Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g04110 Coffea canephora HOM05D001971 ORTHO05D031294 8.6e-93 343.6 167 100.0
Cc09_g04360 Coffea canephora HOM05D001971 ORTHO05D031294 8.8e-29 131.0 104 67.3
Ca_30915_v3 Cicer arietinum L. HOM05D001971 ORTHO05D003057 6.1e-14 81.6 72 50.0
Aqoxy3G04201 Aquilegia oxysepala HOM05D001971 ORTHO05D014016 1.1e-10 70.9 112 36.6
Cc08_g15760 Coffea canephora HOM05D001971 ORTHO05D003057 2.7e-09 66.2 79 48.1
Rhsim04G0186100 Rhododendron simsii HOM05D001971 ORTHO05D003057 2.7e-09 66.2 61 49.2
CSS0015615 Camellia sinensis var. sinensis HOM05D001971 ORTHO05D003057 2.2e-08 63.2 79 46.8
CSS0019382 Camellia sinensis var. sinensis HOM05D001971 ORTHO05D003057 2.2e-08 63.2 79 46.8
PGSC0003DMG400009506 Solanum tuberosum HOM05D001971 ORTHO05D003057 2.2e-08 63.2 101 39.6
Ah.12g052270 Amaranthus hybridus HOM05D001971 ORTHO05D003057 2.9e-08 62.8 79 46.8
Ah.15g099390 Amaranthus hybridus HOM05D001971 ORTHO05D003057 2.9e-08 62.8 79 46.8
Mapoly0060s0046 Marchantia polymorpha HOM05D001971 ORTHO05D003057 2.9e-08 62.8 111 37.8
RcHm_v2.0_Chr5g0005001 Rosa chinensis HOM05D001971 ORTHO05D003057 2.9e-08 62.8 74 39.2
EL10Ac2g04666 Beta vulgaris HOM05D001971 ORTHO05D003057 3.8e-08 62.4 79 45.6
Cfa022853 Carpinus fangiana HOM05D001971 ORTHO05D003057 3.8e-08 62.4 101 34.7
AUR62013278 Chenopodium quinoa HOM05D001971 ORTHO05D003057 5.0e-08 62.0 79 45.6
HanXRQChr07g0191081 Helianthus annuus HOM05D001971 ORTHO05D003057 5.0e-08 62.0 111 38.7
Hma1.2p1_0714F.1_g207950 Hydrangea macrophylla HOM05D001971 ORTHO05D003057 5.0e-08 62.0 120 35.8
HanXRQChr17g0547431 Helianthus annuus HOM05D001971 ORTHO05D003057 6.5e-08 61.6 112 38.4
MCO05G210 Micromonas commoda HOM05D001971 ORTHO05D003057 6.5e-08 61.6 79 43.0
Actinidia04213 Actinidia chinensis HOM05D001971 ORTHO05D003057 8.5e-08 61.2 79 45.6
Aqoxy3G03882 Aquilegia oxysepala HOM05D001971 ORTHO05D003057 8.5e-08 61.2 101 34.7
PSO135G0234 Papaver somniferum HOM05D001971 ORTHO05D003057 8.5e-08 61.2 79 43.0
Peaxi162Scf00767g00011 Petunia axillaris HOM05D001971 ORTHO05D003057 8.5e-08 61.2 111 36.9
Peaxi162Scf01012g00015 Petunia axillaris HOM05D001971 ORTHO05D003057 8.5e-08 61.2 111 36.9
Hund11406 Selenicereus undatus HOM05D001971 ORTHO05D003057 8.5e-08 61.2 79 45.6
AagrBONN_evm.TU.Sc2ySwM_362.2720 Anthoceros agrestis HOM05D001971 ORTHO05D003057 1.1e-07 60.8 101 35.6
Aqoxy3G03886 Aquilegia oxysepala HOM05D001971 ORTHO05D031294 1.1e-07 60.8 127 30.7
