Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g05930 Coffea canephora HOM05D003902 ORTHO05D005866 1.4e-37 159.1 76 100.0
Cc09_g09110 Coffea canephora HOM05D003902 ORTHO05D005866 4.4e-20 100.9 63 79.4
Cc00_g05410 Coffea canephora HOM05D003902 ORTHO05D005866 1.7e-19 99.0 63 77.8
TPR.G32793 Trifolium pratense HOM05D003902 ORTHO05D005866 8.3e-19 96.7 63 71.4
Glyma.07G047700 Glycine max HOM05D003902 ORTHO05D005866 1.4e-18 95.9 63 73.0
MELO3C009689.2 Cucumis melo HOM05D003902 ORTHO05D005866 7.1e-18 93.6 63 68.3
Sed0016671 Sechium edule HOM05D003902 ORTHO05D005866 7.1e-18 93.6 63 68.3
Ca_23480_v3 Cicer arietinum L. HOM05D003902 ORTHO05D005866 9.2e-18 93.2 63 68.3
ClCG10G008700 Citrullus lanatus HOM05D003902 ORTHO05D005866 1.2e-17 92.8 63 68.3
Glyma.16G016200 Glycine max HOM05D003902 ORTHO05D005866 1.2e-17 92.8 63 69.8
Nn068s42296 Nelumbo nucifera HOM05D003902 ORTHO05D005866 1.2e-17 92.8 63 71.4
Nn5g28264 Nelumbo nucifera HOM05D003902 ORTHO05D005866 1.2e-17 92.8 63 71.4
Psat4g164400 Pisum sativum HOM05D003902 ORTHO05D005866 1.2e-17 92.8 63 68.3
TAR374G1339 Trochodendron aralioides HOM05D003902 ORTHO05D005866 1.2e-17 92.8 63 71.4
Gohir.D07G137700 Gossypium hirsutum HOM05D003902 ORTHO05D005866 1.6e-17 92.4 63 68.3
Gorai.001G149800 Gossypium raimondii HOM05D003902 ORTHO05D005866 1.6e-17 92.4 63 68.3
Gohir.A07G133200 Gossypium hirsutum HOM05D003902 ORTHO05D005866 3.5e-17 91.3 63 66.7
CSS0017733 Camellia sinensis var. sinensis HOM05D003902 ORTHO05D005866 4.6e-17 90.9 63 69.8
CsaV3_3G039450 Cucumis sativus L. HOM05D003902 ORTHO05D005866 4.6e-17 90.9 63 66.7
Dinv40719 Davidia involucrata HOM05D003902 ORTHO05D005866 4.6e-17 90.9 63 68.3
Medtr8g023820 Medicago truncatula HOM05D003902 ORTHO05D005866 4.6e-17 90.9 63 68.3
Ciclev10020807m.g Citrus clementina HOM05D003902 ORTHO05D005866 6.0e-17 90.5 63 66.7
Oeu014509.1 Olea europaea HOM05D003902 ORTHO05D005866 6.0e-17 90.5 63 69.8
Sabra14G0079900 Salix brachista HOM05D003902 ORTHO05D005866 6.0e-17 90.5 63 69.8
ClCG10G016910 Citrullus lanatus HOM05D003902 ORTHO05D005866 7.8e-17 90.1 63 65.1
Dinv32654 Davidia involucrata HOM05D003902 ORTHO05D005866 1.0e-16 89.7 63 66.7
arahy.Tifrunner.gnm1.ann1.EQY875 Arachis hypogaea HOM05D003902 ORTHO05D005866 1.3e-16 89.4 63 68.3
arahy.Tifrunner.gnm1.ann1.GE61F7 Arachis hypogaea HOM05D003902 ORTHO05D005866 1.3e-16 89.4 63 68.3
Aqoxy4G02970 Aquilegia oxysepala HOM05D003902 ORTHO05D005866 3.0e-16 88.2 63 69.8
THA.LOC104825915 Tarenaya hassleriana HOM05D003902 ORTHO05D005866 3.0e-16 88.2 64 70.3
TWI09G0903 Tripterygium wilfordii HOM05D003902 ORTHO05D005866 3.0e-16 88.2 65 67.7
MD07G1164400 Malus domestica HOM05D003902 ORTHO05D005866 3.9e-16 87.8 63 66.7
Eucgr.A02139 Eucalyptus grandis HOM05D003902 ORTHO05D005866 5.1e-16 87.4 63 61.9
Prupe.2G203400 Prunus persica HOM05D003902 ORTHO05D005866 5.1e-16 87.4 63 65.1
