Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g02190 Coffea canephora HOM05D001716 ORTHO05D004234 1.8e-41 172.2 87 100.0
MSTRG.18657 Avicennia marina HOM05D001716 ORTHO05D004234 2.9e-15 85.1 67 70.1
CSS0009123 Camellia sinensis var. sinensis HOM05D001716 ORTHO05D004234 2.9e-15 85.1 67 70.1
CSS0024984 Camellia sinensis var. sinensis HOM05D001716 ORTHO05D004234 2.9e-15 85.1 67 70.1
Rhsim01G0217300 Rhododendron simsii HOM05D001716 ORTHO05D004234 2.9e-15 85.1 67 70.1
SGA_v2.0_scaffold196G40980 Striga asiatica HOM05D001716 ORTHO05D004234 2.9e-15 85.1 67 70.1
SGA_v2.0_scaffold7G04105 Striga asiatica HOM05D001716 ORTHO05D004234 2.9e-15 85.1 67 70.1
Lj2A1029T33 Lonicera japonica HOM05D001716 ORTHO05D004234 3.8e-15 84.7 67 68.7
Solyc11g069370.3 Solanum lycopersicum HOM05D001716 ORTHO05D004234 3.8e-15 84.7 67 67.2
Sopen11g028090 Solanum pennellii HOM05D001716 ORTHO05D004234 3.8e-15 84.7 67 67.2
PGSC0003DMG400008103 Solanum tuberosum HOM05D001716 ORTHO05D004234 3.8e-15 84.7 67 67.2
Actinidia03732 Actinidia chinensis HOM05D001716 ORTHO05D004234 6.4e-15 84.0 67 68.7
Actinidia24098 Actinidia chinensis HOM05D001716 ORTHO05D004234 6.4e-15 84.0 67 68.7
arahy.Tifrunner.gnm1.ann1.07RPJW Arachis hypogaea HOM05D001716 ORTHO05D004234 6.4e-15 84.0 67 68.7
arahy.Tifrunner.gnm1.ann1.K86VTF Arachis hypogaea HOM05D001716 ORTHO05D004234 6.4e-15 84.0 67 68.7
Dinv32751 Davidia involucrata HOM05D001716 ORTHO05D004234 6.4e-15 84.0 52 80.8
Glyma.07G019000 Glycine max HOM05D001716 ORTHO05D004234 6.4e-15 84.0 67 68.7
Glyma.08G204200 Glycine max HOM05D001716 ORTHO05D004234 6.4e-15 84.0 67 68.7
Lalb_Chr01g0013001 Lupinus albus HOM05D001716 ORTHO05D004234 6.4e-15 84.0 67 68.7
Os01g0837500 Oryza sativa ssp. japonica HOM05D001716 ORTHO05D004234 6.4e-15 84.0 52 82.7
Os07g0178900 Oryza sativa ssp. japonica HOM05D001716 ORTHO05D004234 6.4e-15 84.0 52 82.7
HPP92_018992 Vanilla planifolia HOM05D001716 ORTHO05D004234 6.4e-15 84.0 67 68.7
Zm00001eb208840 Zea mays HOM05D001716 ORTHO05D004234 6.4e-15 84.0 52 82.7
Zm00001eb231050 Zea mays HOM05D001716 ORTHO05D004234 6.4e-15 84.0 52 82.7
Oeu030180.1 Olea europaea HOM05D001716 ORTHO05D004234 8.4e-15 83.6 67 68.7
Peaxi162Scf00270g00813 Petunia axillaris HOM05D001716 ORTHO05D004234 8.4e-15 83.6 67 67.2
Cc01_g11170 Coffea canephora HOM05D001716 ORTHO05D004234 1.1e-14 83.2 67 68.7
Migut.L01693 Erythranthe guttata HOM05D001716 ORTHO05D004234 1.1e-14 83.2 67 68.7
MSTRG.21126 Avicennia marina HOM05D001716 ORTHO05D004234 1.9e-14 82.4 67 67.2
MBI18_g19079_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D004234 1.9e-14 82.4 67 67.2
Nitab4.5_0000650g0210 Nicotiana tabacum HOM05D001716 ORTHO05D004234 1.9e-14 82.4 67 67.2
PGSC0003DMG402016772 Solanum tuberosum HOM05D001716 ORTHO05D004234 1.9e-14 82.4 67 67.2
ClCG10G015440 Citrullus lanatus HOM05D001716 ORTHO05D004234 2.4e-14 82.0 67 67.2
MELO3C009838.2 Cucumis melo HOM05D001716 ORTHO05D004234 2.4e-14 82.0 67 67.2
CsaV3_3G041050 Cucumis sativus L. HOM05D001716 ORTHO05D004234 2.4e-14 82.0 67 67.2
Potri.004G199100 Populus trichocarpa HOM05D001716 ORTHO05D004234 2.4e-14 82.0 67 67.2
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 2.4e-14 82.0 67 67.2
Sed0005678 Sechium edule HOM05D001716 ORTHO05D004234 2.4e-14 82.0 67 67.2
