Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 1.9e-46 188.7 91 100.0
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 3.8e-42 174.5 91 91.2
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.1e-41 172.9 91 89.0
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.1e-41 172.9 91 89.0
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 1.4e-41 172.6 91 87.9
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 4.2e-41 171.0 91 86.8
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 4.2e-41 171.0 91 86.8
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 7.1e-41 170.2 91 86.8
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 7.1e-41 170.2 88 90.9
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 4.6e-40 167.5 89 89.9
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 4.6e-40 167.5 86 91.9
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 4.6e-40 167.5 86 91.9
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 6.0e-40 167.2 89 88.8
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 7.9e-40 166.8 89 88.8
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 7.9e-40 166.8 89 88.8
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 1.0e-39 166.4 89 88.8
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 1.3e-39 166.0 86 89.5
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.3e-39 166.0 86 89.5
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.3e-39 166.0 86 89.5
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 1.3e-39 166.0 86 89.5
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 1.3e-39 166.0 95 86.3
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.8e-39 165.6 89 88.8
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 1.8e-39 165.6 89 88.8
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 2.3e-39 165.2 89 87.6
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 3.0e-39 164.9 86 90.7
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 3.9e-39 164.5 89 87.6
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 3.9e-39 164.5 89 87.6
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 3.9e-39 164.5 86 89.5
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 3.9e-39 164.5 86 89.5
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 3.9e-39 164.5 86 90.7
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 3.9e-39 164.5 86 90.7
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 5.1e-39 164.1 89 87.6
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 5.1e-39 164.1 91 84.6
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 5.1e-39 164.1 91 85.7
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 6.7e-39 163.7 89 87.6
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 6.7e-39 163.7 89 85.4
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 6.7e-39 163.7 95 84.2
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 6.7e-39 163.7 95 83.2
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 8.7e-39 163.3 89 85.4
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 8.7e-39 163.3 86 88.4
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 8.7e-39 163.3 98 82.7
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 8.7e-39 163.3 86 88.4
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 1.1e-38 162.9 89 85.4
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 1.5e-38 162.5 86 88.4
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 3.3e-38 161.4 86 88.4
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 4.3e-38 161.0 89 86.5
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 4.3e-38 161.0 89 86.5
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 5.6e-38 160.6 87 89.7
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 5.6e-38 160.6 86 87.2
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 7.4e-38 160.2 86 87.2
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 7.4e-38 160.2 83 89.2
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 9.6e-38 159.8 86 86.0
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 9.6e-38 159.8 86 87.2
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 1.3e-37 159.5 86 86.0
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 1.3e-37 159.5 84 88.1
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 1.6e-37 159.1 95 80.0
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 2.8e-37 158.3 89 84.3
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 2.8e-37 158.3 89 84.3
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 2.8e-37 158.3 85 88.2
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 6.2e-37 157.1 86 86.0
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 8.1e-37 156.8 89 83.1
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 1.4e-36 156.0 89 83.1
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 1.4e-36 156.0 89 83.1
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 1.4e-36 156.0 89 83.1
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 1.4e-36 156.0 89 83.1
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 1.8e-36 155.6 89 79.8
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 1.8e-36 155.6 89 84.3
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 1.8e-36 155.6 90 80.0
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 4.0e-36 154.5 86 84.9
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 4.0e-36 154.5 89 83.1
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 5.3e-36 154.1 89 83.1
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 5.3e-36 154.1 89 80.9
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 6.9e-36 153.7 89 83.1
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 6.9e-36 153.7 89 82.0
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 1.2e-35 152.9 91 75.8
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 2.0e-35 152.1 86 82.6
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 2.0e-35 152.1 84 85.7
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 3.4e-35 151.4 90 77.8
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 3.4e-35 151.4 90 77.8
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 3.4e-35 151.4 113 68.1
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 3.4e-35 151.4 90 76.7
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 4.5e-35 151.0 89 80.9
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 5.8e-35 150.6 86 81.4
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 7.6e-35 150.2 85 81.2
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 7.6e-35 150.2 84 84.5
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 7.6e-35 150.2 84 84.5
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 7.6e-35 150.2 84 84.5
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 9.9e-35 149.8 86 80.2
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 1.7e-34 149.1 84 83.3
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 1.7e-34 149.1 84 83.3
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.7e-34 149.1 86 75.6
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 2.2e-34 148.7 85 81.2
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 4.9e-34 147.5 86 79.1
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.9e-33 145.6 89 74.2
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 3.2e-33 144.8 84 81.0
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 7.1e-33 143.7 90 74.4
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 7.1e-33 143.7 80 85.0
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 1.2e-32 142.9 77 88.3
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 1.6e-29 132.5 71 90.1
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 2.8e-29 131.7 81 75.3
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 1.2e-27 126.3 69 89.9
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 2.0e-27 125.6 64 87.5
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 2.6e-27 125.2 83 73.5
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 2.6e-27 125.2 75 84.0
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 3.4e-27 124.8 69 87.0
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 1.3e-26 122.9 66 87.9
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 4.9e-26 120.9 73 76.7
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 6.5e-26 120.6 69 84.1
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 1.1e-25 119.8 91 67.0
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 1.1e-25 119.8 91 67.0
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 5.5e-25 117.5 71 76.1
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 7.1e-25 117.1 75 74.7
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 7.1e-25 117.1 90 66.7
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 2.1e-24 115.5 69 72.5
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 1.3e-23 112.8 66 81.8
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 3.0e-23 111.7 66 78.8
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 5.1e-23 110.9 89 64.0
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 5.7e-22 107.5 69 71.0
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 1.4e-20 102.8 83 53.0
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 5.3e-20 100.9 90 50.0
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 1.2e-19 99.8 90 57.8
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 3.6e-16 88.2 53 83.0
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 4.6e-16 87.8 45 84.4
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 3.0e-15 85.1 90 46.7
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 8.8e-15 83.6 54 81.5
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 1.1e-12 76.6 47 74.5
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 3.1e-12 75.1 40 82.5
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 3.4e-11 71.6 42 78.6


User provided reference genes

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