MD01G1095300 Malus domestica HOM05D003902 ORTHO05D005866 6.6e-16 87.0 63 66.7
Peaxi162Scf00086g01414 Petunia axillaris HOM05D003902 ORTHO05D005866 8.6e-16 86.7 63 69.8
Phvul.003G017600 Phaseolus vulgaris HOM05D003902 ORTHO05D005866 1.1e-15 86.3 63 65.1
RcHm_v2.0_Chr1g0346391 Rosa chinensis HOM05D003902 ORTHO05D005866 1.1e-15 86.3 63 65.1
VMungo0331G0507 Vigna mungo HOM05D003902 ORTHO05D005866 1.1e-15 86.3 63 63.5
Aqoxy2G04194 Aquilegia oxysepala HOM05D003902 ORTHO05D005866 1.5e-15 85.9 63 66.7
RcHm_v2.0_Chr1g0361751 Rosa chinensis HOM05D003902 ORTHO05D005866 1.9e-15 85.5 63 65.1
RcHm_v2.0_Chr5g0055421 Rosa chinensis HOM05D003902 ORTHO05D005866 1.9e-15 85.5 63 65.1
FvH4_7g18100 Fragaria vesca HOM05D003902 ORTHO05D005866 2.5e-15 85.1 63 65.1
Atru.chr5.804 Acer truncatum HOM05D003902 ORTHO05D005866 3.3e-15 84.7 63 65.1
Lj3g0025959 Lotus japonicus HOM05D003902 ORTHO05D005866 3.3e-15 84.7 63 65.1
Lalb_Chr10g0100971 Lupinus albus HOM05D003902 ORTHO05D005866 3.3e-15 84.7 63 65.1
RcHm_v2.0_Chr5g0043791 Rosa chinensis HOM05D003902 ORTHO05D005866 3.3e-15 84.7 63 63.5
SalBow1G7347 Salvia bowleyana HOM05D003902 ORTHO05D005866 3.3e-15 84.7 63 66.7
SalBow1G8176 Salvia bowleyana HOM05D003902 ORTHO05D005866 3.3e-15 84.7 63 66.7
Sabra02G0132600 Salix brachista HOM05D003902 ORTHO05D005866 4.3e-15 84.3 66 65.2
MSTRG.9234 Avicennia marina HOM05D003902 ORTHO05D005866 7.3e-15 83.6 63 66.7
RcHm_v2.0_Chr2g0110161 Rosa chinensis HOM05D003902 ORTHO05D005866 7.3e-15 83.6 63 61.9
RcHm_v2.0_Chr7g0228521 Rosa chinensis HOM05D003902 ORTHO05D005866 7.3e-15 83.6 61 67.2
CDE04G0523 Ceratophyllum demersum HOM05D003902 ORTHO05D005866 9.5e-15 83.2 63 63.5
RcHm_v2.0_Chr5g0052991 Rosa chinensis HOM05D003902 ORTHO05D005866 9.5e-15 83.2 63 61.9
SGA_v2.0_scaffold16G07544 Striga asiatica HOM05D003902 ORTHO05D005866 1.6e-14 82.4 63 65.1
COL.COLO4_23075 Corchorus olitorius HOM05D003902 ORTHO05D005866 2.1e-14 82.0 63 61.9
Nitab4.5_0001819g0080 Nicotiana tabacum HOM05D003902 ORTHO05D005866 2.1e-14 82.0 63 65.1
PGR042G3296 Punica granatum HOM05D003902 ORTHO05D005866 2.1e-14 82.0 64 62.5
Lsat_1_v5_gn_7_76501 Lactuca sativa HOM05D003902 ORTHO05D005866 2.8e-14 81.6 63 60.3
RcHm_v2.0_Chr7g0204491 Rosa chinensis HOM05D003902 ORTHO05D005866 2.8e-14 81.6 63 61.9
Thecc.01G330300 Theobroma cacao HOM05D003902 ORTHO05D005866 2.8e-14 81.6 63 60.3
CAN.G546.26 Capsicum annuum HOM05D003902 ORTHO05D005866 3.6e-14 81.3 63 66.7
RcHm_v2.0_Chr1g0321231 Rosa chinensis HOM05D003902 ORTHO05D005866 4.7e-14 80.9 63 61.9
vmacro11191 Vaccinium macrocarpon HOM05D003902 ORTHO05D005866 4.7e-14 80.9 63 65.1
SGA_v2.0_scaffold82G26257 Striga asiatica HOM05D003902 ORTHO05D005866 6.2e-14 80.5 63 63.5
CANSAT80G0986 Cannabis sativa HOM05D003902 ORTHO05D005866 8.1e-14 80.1 63 63.5
DCAR_024001 Daucus carota HOM05D003902 ORTHO05D005866 8.1e-14 80.1 63 57.1