vmacro14441 Vaccinium macrocarpon HOM05D001716 ORTHO05D004234 2.4e-14 82.0 67 67.2
GSVIVG01025181001 Vitis vinifera HOM05D001716 ORTHO05D004234 2.4e-14 82.0 67 65.7
Aqoxy3G01288 Aquilegia oxysepala HOM05D001716 ORTHO05D004234 3.2e-14 81.6 67 65.7
Lsat_1_v5_gn_2_98340 Lactuca sativa HOM05D001716 ORTHO05D004234 3.2e-14 81.6 67 67.2
Lj1C191T4 Lonicera japonica HOM05D001716 ORTHO05D004234 3.2e-14 81.6 65 69.2
Manes.04G001300 Manihot esculenta HOM05D001716 ORTHO05D004234 3.2e-14 81.6 67 67.2
Phvul.010G148200 Phaseolus vulgaris HOM05D001716 ORTHO05D004234 3.2e-14 81.6 67 67.2
CAN.G631.23 Capsicum annuum HOM05D001716 ORTHO05D004234 4.2e-14 81.3 67 65.7
HanXRQChr14g0452881 Helianthus annuus HOM05D001716 ORTHO05D004234 4.2e-14 81.3 67 67.2
Sed0012939 Sechium edule HOM05D001716 ORTHO05D004234 4.2e-14 81.3 52 78.8
unitig_747.g21999 Utricularia gibba HOM05D001716 ORTHO05D004234 4.2e-14 81.3 67 67.2
Eucgr.J00524 Eucalyptus grandis HOM05D001716 ORTHO05D004234 5.4e-14 80.9 67 65.7
Nn3g16472 Nelumbo nucifera HOM05D001716 ORTHO05D004234 5.4e-14 80.9 67 65.7
TAR623G1135 Trochodendron aralioides HOM05D001716 ORTHO05D004234 5.4e-14 80.9 67 65.7
Nn4g22340 Nelumbo nucifera HOM05D001716 ORTHO05D004234 7.1e-14 80.5 67 64.2
Solyc06g062350.4 Solanum lycopersicum HOM05D001716 ORTHO05D004234 7.1e-14 80.5 67 65.7
Sopen06g021570 Solanum pennellii HOM05D001716 ORTHO05D004234 7.1e-14 80.5 67 65.7
CANSAT01G3043 Cannabis sativa HOM05D001716 ORTHO05D004234 9.2e-14 80.1 67 65.7
Ca_15874_v3 Cicer arietinum L. HOM05D001716 ORTHO05D004234 9.2e-14 80.1 67 65.7
FvH4_3g34140 Fragaria vesca HOM05D001716 ORTHO05D004234 9.2e-14 80.1 67 65.7
FAN11G1436 Fragaria x ananassa HOM05D001716 ORTHO05D004234 9.2e-14 80.1 67 65.7
Gohir.A05G079400 Gossypium hirsutum HOM05D001716 ORTHO05D004234 9.2e-14 80.1 67 65.7
Gohir.A09G097100 Gossypium hirsutum HOM05D001716 ORTHO05D004234 9.2e-14 80.1 67 65.7
Gohir.D05G082300 Gossypium hirsutum HOM05D001716 ORTHO05D004234 9.2e-14 80.1 67 65.7
Gohir.D09G096900 Gossypium hirsutum HOM05D001716 ORTHO05D004234 9.2e-14 80.1 67 65.7
Gorai.006G113600 Gossypium raimondii HOM05D001716 ORTHO05D004234 9.2e-14 80.1 67 65.7
Gorai.009G083900 Gossypium raimondii HOM05D001716 ORTHO05D004234 9.2e-14 80.1 67 65.7
Lalb_Chr14g0373181 Lupinus albus HOM05D001716 ORTHO05D004234 9.2e-14 80.1 65 67.7
Medtr3g104080 Medicago truncatula HOM05D001716 ORTHO05D004234 9.2e-14 80.1 67 65.7
PSO339G4331 Papaver somniferum HOM05D001716 ORTHO05D004234 9.2e-14 80.1 52 76.9
RcHm_v2.0_Chr5g0061781 Rosa chinensis HOM05D001716 ORTHO05D004234 9.2e-14 80.1 67 65.7
RcHm_v2.0_Chr6g0278081 Rosa chinensis HOM05D001716 ORTHO05D004234 9.2e-14 80.1 67 65.7
TPR.G25359 Trifolium pratense HOM05D001716 ORTHO05D004234 9.2e-14 80.1 67 65.7
VMungo0331G1056 Vigna mungo HOM05D001716 ORTHO05D004234 9.2e-14 80.1 67 65.7
ATR0115G019 Amborella trichopoda HOM05D001716 ORTHO05D004234 1.2e-13 79.7 67 65.7
Duzib150G0371 Durio zibethinus HOM05D001716 ORTHO05D004234 1.2e-13 79.7 67 65.7
Duzib170G0593 Durio zibethinus HOM05D001716 ORTHO05D004234 1.2e-13 79.7 67 65.7
LjContig00081g0024923 Lotus japonicus HOM05D001716 ORTHO05D004234 1.2e-13 79.7 67 65.7
Lalb_Chr22g0351411 Lupinus albus HOM05D001716 ORTHO05D004234 1.2e-13 79.7 67 64.2
PSO384G0177 Papaver somniferum HOM05D001716 ORTHO05D004234 1.2e-13 79.7 52 75.0