AUR62011209 Chenopodium quinoa HOM05D001971 ORTHO05D003057 1.1e-07 60.8 79 45.6
FAN16G0982 Fragaria x ananassa HOM05D001971 ORTHO05D003057 1.1e-07 60.8 111 36.9
Peaxi162Scf00117g01315 Petunia axillaris HOM05D001971 ORTHO05D003057 1.1e-07 60.8 101 37.6
Sc08g0006750 Simmondsia chinensis HOM05D001971 ORTHO05D003057 1.1e-07 60.8 79 44.3
Lj6A594T94 Lonicera japonica HOM05D001971 ORTHO05D003057 1.5e-07 60.5 101 36.6
Os05g0289400 Oryza sativa ssp. japonica HOM05D001971 ORTHO05D003057 1.5e-07 60.5 111 37.8
PSO170G6049 Papaver somniferum HOM05D001971 ORTHO05D003057 1.5e-07 60.5 79 41.8
PGR119G1074 Punica granatum HOM05D001971 ORTHO05D003057 1.5e-07 60.5 65 52.3
Rhsim02G0241000 Rhododendron simsii HOM05D001971 ORTHO05D003057 1.5e-07 60.5 65 52.3
vmacro11445 Vaccinium macrocarpon HOM05D001971 ORTHO05D003057 1.5e-07 60.5 65 52.3
CAN.G2065.4 Capsicum annuum HOM05D001971 ORTHO05D003057 1.9e-07 60.1 101 37.6
Hma1.2p1_1680F.1_g297240 Hydrangea macrophylla HOM05D001971 ORTHO05D003057 1.9e-07 60.1 65 52.3
MD08G1044800 Malus domestica HOM05D001971 ORTHO05D003057 1.9e-07 60.1 102 36.3
Nitab4.5_0002788g0010 Nicotiana tabacum HOM05D001971 ORTHO05D003057 1.9e-07 60.1 101 37.6
Nitab4.5_0005112g0040 Nicotiana tabacum HOM05D001971 ORTHO05D003057 1.9e-07 60.1 101 37.6
TWI15G0909 Tripterygium wilfordii HOM05D001971 ORTHO05D003057 1.9e-07 60.1 79 43.0
Os10g0328700 Oryza sativa ssp. japonica HOM05D001971 ORTHO05D003057 2.5e-07 59.7 111 38.7
HPP92_013530 Vanilla planifolia HOM05D001971 ORTHO05D003057 2.5e-07 59.7 65 49.2
Zm00001eb051990 Zea mays HOM05D001971 ORTHO05D003057 2.5e-07 59.7 65 52.3
AT3G51110 Arabidopsis thaliana HOM05D001971 ORTHO05D003057 3.2e-07 59.3 149 30.2
DCAR_018244 Daucus carota HOM05D001971 ORTHO05D003057 3.2e-07 59.3 65 49.2
LjContig00310g0016293 Lotus japonicus HOM05D001971 ORTHO05D003057 3.2e-07 59.3 65 52.3
Prupe.5G115100 Prunus persica HOM05D001971 ORTHO05D003057 3.2e-07 59.3 79 44.3
Hund14237 Selenicereus undatus HOM05D001971 ORTHO05D003057 3.2e-07 59.3 111 37.8
CBR_g3016 Chara braunii HOM05D001971 ORTHO05D003057 4.2e-07 58.9 120 34.2
Ciclev10010580m.g Citrus clementina HOM05D001971 ORTHO05D003057 4.2e-07 58.9 79 43.0
FvH4_5g04070 Fragaria vesca HOM05D001971 ORTHO05D003057 4.2e-07 58.9 79 44.3
FAN04G1440 Fragaria x ananassa HOM05D001971 ORTHO05D003057 4.2e-07 58.9 79 44.3
FAN08G0988 Fragaria x ananassa HOM05D001971 ORTHO05D003057 4.2e-07 58.9 79 44.3
FAN13G0362 Fragaria x ananassa HOM05D001971 ORTHO05D003057 4.2e-07 58.9 79 44.3