Thhalv10028775m.g Eutrema salsugineum HOM05D003902 ORTHO05D005866 8.1e-14 80.1 63 60.3
RcHm_v2.0_Chr4g0406331 Rosa chinensis HOM05D003902 ORTHO05D005866 1.1e-13 79.7 63 61.9
Aa31LG5G1280 Aethionema arabicum HOM05D003902 ORTHO05D005866 1.4e-13 79.3 63 58.7
unitig_747.g21998 Utricularia gibba HOM05D003902 ORTHO05D005866 1.4e-13 79.3 64 62.5
Duzib138G1363 Durio zibethinus HOM05D003902 ORTHO05D005866 1.8e-13 79.0 63 58.7
TAR375G0943 Trochodendron aralioides HOM05D003902 ORTHO05D005866 1.8e-13 79.0 60 60.0
HPP92_016601 Vanilla planifolia HOM05D003902 ORTHO05D005866 1.8e-13 79.0 63 60.3
Actinidia28870 Actinidia chinensis HOM05D003902 ORTHO05D005866 2.4e-13 78.6 63 61.9
ECA236G3056 Erigeron canadensis HOM05D003902 ORTHO05D005866 2.4e-13 78.6 64 65.6
Os06g0137500 Oryza sativa ssp. japonica HOM05D003902 ORTHO05D005866 2.4e-13 78.6 63 60.3
Potri.002G182600 Populus trichocarpa HOM05D003902 ORTHO05D005866 2.4e-13 78.6 63 61.9
RcHm_v2.0_Chr3g0479951 Rosa chinensis HOM05D003902 ORTHO05D005866 3.1e-13 78.2 63 61.9
Manes.07G093900 Manihot esculenta HOM05D003902 ORTHO05D005866 4.0e-13 77.8 63 60.3
SEGI_13893 Sequoiadendron giganteum HOM05D003902 ORTHO05D005866 4.0e-13 77.8 63 60.3
CiPaw.02G046000 Carya illinoinensis HOM05D003902 ORTHO05D005866 6.8e-13 77.0 63 60.3
MBI12_g05893_MAGBIO Magnolia biondii HOM05D003902 ORTHO05D005866 6.8e-13 77.0 68 57.4
Sp6g01470 Schrenkiella parvula HOM05D003902 ORTHO05D005866 6.8e-13 77.0 63 55.6
FAN06G2806 Fragaria x ananassa HOM05D003902 ORTHO05D005866 8.9e-13 76.6 74 55.4
EL10Ac1g00160 Beta vulgaris HOM05D003902 ORTHO05D005866 1.2e-12 76.3 63 60.3
FAN01G1310 Fragaria x ananassa HOM05D003902 ORTHO05D005866 1.2e-12 76.3 74 54.1
FAN10G0112 Fragaria x ananassa HOM05D003902 ORTHO05D005866 1.2e-12 76.3 74 54.1
FAN10G1292 Fragaria x ananassa HOM05D003902 ORTHO05D005866 1.2e-12 76.3 74 54.1
FAN03G0853 Fragaria x ananassa HOM05D003902 ORTHO05D005866 1.5e-12 75.9 74 54.1
FAN03G2357 Fragaria x ananassa HOM05D003902 ORTHO05D005866 1.5e-12 75.9 74 54.1
Ah.05g178790 Amaranthus hybridus HOM05D003902 ORTHO05D005866 2.0e-12 75.5 64 59.4
FAN06G3546 Fragaria x ananassa HOM05D003902 ORTHO05D005866 2.0e-12 75.5 74 54.1
FvH4_7g18130 Fragaria vesca HOM05D003902 ORTHO05D005866 2.6e-12 75.1 76 52.6
GSVIVG01022422001 Vitis vinifera HOM05D003902 ORTHO05D005866 2.6e-12 75.1 63 60.3
PSO384G4956 Papaver somniferum HOM05D003902 ORTHO05D005866 3.4e-12 74.7 63 54.0
RcHm_v2.0_Chr7g0219071 Rosa chinensis HOM05D003902 ORTHO05D005866 3.4e-12 74.7 74 54.1
GSVIVG01023391001 Vitis vinifera HOM05D003902 ORTHO05D005866 3.4e-12 74.7 63 58.7
Nitab4.5_0000329g0230 Nicotiana tabacum HOM05D003902 ORTHO05D005866 4.4e-12 74.3 72 56.9
Migut.C00356 Erythranthe guttata HOM05D003902 ORTHO05D005866 5.8e-12 73.9 63 61.9
C09p01200 Brassica napus HOM05D003902 ORTHO05D005866 1.3e-11 72.8 63 50.8