Potri.009G160600 Populus trichocarpa HOM05D001716 ORTHO05D004234 1.2e-13 79.7 67 65.7
Thecc.09G278500 Theobroma cacao HOM05D001716 ORTHO05D004234 1.2e-13 79.7 67 65.7
FAN20G2299 Fragaria x ananassa HOM05D001716 ORTHO05D004234 1.6e-13 79.3 67 64.2
PGR102G0473 Punica granatum HOM05D001716 ORTHO05D004234 2.1e-13 79.0 67 64.2
PGR119G1888 Punica granatum HOM05D001716 ORTHO05D004234 2.1e-13 79.0 67 64.2
Ciclev10011670m.g Citrus clementina HOM05D001716 ORTHO05D004234 2.7e-13 78.6 67 64.2
CDE02G4288 Ceratophyllum demersum HOM05D001716 ORTHO05D004234 3.5e-13 78.2 67 64.2
TAR633G2130 Trochodendron aralioides HOM05D001716 ORTHO05D004234 3.5e-13 78.2 67 62.7
Atru.chr3.3167 Acer truncatum HOM05D001716 ORTHO05D004234 4.6e-13 77.8 52 76.9
Cpa.g.sc195.28 Carica papaya HOM05D001716 ORTHO05D004234 4.6e-13 77.8 67 65.7
TWI15G0368 Tripterygium wilfordii HOM05D001716 ORTHO05D004234 4.6e-13 77.8 67 64.2
ECA236G0721 Erigeron canadensis HOM05D001716 ORTHO05D004234 6.0e-13 77.4 67 64.2
FAN16G0345 Fragaria x ananassa HOM05D001716 ORTHO05D004234 6.0e-13 77.4 67 64.2
FAN21G3845 Fragaria x ananassa HOM05D001716 ORTHO05D004234 6.0e-13 77.4 67 64.2
FAN25G1324 Fragaria x ananassa HOM05D001716 ORTHO05D004234 6.0e-13 77.4 67 64.2
FAN25G1887 Fragaria x ananassa HOM05D001716 ORTHO05D004234 6.0e-13 77.4 67 64.2
Sc21g0006950 Simmondsia chinensis HOM05D001716 ORTHO05D004234 7.8e-13 77.0 67 62.7
EL10Ac5g12141 Beta vulgaris HOM05D001716 ORTHO05D004234 1.0e-12 76.6 67 62.7
AUR62007270 Chenopodium quinoa HOM05D001716 ORTHO05D004234 1.0e-12 76.6 67 62.7
AUR62018729 Chenopodium quinoa HOM05D001716 ORTHO05D004234 1.0e-12 76.6 67 62.7
Thhalv10013490m.g Eutrema salsugineum HOM05D001716 ORTHO05D004234 1.0e-12 76.6 67 61.2
THA.LOC104799554 Tarenaya hassleriana HOM05D001716 ORTHO05D004234 1.0e-12 76.6 67 61.2
Aa31LG1G13210 Aethionema arabicum HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
AL6G33350 Arabidopsis lyrata HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
BcaB01g04715 Brassica carinata HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
BcaB05g22733 Brassica carinata HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
BcaB08g36439 Brassica carinata HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
BcaC01g06588 Brassica carinata HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
BcaC01g06591 Brassica carinata HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
BcaC03g13875 Brassica carinata HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
BcaC04g19566 Brassica carinata HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
A03p10690 Brassica napus HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
A10p18490 Brassica napus HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
BNapus_Darmor_BZH_scaffold_38p00730 Brassica napus HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
C02p10820 Brassica napus HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
C03p12300 Brassica napus HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
C09p54240 Brassica napus HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
C09p54320 Brassica napus HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
BolC2t07150H Brassica oleracea HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
BolC3t13703H Brassica oleracea HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