FAN18G1794 Fragaria x ananassa HOM05D001971 ORTHO05D003057 4.2e-07 58.9 79 44.3
Hma1.2p1_0952F.1_g240900 Hydrangea macrophylla HOM05D001971 ORTHO05D003057 4.2e-07 58.9 57 52.6
Lj1g0024033 Lotus japonicus HOM05D001971 ORTHO05D003057 4.2e-07 58.9 79 44.3
Solyc12g056080.2 Solanum lycopersicum HOM05D001971 ORTHO05D003057 4.2e-07 58.9 101 36.6
Sopen12g028590 Solanum pennellii HOM05D001971 ORTHO05D003057 4.2e-07 58.9 101 36.6
PGSC0003DMG400005011 Solanum tuberosum HOM05D001971 ORTHO05D003057 4.2e-07 58.9 101 36.6
DCAR_027721 Daucus carota HOM05D001971 ORTHO05D003057 5.5e-07 58.5 84 36.9
Eucgr.D01708 Eucalyptus grandis HOM05D001971 ORTHO05D003057 5.5e-07 58.5 65 49.2
Nitab4.5_0000263g0140 Nicotiana tabacum HOM05D001971 ORTHO05D003057 5.5e-07 58.5 111 35.1
PSO266G0012 Papaver somniferum HOM05D001971 ORTHO05D003057 5.5e-07 58.5 110 36.4
SalBow8G3958 Salvia bowleyana HOM05D001971 ORTHO05D003057 5.5e-07 58.5 111 36.0
Solyc03g007560.2 Solanum lycopersicum HOM05D001971 ORTHO05D003057 5.5e-07 58.5 65 50.8
Sopen10g033170 Solanum pennellii HOM05D001971 ORTHO05D003057 5.5e-07 58.5 101 36.6
TAR375G0851 Trochodendron aralioides HOM05D001971 ORTHO05D003057 5.5e-07 58.5 65 50.8
ATR0559G071 Amborella trichopoda HOM05D001971 ORTHO05D003057 7.2e-07 58.2 81 40.7
CAN.G1057.10 Capsicum annuum HOM05D001971 ORTHO05D003057 7.2e-07 58.2 80 42.5
Lsat_1_v5_gn_6_11921 Lactuca sativa HOM05D001971 ORTHO05D003057 7.2e-07 58.2 84 36.9
Sopen03g003520 Solanum pennellii HOM05D001971 ORTHO05D003057 7.2e-07 58.2 101 36.6
Sopen03g003780 Solanum pennellii HOM05D001971 ORTHO05D003057 7.2e-07 58.2 101 36.6
Sopen03g003790 Solanum pennellii HOM05D001971 ORTHO05D003057 7.2e-07 58.2 101 36.6
Haze_08669 Corylus avellana HOM05D001971 ORTHO05D003057 9.4e-07 57.8 65 50.8
Dinv38858 Davidia involucrata HOM05D001971 ORTHO05D003057 9.4e-07 57.8 65 49.2
FvH4_3g03250 Fragaria vesca HOM05D001971 ORTHO05D003057 9.4e-07 57.8 65 50.8
FAN11G3033 Fragaria x ananassa HOM05D001971 ORTHO05D003057 9.4e-07 57.8 65 50.8
FAN21G2281 Fragaria x ananassa HOM05D001971 ORTHO05D003057 9.4e-07 57.8 65 50.8
MD06G1102000 Malus domestica HOM05D001971 ORTHO05D003057 9.4e-07 57.8 101 35.6
MD14G1121300 Malus domestica HOM05D001971 ORTHO05D003057 9.4e-07 57.8 79 43.0
Pp3c13_10420 Physcomitrium patens HOM05D001971 ORTHO05D003057 9.4e-07 57.8 79 41.8
Solyc03g007850.1 Solanum lycopersicum HOM05D001971 ORTHO05D003057 9.4e-07 57.8 101 36.6
