHO05D004692 1.9e-06 57.4 118 36.4
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 1.9e-06 57.4 81 42.0
FAN09G4791 Fragaria x ananassa HOM05D004190 ORTHO05D022494 2.5e-06 57.0 155 26.5
SEGI_01639 Sequoiadendron giganteum HOM05D016141 ORTHO05D017259 3.2e-06 56.6 83 41.0
SEGI_04034 Sequoiadendron giganteum HOM05D016141 ORTHO05D017259 3.2e-06 56.6 83 41.0
SEGI_13254 Sequoiadendron giganteum HOM05D016141 ORTHO05D017259 3.2e-06 56.6 83 41.0
SEGI_35066 Sequoiadendron giganteum HOM05D016141 ORTHO05D017259 3.2e-06 56.6 83 41.0
FAN14G3185 Fragaria x ananassa HOM05D022761 ORTHO05D022494 4.2e-06 56.2 150 26.7
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 5.5e-06 55.8 56 44.6
CDE06G0068 Ceratophyllum demersum HOM05D003520 ORTHO05D003332 5.5e-06 55.8 66 40.9
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 5.5e-06 55.8 58 50.0
FvH4_6g13651 Fragaria vesca HOM05D022761 ORTHO05D022494 5.5e-06 55.8 151 27.2
Gorai.001G110900 Gossypium raimondii HOM05D004190 ORTHO05D004692 5.5e-06 55.8 73 45.2
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 5.5e-06 55.8 129 32.6
PSO384G5141 Papaver somniferum HOM05D066660 ORTHO05D004692 5.5e-06 55.8 129 32.6
Aqoxy1G03565 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 7.2e-06 55.5 123 31.7
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 7.2e-06 55.5 65 44.6
Sopen10g021100 Solanum pennellii HOM05D004190 ORTHO05D018124 7.2e-06 55.5 147 34.0


User provided reference genes

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