BolC9t58299H Brassica oleracea HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
BraA02t05652Z Brassica rapa HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
BraA03t10381Z Brassica rapa HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
BraA10t43929Z Brassica rapa HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
Carub.0006s2007 Capsella rubella HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
CARHR191210 Cardamine hirsuta HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
MD03G1150000 Malus domestica HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 64.2
MD11G1168700 Malus domestica HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 64.2
Medtr6g023370 Medicago truncatula HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 64.2
Sp6g22910 Schrenkiella parvula HOM05D001716 ORTHO05D004234 1.3e-12 76.3 67 61.2
AT5G22330 Arabidopsis thaliana HOM05D001716 ORTHO05D004234 1.7e-12 75.9 67 61.2
Lj1g0022809 Lotus japonicus HOM05D001716 ORTHO05D004234 1.7e-12 75.9 67 62.7
Lj4g0002833 Lotus japonicus HOM05D001716 ORTHO05D004234 1.7e-12 75.9 67 62.7
Migut.D02220 Erythranthe guttata HOM05D001716 ORTHO05D004234 3.0e-12 75.1 67 62.7
DCAR_006059 Daucus carota HOM05D001716 ORTHO05D004234 3.9e-12 74.7 67 61.2
Psat5g037320 Pisum sativum HOM05D001716 ORTHO05D004234 5.1e-12 74.3 67 61.2
Prupe.6G137000 Prunus persica HOM05D001716 ORTHO05D004234 8.7e-12 73.6 67 62.7
vmacro12158 Vaccinium macrocarpon HOM05D001716 ORTHO05D004234 1.9e-11 72.4 51 68.6
Haze_23345 Corylus avellana HOM05D001716 ORTHO05D004234 3.3e-11 71.6 52 69.2
AagrBONN_evm.TU.Sc2ySwM_368.3436 Anthoceros agrestis HOM05D001716 ORTHO05D004234 4.3e-11 71.2 52 69.2
SMO351G0419 Selaginella moellendorffii HOM05D001716 ORTHO05D004234 4.3e-11 71.2 67 58.2
Ah.12g054910 Amaranthus hybridus HOM05D001716 ORTHO05D004234 5.6e-11 70.9 67 58.2
Hma1.2p1_1031F.1_g250030 Hydrangea macrophylla HOM05D001716 ORTHO05D004234 5.6e-11 70.9 67 62.7
CiPaw.14G097900 Carya illinoinensis HOM05D001716 ORTHO05D004234 1.3e-10 69.7 67 58.2
QL08p000280 Quercus lobata HOM05D001716 ORTHO05D004234 1.3e-10 69.7 67 58.2
SEGI_07638 Sequoiadendron giganteum HOM05D001716 ORTHO05D004234 1.6e-10 69.3 52 65.4
QL01p011839 Quercus lobata HOM05D001716 ORTHO05D004234 2.8e-10 68.6 67 56.7
Pp3c16_21430 Physcomitrium patens HOM05D001716 ORTHO05D004234 3.6e-10 68.2 67 55.2
Cre09.g414050 Chlamydomonas reinhardtii HOM05D001716 ORTHO05D004234 8.1e-10 67.0 67 55.2
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 1.1e-09 66.6 67 56.7
Mapoly0108s0031 Marchantia polymorpha HOM05D001716 ORTHO05D004234 1.4e-09 66.2 67 56.7
CBR_g52323 Chara braunii HOM05D001716 ORTHO05D004234 1.8e-09 65.9 52 63.5
Cc10_g00460 Coffea canephora HOM05D001716 ORTHO05D016670 6.9e-09 63.9 58 65.5
MCO03G216 Micromonas commoda HOM05D001716 ORTHO05D004234 9.0e-09 63.5 67 50.7
Oeu001267.3 Olea europaea HOM05D001716 ORTHO05D004234 3.4e-08 61.6 108 42.6
QL07p047625 Quercus lobata HOM05D001716 ORTHO05D004234 4.4e-08 61.2 72 48.6
Actinidia07135 Actinidia chinensis HOM05D001716 ORTHO05D004234 6.4e-07 57.4 52 61.5
HPP92_019095 Vanilla planifolia HOM05D001716 ORTHO05D004234 1.4e-06 56.2 34 76.5


User provided reference genes

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