arahy.Tifrunner.gnm1.ann1.H82VQF Arachis hypogaea HOM05D001971 ORTHO05D003057 1.2e-06 57.4 65 49.2
arahy.Tifrunner.gnm1.ann1.NMF6QG Arachis hypogaea HOM05D001971 ORTHO05D003057 1.2e-06 57.4 65 49.2
BcaNung04596 Brassica carinata HOM05D001971 ORTHO05D003057 1.2e-06 57.4 132 30.3
BraA02t09242Z Brassica rapa HOM05D001971 ORTHO05D003057 1.2e-06 57.4 65 46.2
CANSAT64G2235 Cannabis sativa HOM05D001971 ORTHO05D003057 1.2e-06 57.4 81 39.5
CDE09G1202 Ceratophyllum demersum HOM05D001971 ORTHO05D003057 1.2e-06 57.4 49 49.0
QL08p047146 Quercus lobata HOM05D001971 ORTHO05D003057 1.2e-06 57.4 83 38.6
RcHm_v2.0_Chr7g0195451 Rosa chinensis HOM05D001971 ORTHO05D003057 1.2e-06 57.4 79 43.0
Sed0006761 Sechium edule HOM05D001971 ORTHO05D003057 1.2e-06 57.4 86 37.2
TWI60G1540 Tripterygium wilfordii HOM05D001971 ORTHO05D003057 1.2e-06 57.4 65 47.7
MSTRG.13874 Avicennia marina HOM05D001971 ORTHO05D003057 1.6e-06 57.0 111 36.0
AUR62019806 Chenopodium quinoa HOM05D001971 ORTHO05D003057 1.6e-06 57.0 119 34.5
ECA233G4887 Erigeron canadensis HOM05D001971 ORTHO05D003057 1.6e-06 57.0 65 49.2
Thhalv10027664m.g Eutrema salsugineum HOM05D001971 ORTHO05D003057 1.6e-06 57.0 79 40.5
Lj8A210T85 Lonicera japonica HOM05D001971 ORTHO05D003057 1.6e-06 57.0 84 36.9
SEGI_17587 Sequoiadendron giganteum HOM05D001971 ORTHO05D003057 1.6e-06 57.0 65 46.2
PGSC0003DMG400028270 Solanum tuberosum HOM05D001971 ORTHO05D003057 1.6e-06 57.0 101 36.6
Aa31LG9G350 Aethionema arabicum HOM05D001971 ORTHO05D003057 2.1e-06 56.6 79 40.5
Aqoxy5G04153 Aquilegia oxysepala HOM05D001971 ORTHO05D003057 2.1e-06 56.6 65 47.7
BcaC03g18251 Brassica carinata HOM05D001971 ORTHO05D003057 2.1e-06 56.6 65 46.2
BcaC06g30666 Brassica carinata HOM05D001971 ORTHO05D003057 2.1e-06 56.6 82 39.0
C02p63240 Brassica napus HOM05D001971 ORTHO05D003057 2.1e-06 56.6 65 46.2
BolC2t12393H Brassica oleracea HOM05D001971 ORTHO05D003057 2.1e-06 56.6 65 46.2
Carub.0008s0193 Capsella rubella HOM05D001971 ORTHO05D003057 2.1e-06 56.6 79 39.2
Ciclev10019082m.g Citrus clementina HOM05D001971 ORTHO05D003057 2.1e-06 56.6 83 37.3
Migut.E01316 Erythranthe guttata HOM05D001971 ORTHO05D003057 2.1e-06 56.6 43 65.1
Os06g0523900 Oryza sativa ssp. japonica HOM05D001971 ORTHO05D003057 2.1e-06 56.6 65 49.2
SMO144G0002 Selaginella moellendorffii HOM05D001971 ORTHO05D003057 2.1e-06 56.6 111 34.2
GSVIVG01019497001 Vitis vinifera HOM05D001971 ORTHO05D003057 2.1e-06 56.6 79 41.8
