Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 3.2e-250 867.8 413 100.0
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 3.8e-182 641.7 410 72.2
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 1.4e-181 639.8 413 72.4
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 7.1e-181 637.5 408 71.8
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 1.3e-179 633.3 410 69.8
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 1.3e-179 633.3 414 69.8
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 1.6e-177 626.3 410 70.7
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 3.7e-177 625.2 454 65.4
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 4.1e-176 621.7 386 73.3
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 9.0e-176 620.5 383 72.6
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 5.8e-175 617.8 410 70.2
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 7.6e-175 617.5 416 68.3
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 1.3e-174 616.7 458 64.4
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 2.2e-174 615.9 408 68.4
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 1.3e-171 606.7 407 69.5
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 8.7e-171 604.0 369 72.4
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 5.7e-170 601.3 405 66.9
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 9.7e-170 600.5 405 68.9
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 1.3e-169 600.1 403 67.5
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 1.3e-169 600.1 372 71.8
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 4.8e-169 598.2 410 66.6
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 6.3e-169 597.8 405 67.2
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 1.8e-168 596.3 403 67.7
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 3.1e-168 595.5 410 67.1
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 5.3e-168 594.7 407 65.8
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 9.0e-168 594.0 345 76.8
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 1.2e-167 593.6 409 67.2
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 3.4e-167 592.0 407 67.6
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 3.4e-167 592.0 410 68.3
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 5.9e-167 591.3 407 66.1
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 5.9e-167 591.3 409 66.5
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 1.3e-166 590.1 406 65.5
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 1.1e-165 587.0 407 65.6
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 1.1e-165 587.0 409 66.3
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 4.2e-165 585.1 405 65.9
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 4.2e-165 585.1 414 65.5
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 5.5e-165 584.7 408 65.9
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 7.2e-165 584.3 405 65.7
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 7.2e-165 584.3 408 66.4
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 7.9e-164 580.9 347 74.6
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 1.0e-163 580.5 385 68.1
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 3.0e-163 578.9 411 64.2
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 5.7e-162 574.7 414 65.0
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 7.4e-162 574.3 414 64.7
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 8.2e-161 570.9 380 69.5
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 2.4e-160 569.3 416 62.7
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 2.4e-160 569.3 405 64.9
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.1e-160 568.9 406 64.3
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 4.1e-160 568.5 402 64.7
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 4.1e-160 568.5 412 64.8
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 5.3e-160 568.2 407 65.1
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 6.9e-160 567.8 417 64.0
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 2.0e-159 566.2 411 63.3
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 5.9e-159 564.7 406 64.3
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 2.2e-158 562.8 408 63.7
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 2.9e-158 562.4 408 62.5
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 1.1e-157 560.5 407 64.6
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 2.1e-156 556.2 407 62.9
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 2.1e-156 556.2 402 65.7
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 4.7e-156 555.1 419 60.6
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 4.7e-156 555.1 419 61.6
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 7.9e-156 554.3 408 61.3
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 7.9e-156 554.3 407 61.9
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 7.9e-156 554.3 418 61.7
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 2.3e-155 552.7 403 63.5
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 6.7e-155 551.2 416 61.8
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 8.8e-155 550.8 413 60.5
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 2.0e-154 549.7 378 65.3
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 2.6e-154 549.3 411 62.3
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 3.3e-154 548.9 412 62.1
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 3.3e-154 548.9 391 65.2
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 9.7e-154 547.4 404 61.9
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 2.2e-153 546.2 418 61.2
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 2.8e-153 545.8 413 60.5
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 4.1e-152 542.0 368 68.5
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 7.0e-152 541.2 419 60.6
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 9.1e-152 540.8 368 68.5
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 1.2e-151 540.4 407 61.7
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 1.6e-151 540.0 412 60.9
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 2.0e-151 539.7 413 59.8
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 3.5e-151 538.9 416 61.1
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 2.2e-150 536.2 430 58.4
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 2.9e-150 535.8 387 64.3
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 1.9e-149 533.1 420 60.7
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 1.9e-149 533.1 409 61.4
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 1.6e-148 530.0 423 60.5
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 6.7e-147 524.6 415 61.2
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 1.7e-145 520.0 347 67.1
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 1.2e-143 513.8 373 63.0
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 4.2e-141 505.4 373 64.1
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 5.2e-139 498.4 368 65.2
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 2.2e-137 493.0 298 73.2
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 1.5e-133 480.3 407 56.3
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 3.2e-133 479.2 333 64.3
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 1.0e-131 474.2 372 60.5
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 3.0e-131 472.6 444 53.8
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 1.1e-128 464.2 409 55.0
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 1.4e-128 463.8 411 53.3
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 2.0e-127 459.9 411 54.0
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 2.7e-127 459.5 409 52.3
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 3.8e-126 455.7 320 65.3
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.9e-125 453.4 368 56.5
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.0e-123 447.6 368 56.2
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-122 444.1 408 55.4
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 1.1e-120 437.6 351 59.3
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 3.5e-119 432.6 351 59.0
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.8e-119 431.4 362 57.7
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 4.7e-116 422.2 307 62.9
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.0e-115 419.1 406 53.0
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 2.2e-113 413.3 317 60.9
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 4.1e-112 409.1 401 51.1
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 1.6e-111 407.1 350 57.1
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 9.8e-106 387.9 436 45.4
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.2e-105 386.7 247 68.8
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 3.0e-102 376.3 283 58.3
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 1.1e-101 374.4 413 47.0
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 2.5e-101 373.2 250 68.0
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.3e-101 372.9 416 48.3
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 7.3e-101 371.7 199 83.4
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 6.2e-100 368.6 274 62.8
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 4.6e-95 352.4 200 77.5
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 2.0e-90 337.0 259 60.2
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.1e-88 328.6 272 56.2
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.1e-84 315.1 350 48.6
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.6e-76 289.7 207 64.7
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.2e-76 288.9 207 63.8
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 2.6e-74 283.5 296 44.6
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.9e-73 280.0 222 60.8
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 9.3e-72 275.0 167 72.5
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 6.0e-71 272.3 402 39.3
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 1.2e-63 248.1 165 69.7
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.9e-54 216.5 194 55.2
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.7e-53 212.6 149 65.1
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.7e-53 212.6 149 65.1
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.7e-53 212.6 149 65.1
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.3e-52 209.1 149 64.4
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-48 197.6 154 59.1
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 7.9e-47 192.2 212 44.8
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 1.1e-45 188.3 115 70.4
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.4e-45 186.4 188 47.9
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 2.1e-39 167.5 86 87.2
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-38 165.2 96 72.9
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 6.3e-36 156.0 108 66.7
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 1.1e-35 155.2 100 68.0
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 1.6e-26 124.8 84 67.9
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.0e-22 110.2 66 71.2
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.5e-21 105.9 79 60.8
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 8.0e-15 85.9 107 42.1
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 6.8e-14 82.8 43 81.4
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 3.4e-13 80.5 87 48.3
Gohir.A08G000024 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-10 72.0 103 40.8
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 3.5e-10 70.5 245 29.4
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 7.8e-10 69.3 47 59.6
Dinv44900 Davidia involucrata HOM05D004741 ORTHO05D005454 1.0e-09 68.9 67 59.7
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 5.6e-08 63.2 35 77.1
Mapoly0009s0116 Marchantia polymorpha HOM05D005251 ORTHO05D006680 1.6e-07 61.6 238 26.1
Gohir.A13G000601 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-06 58.5 59 45.8


User provided reference genes

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