Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 5.6e-181 637.5 325 100.0
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 4.3e-104 382.1 313 62.9
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 5.2e-102 375.2 317 62.8
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 8.9e-102 374.4 317 62.5
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 4.4e-101 372.1 321 61.1
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 2.2e-100 369.8 323 59.8
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 2.9e-100 369.4 293 64.2
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 3.2e-99 365.9 316 58.9
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 7.0e-99 364.8 317 61.2
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 9.2e-99 364.4 317 59.6
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 1.6e-98 363.6 316 60.8
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 1.6e-98 363.6 317 62.1
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.3e-97 360.5 317 60.9
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 2.3e-97 359.8 319 60.5
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 2.3e-97 359.8 317 60.9
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 3.0e-97 359.4 315 60.3
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 1.5e-96 357.1 317 61.5
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 2.5e-96 356.3 313 61.3
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 5.6e-96 355.1 318 57.9
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 7.3e-96 354.8 323 58.5
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 3.6e-95 352.4 309 59.9
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 6.2e-95 351.7 316 58.2
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 1.8e-94 350.1 317 58.7
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 3.4e-93 345.9 318 58.5
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 1.3e-92 344.0 314 58.3
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 3.7e-92 342.4 320 57.5
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 3.7e-92 342.4 317 57.4
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 6.4e-92 341.7 316 56.6
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 2.4e-91 339.7 316 57.0
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 5.4e-91 338.6 316 56.3
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 4.6e-90 335.5 328 54.6
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 6.0e-90 335.1 339 54.0
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 6.0e-90 335.1 321 57.6
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 3.9e-89 332.4 319 58.3
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 1.1e-88 330.9 325 54.8
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 1.5e-88 330.5 321 53.6
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 1.5e-88 330.5 321 57.6
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.9e-88 330.1 318 57.2
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 2.5e-88 329.7 372 50.0
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 4.3e-88 328.9 237 68.8
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 5.6e-88 328.6 327 54.7
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 7.3e-88 328.2 303 58.4
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 1.2e-87 327.4 327 54.4
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 1.2e-87 327.4 317 55.8
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 1.2e-87 327.4 317 55.8
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 1.2e-87 327.4 296 55.4
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 2.1e-87 326.6 292 56.8
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 6.2e-87 325.1 317 54.9
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 8.1e-87 324.7 316 56.6
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.1e-86 324.3 320 56.6
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 1.8e-86 323.6 316 54.1
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.8e-86 323.6 322 54.3
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 4.0e-86 322.4 293 60.1
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 6.8e-86 321.6 319 55.5
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 8.9e-86 321.2 318 55.7
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 8.9e-86 321.2 318 55.7
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 1.5e-85 320.5 319 56.1
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.5e-85 320.5 313 54.0
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.5e-85 320.5 316 56.0
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 2.6e-85 319.7 319 55.2
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 3.4e-85 319.3 319 56.1
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 4.4e-85 318.9 321 54.5
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 9.8e-85 317.8 267 60.3
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 1.7e-84 317.0 276 60.5
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 1.7e-84 317.0 332 52.7
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 1.7e-84 317.0 274 58.8
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 2.2e-84 316.6 267 60.3
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 3.7e-84 315.8 328 50.0
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 8.3e-84 314.7 325 54.5
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 1.1e-83 314.3 299 54.8
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 1.4e-83 313.9 267 59.2
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 1.9e-83 313.5 317 54.3
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 2.4e-83 313.2 313 53.7
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 2.4e-83 313.2 316 52.5
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 2.4e-83 313.2 315 54.3
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 3.2e-83 312.8 351 47.9
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 3.2e-83 312.8 323 51.4
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 7.1e-83 311.6 313 52.7
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 1.2e-82 310.8 323 53.9
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 1.2e-82 310.8 323 53.9
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 2.1e-82 310.1 292 54.5
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 2.1e-82 310.1 318 50.6
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 2.7e-82 309.7 315 54.6
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 4.6e-82 308.9 259 59.5
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 1.0e-81 307.8 353 47.3
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 1.7e-81 307.0 316 51.9
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 1.7e-81 307.0 349 46.4
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 3.0e-81 306.2 315 52.1
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 2.5e-80 303.1 317 53.3
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 2.5e-80 303.1 374 47.9
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 4.3e-80 302.4 211 69.2
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 5.6e-80 302.0 295 53.2
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 1.6e-79 300.4 232 62.5
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 3.6e-79 299.3 343 48.4
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 3.6e-79 299.3 283 51.2
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 6.2e-79 298.5 351 46.4
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 6.2e-79 298.5 351 46.4
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 3.1e-78 296.2 360 48.6
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 3.4e-77 292.7 320 49.7
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 9.9e-77 291.2 341 47.8
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 9.9e-77 291.2 322 49.7
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 1.3e-76 290.8 205 68.8
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 1.1e-75 287.7 336 47.9
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 5.4e-75 285.4 358 45.0
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 1.1e-72 277.7 320 50.9
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 9.6e-72 274.6 210 65.7
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 3.2e-67 259.6 322 48.8
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 1.0e-65 254.6 321 48.0
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 8.7e-65 251.5 335 46.3
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 3.2e-59 233.0 260 49.6
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 5.4e-59 232.3 209 53.6
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 5.1e-57 225.7 220 56.4
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 1.1e-56 224.6 303 40.6
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 2.6e-53 213.4 366 36.1
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 4.9e-52 209.1 221 52.5
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 4.9e-52 209.1 221 52.5
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 1.3e-49 201.1 203 54.2
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 1.8e-49 200.7 222 50.9
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 3.0e-49 199.9 220 51.4
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 7.4e-48 195.3 189 55.0
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 2.1e-47 193.7 231 43.7
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 3.4e-45 186.4 318 38.4
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 4.2e-43 179.5 242 38.8
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 2.5e-40 170.2 217 46.5
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 8.2e-39 165.2 189 49.2
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 1.0e-36 158.3 201 41.3
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 8.5e-36 155.2 257 41.6
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 1.9e-35 154.1 291 36.1
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 7.2e-35 152.1 202 44.6
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 8.7e-33 145.2 106 62.3
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 1.5e-32 144.4 321 34.9
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 3.4e-29 133.3 164 48.2
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.7e-28 131.0 107 60.7
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 2.3e-25 120.6 285 29.5
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 5.7e-24 115.9 116 47.4
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 6.1e-18 95.9 108 51.9
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 9.7e-16 88.6 201 30.8
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 1.7e-15 87.8 194 30.4
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 8.0e-10 68.9 48 62.5


User provided reference genes

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