AUR62004576 Chenopodium quinoa HOM05D003902 ORTHO05D005866 1.3e-11 72.8 63 57.1
ATR0315G125 Amborella trichopoda HOM05D003902 ORTHO05D005866 1.7e-11 72.4 72 54.2
AT4G01560 Arabidopsis thaliana HOM05D003902 ORTHO05D005866 1.7e-11 72.4 63 57.1
Cfa003716 Carpinus fangiana HOM05D003902 ORTHO05D005866 1.7e-11 72.4 63 57.1
Haze_15766 Corylus avellana HOM05D003902 ORTHO05D005866 1.7e-11 72.4 63 57.1
Rhsim01G0181600 Rhododendron simsii HOM05D003902 ORTHO05D005866 2.2e-11 72.0 68 54.4
BraA09t35783Z Brassica rapa HOM05D003902 ORTHO05D005866 2.9e-11 71.6 63 50.8
Carub.0006s3564 Capsella rubella HOM05D003902 ORTHO05D005866 3.8e-11 71.2 63 52.4
Zm00001eb356330 Zea mays HOM05D003902 ORTHO05D005866 3.8e-11 71.2 63 57.1
BcaC04g24086 Brassica carinata HOM05D003902 ORTHO05D005866 4.9e-11 70.9 63 49.2
AUR62023522 Chenopodium quinoa HOM05D003902 ORTHO05D005866 4.9e-11 70.9 63 55.6
AL6G51780 Arabidopsis lyrata HOM05D003902 ORTHO05D005866 6.4e-11 70.5 63 58.7
A09p01120 Brassica napus HOM05D003902 ORTHO05D005866 6.4e-11 70.5 63 49.2
BolC9t53054H Brassica oleracea HOM05D003902 ORTHO05D005866 6.4e-11 70.5 63 49.2
Solyc11g066280.3 Solanum lycopersicum HOM05D003902 ORTHO05D005866 6.4e-11 70.5 63 58.7
Sopen11g026020 Solanum pennellii HOM05D003902 ORTHO05D005866 6.4e-11 70.5 63 58.7
PSO339G4022 Papaver somniferum HOM05D003902 ORTHO05D005866 1.1e-10 69.7 63 52.4
CARHR250110 Cardamine hirsuta HOM05D003902 ORTHO05D005866 1.4e-10 69.3 63 54.0
PGSC0003DMG400000409 Solanum tuberosum HOM05D003902 ORTHO05D005866 1.4e-10 69.3 63 58.7
BcaB01g02136 Brassica carinata HOM05D003902 ORTHO05D005866 4.1e-10 67.8 63 49.2
Mapoly0132s0039 Marchantia polymorpha HOM05D003902 ORTHO05D005866 4.1e-10 67.8 71 52.1
SMO244G0063 Selaginella moellendorffii HOM05D003902 ORTHO05D005866 4.1e-10 67.8 63 55.6
QL02p054986 Quercus lobata HOM05D003902 ORTHO05D005866 9.2e-10 66.6 37 75.7
Pp3c1_10040 Physcomitrium patens HOM05D003902 ORTHO05D005866 1.6e-09 65.9 69 50.7
Potri.014G108400 Populus trichocarpa HOM05D003902 ORTHO05D005866 2.7e-09 65.1 40 72.5
Peaxi162Scf00004g04214 Petunia axillaris HOM05D003902 ORTHO05D005866 4.6e-09 64.3 66 56.1
BcaB01g02370 Brassica carinata HOM05D003902 ORTHO05D005866 7.8e-09 63.5 86 39.5
Cre04.g218850 Chlamydomonas reinhardtii HOM05D003902 ORTHO05D005866 3.0e-08 61.6 66 50.0
HanXRQChr07g0187351 Helianthus annuus HOM05D003902 ORTHO05D005866 6.6e-08 60.5 63 50.8
Lj9A609T73 Lonicera japonica HOM05D003902 ORTHO05D005866 1.5e-07 59.3 28 85.7
PRCOL_00005239 Prasinoderma coloniale HOM05D003902 ORTHO05D005866 3.3e-07 58.2 62 53.2
RcHm_v2.0_Chr3g0493911 Rosa chinensis HOM05D003902 ORTHO05D005866 1.2e-06 56.2 38 60.5
CBR_g19066 Chara braunii HOM05D003902 ORTHO05D005866 8.1e-06 53.5 32 65.6


User provided reference genes

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