AL3G24970 Arabidopsis lyrata HOM05D001971 ORTHO05D003057 2.7e-06 56.2 79 39.2
Hma1.2p1_1719F.1_g299200 Hydrangea macrophylla HOM05D001971 ORTHO05D013166 2.7e-06 56.2 85 38.8
BcaB02g07880 Brassica carinata HOM05D001971 ORTHO05D003057 3.6e-06 55.8 79 39.2
BcaB06g27667 Brassica carinata HOM05D001971 ORTHO05D003057 3.6e-06 55.8 79 39.2
BcaC08g44554 Brassica carinata HOM05D001971 ORTHO05D003057 3.6e-06 55.8 79 39.2
BcaNung04599 Brassica carinata HOM05D001971 ORTHO05D003057 3.6e-06 55.8 79 39.2
A04p14940 Brassica napus HOM05D001971 ORTHO05D003057 3.6e-06 55.8 79 39.2
A07p20900 Brassica napus HOM05D001971 ORTHO05D003057 3.6e-06 55.8 79 39.2
C06p20190 Brassica napus HOM05D001971 ORTHO05D002188 3.6e-06 55.8 79 39.2
BolC6t37200H Brassica oleracea HOM05D001971 ORTHO05D003057 3.6e-06 55.8 79 39.2
BraA04t17136Z Brassica rapa HOM05D001971 ORTHO05D003057 3.6e-06 55.8 79 39.2
BraA07t29777Z Brassica rapa HOM05D001971 ORTHO05D003057 3.6e-06 55.8 79 39.2
Migut.E01234 Erythranthe guttata HOM05D001971 ORTHO05D003057 3.6e-06 55.8 111 36.9
Lalb_Chr09g0320691 Lupinus albus HOM05D001971 ORTHO05D003057 3.6e-06 55.8 111 36.0
Prupe.6G139700 Prunus persica HOM05D001971 ORTHO05D003057 3.6e-06 55.8 79 41.8
Sabra01G0070400 Salix brachista HOM05D001971 ORTHO05D003057 3.6e-06 55.8 83 37.3
Sp7g00320 Schrenkiella parvula HOM05D001971 ORTHO05D003057 3.6e-06 55.8 79 39.2
Thecc.03G293000 Theobroma cacao HOM05D001971 ORTHO05D003057 3.6e-06 55.8 83 37.3
Atru.chr9.2045 Acer truncatum HOM05D001971 ORTHO05D003057 4.7e-06 55.5 83 37.3
AL7G47490 Arabidopsis lyrata HOM05D001971 ORTHO05D003057 4.7e-06 55.5 79 39.2
BcaC02g08918 Brassica carinata HOM05D001971 ORTHO05D003057 4.7e-06 55.5 79 38.0
A03p52800 Brassica napus HOM05D001971 ORTHO05D003057 4.7e-06 55.5 81 39.5
C04p49130 Brassica napus HOM05D001971 ORTHO05D003057 4.7e-06 55.5 79 38.0
BolC4t26497H Brassica oleracea HOM05D001971 ORTHO05D003057 4.7e-06 55.5 79 38.0
Carub.0007s3361 Capsella rubella HOM05D001971 ORTHO05D003057 4.7e-06 55.5 79 39.2
Cpa.g.sc122.38 Carica papaya HOM05D001971 ORTHO05D003057 4.7e-06 55.5 84 35.7
Duzib084G0522 Durio zibethinus HOM05D001971 ORTHO05D003057 4.7e-06 55.5 83 37.3
Duzib205G0632 Durio zibethinus HOM05D001971 ORTHO05D003057 4.7e-06 55.5 83 37.3
Manes.02G012700 Manihot esculenta HOM05D001971 ORTHO05D003057 4.7e-06 55.5 83 37.3
Manes.02G012800 Manihot esculenta HOM05D001971 ORTHO05D003057 4.7e-06 55.5 83 37.3
Peaxi162Scf00074g01217 Petunia axillaris HOM05D001971 ORTHO05D003057 4.7e-06 55.5 134 32.1
Potri.001G094400 Populus trichocarpa HOM05D001971 ORTHO05D003057 4.7e-06 55.5 83 37.3
Sopen01g025820 Solanum pennellii HOM05D001971 ORTHO05D003057 4.7e-06 55.5 108 35.2
Aa31LG4G820 Aethionema arabicum HOM05D001971 ORTHO05D003057 6.1e-06 55.1 135 29.6
Aqoxy1G02056 Aquilegia oxysepala HOM05D001971 ORTHO05D003057 6.1e-06 55.1 79 43.0
AL8G12490 Arabidopsis lyrata HOM05D001971 ORTHO05D003057 6.1e-06 55.1 79 39.2
AT5G45990 Arabidopsis thaliana HOM05D001971 ORTHO05D003057 6.1e-06 55.1 79 39.2
CARHR087800 Cardamine hirsuta HOM05D001971 ORTHO05D003057 6.1e-06 55.1 79 39.2
CARHR212800 Cardamine hirsuta HOM05D001971 ORTHO05D003057 6.1e-06 55.1 79 39.2
COL.COLO4_21720 Corchorus olitorius HOM05D001971 ORTHO05D003057 6.1e-06 55.1 83 37.3
QL04p045959 Quercus lobata HOM05D001971 ORTHO05D003057 6.1e-06 55.1 83 37.3
SGA_v2.0_scaffold111G31430 Striga asiatica HOM05D001971 ORTHO05D003057 6.1e-06 55.1 111 34.2
arahy.Tifrunner.gnm1.ann1.99FJVY Arachis hypogaea HOM05D001971 ORTHO05D003057 8.0e-06 54.7 65 46.2
arahy.Tifrunner.gnm1.ann1.BY6BY7 Arachis hypogaea HOM05D001971 ORTHO05D003057 8.0e-06 54.7 65 46.2
arahy.Tifrunner.gnm1.ann1.J8J1D7 Arachis hypogaea HOM05D001971 ORTHO05D003057 8.0e-06 54.7 65 47.7
C07p51230 Brassica napus HOM05D001971 ORTHO05D003057 8.0e-06 54.7 82 39.0
Cfa020722 Carpinus fangiana HOM05D001971 ORTHO05D003057 8.0e-06 54.7 111 35.1
CiPaw.07G046600 Carya illinoinensis HOM05D001971 ORTHO05D003057 8.0e-06 54.7 83 37.3
ClCG09G017570 Citrullus lanatus HOM05D001971 ORTHO05D003057 8.0e-06 54.7 83 37.3
Haze_26397 Corylus avellana HOM05D001971 ORTHO05D014016 8.0e-06 54.7 84 38.1
MELO3C004833.2 Cucumis melo HOM05D001971 ORTHO05D003057 8.0e-06 54.7 83 37.3
CsaV3_1G014350 Cucumis sativus L. HOM05D001971 ORTHO05D003057 8.0e-06 54.7 83 37.3
Thhalv10024572m.g Eutrema salsugineum HOM05D001971 ORTHO05D003057 8.0e-06 54.7 79 39.2
Oeu017334.1 Olea europaea HOM05D001971 ORTHO05D003057 8.0e-06 54.7 83 36.1
Pp3c3_10720 Physcomitrium patens HOM05D001971 ORTHO05D003057 8.0e-06 54.7 79 39.2
Potri.003G137200 Populus trichocarpa HOM05D001971 ORTHO05D003057 8.0e-06 54.7 83 37.3
Sabra03G0098700 Salix brachista HOM05D001971 ORTHO05D003057 8.0e-06 54.7 83 37.3
Sed0007558 Sechium edule HOM05D001971 ORTHO05D003057 8.0e-06 54.7 83 37.3
TPR.G6076 Trifolium pratense HOM05D001971 ORTHO05D003057 8.0e-06 54.7 79 40.5


User provided reference genes

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